mRNA_L-elsbetiae_contig1807.5187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1807.5187.1
Unique NamemRNA_L-elsbetiae_contig1807.5187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1807.5187.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.840e-21
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 ENMDQVSIGSFTESEAEGSRLESGAVRGGGGRDAENAHDYSSLAECTPRRQRVGSRE-DLGGFYPPLQVANIAKREPQGLHLSTLQRSTLHWMLWREGGDE 300
            E  +Q SI SF+ESE E S+  +GA   G   D       SSLAE TPRR+  G+R+  LGGFYPPLQVAN+A +  +G  LSTLQ+STL WMLWRE G++
Sbjct:  993 EYSEQASIDSFSESEPERSKPGAGAKEAGADEDMTGD---SSLAEGTPRRRGAGARDRSLGGFYPPLQVANLANKAREGSTLSTLQKSTLQWMLWRERGEK 1090
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BLAST of mRNA_L-elsbetiae_contig1807.5187.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.630e-20
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ENMDQVSIGSFTESEAEGSRLESGAVRGGGGRDAENAHDYSSLAECTPRRQRVGSRED-LGGFYPPLQVANIAKREPQGLHLSTLQRSTLHWMLWREGGDE 300
            E  +Q SI SF+ESE   S+    A   G   D     D SSLAE TPRR+  G+R+  LGGFYPPLQVAN+A +  +GL LSTLQ STL WMLWRE G++
Sbjct:  990 EYSEQASIDSFSESEPGRSKPGVSATEAGADEDMT---DGSSLAEGTPRRRGAGARDCYLGGFYPPLQVANLASKAREGLTLSTLQESTLQWMLWRERGEK 1087
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1807.5187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB47_ECTSI1.840e-2154.46SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE1.630e-2054.46SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1807contigL-elsbetiae_contig1807:3613..4332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1807.5187.1prot_L-elsbetiae_contig1807.5187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1807 3619..4332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.2182596-UTR-L-elsbetiae_contig1807:3612..36181622815753.2182596-UTR-L-elsbetiae_contig1807:3612..3618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1807 3613..3618 +
1691683080.4534326-UTR-L-elsbetiae_contig1807:3612..36181691683080.4534326-UTR-L-elsbetiae_contig1807:3612..3618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1807 3613..3618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.2308905-CDS-L-elsbetiae_contig1807:3618..38131622815753.2308905-CDS-L-elsbetiae_contig1807:3618..3813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 3619..3813 +
1691683080.4630206-CDS-L-elsbetiae_contig1807:3618..38131691683080.4630206-CDS-L-elsbetiae_contig1807:3618..3813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 3619..3813 +
1622815753.2429693-CDS-L-elsbetiae_contig1807:4230..43321622815753.2429693-CDS-L-elsbetiae_contig1807:4230..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 4231..4332 +
1691683080.472816-CDS-L-elsbetiae_contig1807:4230..43321691683080.472816-CDS-L-elsbetiae_contig1807:4230..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 4231..4332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1807.5187.1

>prot_L-elsbetiae_contig1807.5187.1 ID=prot_L-elsbetiae_contig1807.5187.1|Name=mRNA_L-elsbetiae_contig1807.5187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MDQVSIGSFTESEAEGSRLESGAVRGGGGRDAENAHDYSSLAECTPRRQR
VGSREDLGGFYPPLQVANIAKREPQGLHLSTLQRSTLHWMLWREGGDES
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mRNA from alignment at L-elsbetiae_contig1807:3613..4332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1807.5187.1 ID=mRNA_L-elsbetiae_contig1807.5187.1|Name=mRNA_L-elsbetiae_contig1807.5187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:3613..4332+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAATATGGACCAGGTGTCGATCGGGTCGTTCACGGAGAGCGAGGCGGA
AGGAAGCAGGCTGGAGAGCGGCGCCGTCAGGGGCGGGGGCGGAAGAGACG
CCGAGAACGCGCACGATTATTCGTCTCTGGCGGAGTGCACTCCTCGGCGG
CAAAGGGTCGGCTCTAGAGAAGACCTCGGGGGCTTCTACCCTCCGCTGCA
GGTGCGGAACGCAAAAATACGTGTTAAATTTCCGATGCGAAGATGTTGCT
CCTTGAAACGCGTGCTTTGTAATGGTGTCTGTCTGTCTGGACGTCTGGAC
TGACCGTAAATTTCCACTTCCACTTGGTCTGCTCAGCGGCGGTTTGGAAC
GGTCGTTGGTTGGTCGCCCTGTCGCCGGGTTTTCCCGTCGAATACAATAC
TACCTCGCTGCTTCAAAACTCCCGCAGTTAACGTTTTTACCGCCTACCCA
CACAAGGCGACGAAAGGAGCAATGAGCAATGAACGGTGTTTAATTTGTCG
CAAGCTCGGGGTATTACCGTGTTGCACCAGTAAACTTAGTGGCAGCCTTA
TTGCGCGGTAAAAATGTTTTTTTTTTTGTCACACGTTGCGATGGGGGGGG
CGGGACGGCTTGAAGCAGGTGGCCAACATCGCGAAAAGGGAGCCCCAAGG
CCTGCACCTCTCTACCCTGCAGCGCAGCACGCTGCACTGGATGCTCTGGC
GGGAGGGTGGCGATGAGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1807:3613..4332+

>mRNA_L-elsbetiae_contig1807.5187.1 ID=mRNA_L-elsbetiae_contig1807.5187.1|Name=mRNA_L-elsbetiae_contig1807.5187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:3613..4332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCAGGTGTCGATCGGGTCGTTCACGGAGAGCGAGGCGGAAGGAAG
CAGGCTGGAGAGCGGCGCCGTCAGGGGCGGGGGCGGAAGAGACGCCGAGA
ACGCGCACGATTATTCGTCTCTGGCGGAGTGCACTCCTCGGCGGCAAAGG
GTCGGCTCTAGAGAAGACCTCGGGGGCTTCTACCCTCCGCTGCAGATGGA
CCAGGTGTCGATCGGGTCGTTCACGGAGAGCGAGGCGGAAGGAAGCAGGC
TGGAGAGCGGCGCCGTCAGGGGCGGGGGCGGAAGAGACGCCGAGAACGCG
CACGATTATTCGTCTCTGGCGGAGTGCACTCCTCGGCGGCAAAGGGTCGG
CTCTAGAGAAGACCTCGGGGGCTTCTACCCTCCGCTGCAGGTGGCCAACA
TCGCGAAAAGGGAGCCCCAAGGCCTGCACCTCTCTACCCTGCAGCGCAGC
ACGCTGCACTGGATGCTCTGGCGGGAGGGTGGCGATGAGAGCGTGGCCAA
CATCGCGAAAAGGGAGCCCCAAGGCCTGCACCTCTCTACCCTGCAGCGCA
GCACGCTGCACTGGATGCTCTGGCGGGAGGGTGGCGATGAGAGC
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