mRNA_L-elsbetiae_contig1807.5186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1807.5186.1
Unique NamemRNA_L-elsbetiae_contig1807.5186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1807.5186.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.580e-14
Identity = 81/160 (50.62%), Postives = 95/160 (59.38%), Query Frame = 2 
Query:    5 ESPEMLRLGSASPDTDGVRHRD--PSFDRGSWGAGSAAGRLAGGDVSCDGDNSGAIFSLAQSPDGALLSSVGERDDSQAFGSMPSPAIEGFGGMDSSGGGVDSLSPLALARSLDGSGEAWDDG-GSGSGCCRGSFPGEDDGGDYGGLSPVMSARSESTVD 475
            ESPE+LRLG ASP+ + +  R+  PSFDRGSW     +G   GG V     N+GA F+LA+SP GA  S+ G R   Q  GSM SP  EG   +D SGG V SLSP  LA SLD + E  D G GS +G      PG  DG D G LSPV SA SE+T D
Sbjct:  653 ESPEILRLGPASPNRESMIRREQRPSFDRGSWEVRDVSGDPHGGGVL---GNNGASFTLARSPGGA--STRGSRQG-QRLGSMLSPDSEGVVFLDGSGG-VSSLSPFVLAGSLDAA-EMGDAGYGSDNGGGWALPPGGGDG-DCG-LSPVRSATSETTDD 802
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BLAST of mRNA_L-elsbetiae_contig1807.5186.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.040e-11
Identity = 74/161 (45.96%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    5 ESPEMLRLGSASPDTDGV--RHRDPSFDRGSWGAGSAAGRLAGGDVSCDGDNSGAIFSLAQSPDGALLSSVGERDDSQAFGSMPSPAIEGFGGMDSSGGGVDSLSPLALARSLDGS--GEAWDDGGSGSGCCRGSFPGEDDGGDYGGLSPVMSARSESTVD 475
            ESPE+LRLG ASP  + +    R PSFDRG  G     G L GG V     N+GA F+LA+SP     S+ G R D Q   SM SP  EG G +D +GG V SLSP  LA S D +  G+A    G+G G    S  G+ D      LSPV SA SE+T D
Sbjct:  659 ESPEILRLGPASPARERMICHERRPSFDRGFSGVRDVGGVLHGGGVP---GNNGASFTLARSP----ASTRGVRRD-QRLRSMLSPDTEGVGFLDGTGG-VSSLSPFVLAGSFDVADMGDAGYGSGNGGGWALPSGGGDGDCD----LSPVRSATSETTDD 806
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1807.5186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB47_ECTSI1.580e-1450.63SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE4.040e-1145.96SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1807contigL-elsbetiae_contig1807:2571..3303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size717
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.1719468-UTR-L-elsbetiae_contig1807:2570..25861622815753.1719468-UTR-L-elsbetiae_contig1807:2570..2586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1807 2571..2586 +
1691683080.4355202-UTR-L-elsbetiae_contig1807:2570..25861691683080.4355202-UTR-L-elsbetiae_contig1807:2570..2586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1807 2571..2586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.1846206-CDS-L-elsbetiae_contig1807:2586..33031622815753.1846206-CDS-L-elsbetiae_contig1807:2586..3303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 2587..3303 +
1691683080.4445002-CDS-L-elsbetiae_contig1807:2586..33031691683080.4445002-CDS-L-elsbetiae_contig1807:2586..3303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1807 2587..3303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1807.5186.1prot_L-elsbetiae_contig1807.5186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1807 2587..3303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1807.5186.1

>prot_L-elsbetiae_contig1807.5186.1 ID=prot_L-elsbetiae_contig1807.5186.1|Name=mRNA_L-elsbetiae_contig1807.5186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MLRLGSASPDTDGVRHRDPSFDRGSWGAGSAAGRLAGGDVSCDGDNSGAI
FSLAQSPDGALLSSVGERDDSQAFGSMPSPAIEGFGGMDSSGGGVDSLSP
LALARSLDGSGEAWDDGGSGSGCCRGSFPGEDDGGDYGGLSPVMSARSES
TVDSDGGACPSQQPKRAPFTEEGQEPGDEDQDQDEDQEGDEDEDITLTPE
VSRSSGLTPSRFGLATRRGGSGGRKQGRGRTCERGGLEG
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mRNA from alignment at L-elsbetiae_contig1807:2571..3303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1807.5186.1 ID=mRNA_L-elsbetiae_contig1807.5186.1|Name=mRNA_L-elsbetiae_contig1807.5186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=733bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:2571..3303+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGAATCTCCGGAGATGTTGCGGCTGGGTTCAGCATCCCCGGACACCG
ACGGAGTCCGTCACCGTGACCCGTCGTTCGACCGCGGGTCTTGGGGGGCC
GGGTCTGCCGCTGGCCGGCTCGCCGGCGGCGACGTAAGCTGCGACGGGGA
CAACAGCGGCGCGATATTTTCCCTCGCGCAGAGTCCAGACGGAGCACTGC
TGTCGTCGGTGGGAGAGAGAGATGATTCCCAGGCCTTCGGGTCGATGCCC
AGCCCCGCGATCGAGGGCTTCGGTGGGATGGACAGCAGTGGCGGCGGCGT
TGATTCGCTATCCCCGCTGGCGCTCGCGCGATCGTTGGATGGGAGTGGTG
AGGCTTGGGACGATGGCGGCAGCGGCAGCGGCTGCTGCCGGGGCTCGTTC
CCCGGCGAGGACGACGGGGGCGACTACGGCGGCTTGTCCCCCGTGATGTC
GGCGAGGTCGGAGAGCACCGTGGATTCCGACGGGGGGGCGTGCCCGTCGC
AACAGCCGAAGAGGGCCCCGTTTACCGAGGAGGGGCAGGAGCCGGGAGAC
GAAGACCAAGACCAAGACGAAGACCAAGAGGGAGACGAAGACGAAGACAT
CACGCTCACACCGGAGGTTTCGCGATCGTCGGGGTTGACCCCGTCCCGGT
TCGGGCTCGCGACGCGCCGCGGCGGTAGCGGCGGTAGGAAACAGGGAAGG
GGGAGAACCTGCGAGCGGGGAGGCTTGGAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1807:2571..3303+

>mRNA_L-elsbetiae_contig1807.5186.1 ID=mRNA_L-elsbetiae_contig1807.5186.1|Name=mRNA_L-elsbetiae_contig1807.5186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:2571..3303+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCGGCTGGGTTCAGCATCCCCGGACACCGACGGAGTCCGTCACCG
TGACCCGTCGTTCGACCGCGGGTCTTGGGGGGCCGGGTCTGCCGCTGGCC
GGCTCGCCGGCGGCGACGTAAGCTGCGACGGGGACAACAGCGGCGCGATA
TTTTCCCTCGCGCAGAGTCCAGACGGAGCACTGCTGTCGTCGGTGGGAGA
GAGAGATGATTCCCAGGCCTTCGGGTCGATGCCCAGCCCCGCGATCGAGG
GCTTCGGTGGGATGGACAGCAGTGGCGGCGGCGTTGATTCGCTATCCCCG
CTGGCGCTCGCGCGATCGTTGGATGGGAGTGGTGAGGCTTGGGACGATGG
CGGCAGCGGCAGCGGCTGCTGCCGGGGCTCGTTCCCCGGCGAGGACGACG
GGGGCGACTACGGCGGCTTGTCCCCCGTGATGTCGGCGAGGTCGGAGAGC
ACCGTGGATTCCGACGGGGGGGCGTGCCCGTCGCAACAGCCGAAGAGGGC
CCCGTTTACCGAGGAGGGGCAGGAGCCGGGAGACGAAGACCAAGACCAAG
ACGAAGACCAAGAGGGAGACGAAGACGAAGACATCACGCTCACACCGGAG
GTTTCGCGATCGTCGGGGTTGACCCCGTCCCGGTTCGGGCTCGCGACGCG
CCGCGGCGGTAGCGGCGGTAGGAAACAGGGAAGGGGGAGAACCTGCGAGC
GGGGAGGCTTGGAAGGGATGTTGCGGCTGGGTTCAGCATCCCCGGACACC
GACGGAGTCCGTCACCGTGACCCGTCGTTCGACCGCGGGTCTTGGGGGGC
CGGGTCTGCCGCTGGCCGGCTCGCCGGCGGCGACGTAAGCTGCGACGGGG
ACAACAGCGGCGCGATATTTTCCCTCGCGCAGAGTCCAGACGGAGCACTG
CTGTCGTCGGTGGGAGAGAGAGATGATTCCCAGGCCTTCGGGTCGATGCC
CAGCCCCGCGATCGAGGGCTTCGGTGGGATGGACAGCAGTGGCGGCGGCG
TTGATTCGCTATCCCCGCTGGCGCTCGCGCGATCGTTGGATGGGAGTGGT
GAGGCTTGGGACGATGGCGGCAGCGGCAGCGGCTGCTGCCGGGGCTCGTT
CCCCGGCGAGGACGACGGGGGCGACTACGGCGGCTTGTCCCCCGTGATGT
CGGCGAGGTCGGAGAGCACCGTGGATTCCGACGGGGGGGCGTGCCCGTCG
CAACAGCCGAAGAGGGCCCCGTTTACCGAGGAGGGGCAGGAGCCGGGAGA
CGAAGACCAAGACCAAGACGAAGACCAAGAGGGAGACGAAGACGAAGACA
TCACGCTCACACCGGAGGTTTCGCGATCGTCGGGGTTGACCCCGTCCCGG
TTCGGGCTCGCGACGCGCCGCGGCGGTAGCGGCGGTAGGAAACAGGGAAG
GGGGAGAACCTGCGAGCGGGGAGGCTTGGAAGGG
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