mRNA_L-elsbetiae_contig1806.5181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1806.5181.1
Unique NamemRNA_L-elsbetiae_contig1806.5181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1806.5181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1806contigL-elsbetiae_contig1806:17130..18890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1806.5181.1prot_L-elsbetiae_contig1806.5181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1806 17130..18890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.717626-CDS-L-elsbetiae_contig1806:17129..171801622815752.717626-CDS-L-elsbetiae_contig1806:17129..17180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 17130..17180 +
1691683080.1420636-CDS-L-elsbetiae_contig1806:17129..171801691683080.1420636-CDS-L-elsbetiae_contig1806:17129..17180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 17130..17180 +
1622815752.7293057-CDS-L-elsbetiae_contig1806:17581..176651622815752.7293057-CDS-L-elsbetiae_contig1806:17581..17665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 17582..17665 +
1691683080.1517744-CDS-L-elsbetiae_contig1806:17581..176651691683080.1517744-CDS-L-elsbetiae_contig1806:17581..17665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 17582..17665 +
1622815752.7391448-CDS-L-elsbetiae_contig1806:18695..188901622815752.7391448-CDS-L-elsbetiae_contig1806:18695..18890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 18696..18890 +
1691683080.169391-CDS-L-elsbetiae_contig1806:18695..188901691683080.169391-CDS-L-elsbetiae_contig1806:18695..18890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 18696..18890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1806.5181.1

>prot_L-elsbetiae_contig1806.5181.1 ID=prot_L-elsbetiae_contig1806.5181.1|Name=mRNA_L-elsbetiae_contig1806.5181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
AGAKGWWARASDRRRAKAEAKALQRANRRAAAARKHEFDKLQDSKRLAIQ
AAEEREEQLRLSDDVQLRSAAAAGRNGEPGAEQNASPEAAVETPEAADGE
GSGGEDGQAQ
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mRNA from alignment at L-elsbetiae_contig1806:17130..18890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1806.5181.1 ID=mRNA_L-elsbetiae_contig1806.5181.1|Name=mRNA_L-elsbetiae_contig1806.5181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1761bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:17130..18890+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGGCGAAGGGGTGGTGGGCTCGTGCAAGCGACCGGCGCAGAGCGAA
GGTCGGTTTTCCTTGATCTTGGGGTGGAGGCTGCTTGCTTGTCTTCTTCT
TCTGCATATGCCTGCGGCAGGCGGCACGGGCGACCTGGGGCTCCGATCGT
TTTTCAGCGCGGCTGTTGTTGCGATCCTTTGCGGCACTAATCTGCGCACA
CAGCGGTTTTTGCTGTTGTGCTTTTTCCCGCCCCAAGTTCCTCACCTCAA
CCCTGCAACTCGTACAACCTTGGCATGCTACATACATTATTATGCAGCAT
GCGTTTCGCTGTCTATTTTTGTGGTTGTTACCCGCCCTTGGTGGTTTGTT
TTTTGAGCGCATAAATTAAGTTACGTCTCTGCTGTTCCTGCTTGGCGTTT
TCCTGCCCCCGCGTTGCATGCGTTCCCGTCCTTTTCCCCTTGCTTCTTCA
AGGCGGAGGCTAAAGCGTTGCAACGGGCCAACAGGCGAGCCGCCGCAGCG
CGCAAGCATGAGTTCGACAAACTTCAGGACTCAAAGGTACTCCCGTGTGT
GTGTAACCGTAACCTGCGACTTTTGTTTTTCCCCCATCAGTTGTTGCTGC
ATGTATAATACACAGGCAGTGTAGGTGGGGTCTTCCCCGTGGTTGCCAGG
AACCGGTGGCATCGCTGGGCTGGGCTGTGCTGTGCCGAAGATTTCTGCTG
GGGCCGCTCCTTGCTGTTGTTGCTGCAGGAGGGAAGACGTTCACCTCTTG
CTGCCGGGTCGGTCCCATGTGCCTGTTTGATTTTTTTTTTTCGTTTTGTT
TTCTGTGCAGGGAACGCAAAATCTGTTAGCGGATAGACTGGTAATTCTCT
TGGTAATTAAAAAAAAAAATCAAGAACGAAGCAGACTCAAAAAATGGGAC
AAGGAAGACTTTTCAAATCAAGAAGTTGGAATAATTTTTCAGCAATTTAT
TAAATGAGAGAACTGAATCATGGCATTAAGCAGCATGGCTGGGTGAACGG
TACCGATGAGTAATTCGCTTCGTTTTGGAACGACCAACACGGTTTTTCTG
TGCTGGCTGCCTCGCAGGTTACCGCAACATCGCTTCCTATCTAGAGGCAA
AATAATGCGCCTTGCCATCGTCCAGCTCGCTGTTGATTGACGAGCCGGCA
ATTGTTCACGCCCGTGTGCGTCCGCCAGGGCCTGAGTTGATACATATGCT
TATTTTATTTATATTTTATGCTTTGTTGCCTGTTTTGGCATACATTTCGT
TATGCACACAAGAAACGAGCACAACTGTCGCGTTTAAGGCTAATCCGTGC
ACAAGTCGAGCATCAATGGCCATTTTTTCGAGCATAGCTCGGCCTTTTCA
TGTGCTCTAGAAGCCCATTTACAAAAATTGTGCATGCATACCAAGTCAGA
CCTTAGCGTCCGCTCAGAGGGTGTTCAGCAAAAGCTCAGGCATTTTGGTC
AGCACTTTTTTTTTTTCACAACGTACGTACGTAGGCCAGCCTGAGTATGT
ACGCACATGCATAGACATGTACGTACCTGAATGTTTCCTTCCCCGCTTTC
AATCGTCCCCGATCAGCGTCTTGCAATCCAGGCGGCCGAGGAGAGGGAGG
AGCAGCTGCGACTCTCGGACGACGTGCAGCTCCGGTCTGCCGCCGCGGCC
GGCCGAAACGGCGAGCCCGGCGCGGAACAAAACGCCTCCCCCGAAGCGGC
CGTTGAAACCCCCGAAGCCGCCGACGGCGAAGGCTCCGGGGGGGAGGATG
GGCAAGCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1806:17130..18890+

>mRNA_L-elsbetiae_contig1806.5181.1 ID=mRNA_L-elsbetiae_contig1806.5181.1|Name=mRNA_L-elsbetiae_contig1806.5181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:17130..18890+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGGCGAAGGGGTGGTGGGCTCGTGCAAGCGACCGGCGCAGAGCGAA
GGCGGGGGCGAAGGGGTGGTGGGCTCGTGCAAGCGACCGGCGCAGAGCGA
AGGCGGAGGCTAAAGCGTTGCAACGGGCCAACAGGCGAGCCGCCGCAGCG
CGCAAGCATGAGTTCGACAAACTTCAGGACTCAAAGGCGGAGGCTAAAGC
GTTGCAACGGGCCAACAGGCGAGCCGCCGCAGCGCGCAAGCATGAGTTCG
ACAAACTTCAGGACTCAAAGCGTCTTGCAATCCAGGCGGCCGAGGAGAGG
GAGGAGCAGCTGCGACTCTCGGACGACGTGCAGCTCCGGTCTGCCGCCGC
GGCCGGCCGAAACGGCGAGCCCGGCGCGGAACAAAACGCCTCCCCCGAAG
CGGCCGTTGAAACCCCCGAAGCCGCCGACGGCGAAGGCTCCGGGGGGGAG
GATGGGCAAGCGCAGCGTCTTGCAATCCAGGCGGCCGAGGAGAGGGAGGA
GCAGCTGCGACTCTCGGACGACGTGCAGCTCCGGTCTGCCGCCGCGGCCG
GCCGAAACGGCGAGCCCGGCGCGGAACAAAACGCCTCCCCCGAAGCGGCC
GTTGAAACCCCCGAAGCCGCCGACGGCGAAGGCTCCGGGGGGGAGGATGG
GCAAGCGCAG
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