mRNA_L-elsbetiae_contig1806.5180.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1806.5180.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI) HSP 1 Score: 458 bits (1178), Expect = 1.190e-127 Identity = 602/1644 (36.62%), Postives = 713/1644 (43.37%), Query Frame = 1
Query: 1 QLRKQQRRRTHQRHDSRGAAATDPRLSPSPGLFDRCCXXXSIALGWLRGVAWTSAHAYGGLLIVRLGRWVLLLPLLAPPGQPASSSSASMPSSPGPMETTTLSSGLFVEDGTFV--GEGGXXXXXXXXXDAYRGAMPAGNESLAVAXXXXXXXXAVCYALTEAAAVRRLLGYRLVRVPPXXXXXXXXXXARVPLGLAAEVLRAGCIAASAETALALIS--STXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMLRVLAXXXXXXXXXXXXXXXXXXXXLSRGPRXXXXXXASRTPAAVSSAGNA--PPAASTPATETPSPXXXXXXAGI-AGRGGQEGTGEGAAGAEAKAQR-PVALAWDVPSGALGGGFYALAAGGVFEDAMREYVLGDGWFSTAGSVRTTLAAVFAAVFALRSVP--GGREEKFNPLVPCYRLLGFGDGAARSKQRRPGRPVAGGGERPPTLVKS-RPIGAEA---TSKRLGPPQPGVCSESKVGQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--VSQWLVSKDEGDAAAGWWEARVGGKGGGQEGDDPAAPRPVRPMVPECHPSWRLPSPAAAAAXXSPG-------------ASGRGGSGSECFPRCGSSEQSDITGGDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPSATATRQKRRASMXXXXXXXXXXXXXX-----GGRNDETRRRSVRSVPAAXXXXXXXXGXXXXXXXXXXXXHEXXXXXXXXXXXXXXXXXXXKVNVGADPGAEARLEGRGRWWLRLLETWLLPALLLVFVVRQAAVASSRGFWLAKVSAAWASHERRALVGFAERALLLRFPFGVEAGVFAAALAAAARVRRRFVAEKKKTPAACSLLPGLALGSLLACLGAFGGELLACLAVGTQSMVLTDESVWLASVAAWVLVGGRLWVSATGSTPALGGFLSLPAVHHWLVFLAEAFRASLVCRAVDAARAGGAAIAALPALAAAVAAPADGGGWTLALLAGVLAGCGGRFLPGDRGLSPLSSGVPWAVQSALYGSVCYXXXXXXXXXAGHAQAIVSLFLVCVALVQTTRCGGGPAFNPLSPLHRAAYSITGVAKAPPLPPQQADPERRLETMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGVGTVRSGQRHCRRASGSSGXXXXXRRGRGRGSRGSLAGGLGVXXXXXXXXXXXXXARGPLAEGAAGVWGTGGMGARGAGRAFVWTVAAAGIIAVSRLLHGLPTKAIIGQPLLPAQHRHQHHQQLPTAVADTTGPTGAVASGNAAPADTAASGHPE-FP--ALGGAGSAVGDAAAAAWPGAAGV--AGAECSSENGPDGAVDSRGGTSQRPP------STRPGGEDLVGLSPPQLIEQVLAAREAAADATERADTAERAA---------RRG------------FRGQRGLGREPARDEAGAPPDSAME--------------------ELSSRMMLESAVEDFSSAVGDFSEISRVWLEQVAGVHVGGGASESIVVQPQA-QDPAFSAEPPSRPTPYLDSVALGKQLLSHEPTLQHASLGGNALSEEPGQPSPHPLRPAEIHPPVSSAGSA 4671
QLRK QRR QR + G + DPR S + CC +AL WL+GV WT A+AYGGL+IVR+GRW LLL LLA SSS+ ++ ET G +G++ G GG A+ ++SLAV AVCY LT A++VR+LL +RL+RVP LGLAAE+LRA C+AAS+E ALAL+S + L LA XXXX G R R SSA NA PP + T + AG AG G +EG ++QR A AW VPSGALGG FYAL +GGVF MREY+LG WFS+ SVR LA VFAAV+ LRS+P GG FNPL PCY LLGF R + +A E T K R G+EA + G XXXXXXXXXXXXXXXXXXXXXXXXXXX G V L S + WW K G+EGD PA EC PS RLPSPAA A XX +S RG E FP S+ + GG R PP T Q R SM G + E+ S S+ G XX V +EA + R WWL ETW LP+ ++ F+VRQ + S+R FW KV AW SH R+A LL F FG EAG FAAA+ +AARVR +AE + TPA LPGLALGSLL CLGAFGG +LACL GT+SMVLT VW A+VAAWVLVGGRLW G +L LSLP HH LVFL+EAFRASL+C A+D A R ++PL A ++A C HA+A+VSLF V VALVQT+R GGGP FNP S LHR AY++ G+ K P P P + XXXXXXXXXXXX + H ++ SS RRGRGRGSRGSLA GLG RG A G GVWG G +GARGAGRA VWT AA ++ +SRLL L T A+ L HR HQ+ P T G P + G PE FP +GG VGDA A+A GAAG G E GA DS G TS RPP G EDL + P QLIEQV+AAR AA +A +RAD AE AA R G G G E AR G +S E E S+ +L +AVED+SS VG+FSE+S+ WLE+VA G + + V QA +D AF R TP AL KQ L HEP A L G+ L EE G+ SP P A P AGS+
Sbjct: 53 QLRKWQRR--QQRPFASGTVSADPRTDLS-SRYRYCC---EVALHWLKGVVWTWAYAYGGLIIVRVGRWALLL-LLA-----WSSSTRALG------ET-----GKLTPEGSYWPWGRGGGGGEGDRWA-----AVTTSDDSLAVTLAVALGAAAVCYTLTGASSVRQLLWHRLLRVP---------------LGLAAELLRASCVAASSEIALALVSWGFSVSSPSLAFPYKEGREETASAEGTRAFALTLVLGFLGALACAFAGAAVSCVGGSVGXXXXXEEGRR-------GRLERTASSATNAAEPPTGGGSRSRTGTSSAVNVAAGREAGPGRREG----------ESQRVTAAAAWLVPSGALGGVFYALTSGGVFRGVMREYLLGAEWFSSPDSVRMALAMVFAAVYLLRSLPPVGG----FNPLSPCYALLGF----LRGEHHTYANDLAACWEAGLTAAKRWRRRGSEAPTPATSLTGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVLSPGRVVPLELASASSSEEKMAWW------KEPGEEGDVPAPLAASPAEGKECSPSRRLPSPAAVAXXXXXXXXXXXXXXXXXXDSSDRGVPRPESFPGGALSDDRE-PGGSGRDSERFGGMEGTASGVASGTAPTAADAINGNSGSLLRRSRPREGSGAAPPFGTGMGQGRATSMPSSIDAERGTRPEHRRLSRGSASIESSSSSSTSIGEDRQGRPGSVGPRNGRDDTASPVTGAGSEGRVGGAGXXASGGARTVGDALRLLSEAVVAERSLWWL---ETWALPSAVVAFLVRQVVLESNRAFWATKVLGAWVSHGRQAF--------LLSFRFGPEAGAFAAAVVSAARVRH--LAEMR-TPA--YPLPGLALGSLLTCLGAFGGNVLACLVTGTRSMVLTGFVVWPAAVAAWVLVGGRLWAPRPGRAFSLRDLLSLPVAHHLLVFLSEAFRASLLCGAIDVA----------------------------------------------RDVAPLV-----APETAP----C------------HARAMVSLFFVSVALVQTSRRGGGPHFNPYSLLHRVAYAVLGLDKPPAPVPAPLLPALPAAGVPREFDARDIGGGRRGVAQAGGTGTVNGSWNSTAAXXXXXXXXXXXXXXXXXXXXXD-ESHRLSSNDSS------RRGRGRGSRGSLARGLGSGRPARGQAATMTTGRGRFARGVVGVWGPGRVGARGAGRALVWTAAAVAVVGMSRLL-ALSTLAMDRTQLASHDHRQHEHQEQPWRQPPTAG----------MPIEGGGEGTPEKFPDSVVGGVDGVVGDAPASAGAGAAGARKGGIRGWYERFRGGARDS-GDTSGRPPLPPVRAEVEAGAEDLASMDPAQLIEQVMAARTAAVEAADRADAAELAAAQLAIASEERTGASPGAAXXXXXXXXXMDGSGAELARRSEGGEEESEREREGLRAEPVDRTTAATAAAAEEQSKALLGAAVEDYSSVVGEFSEVSKAWLEEVAVASPTEGTGDDVKVNRQAGEDAAFQEA--KRHTPIK---ALHKQPL-HEPPPDRA-LDGDNLGEEAGRLSPSPSSTATDERPPGLAGSS 1512
BLAST of mRNA_L-elsbetiae_contig1806.5180.1 vs. uniprot
Match: A0A6H5JCS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS4_9PHAE) HSP 1 Score: 280 bits (716), Expect = 7.320e-72 Identity = 424/1262 (33.60%), Postives = 500/1262 (39.62%), Query Frame = 1
Query: 1189 TLAAVFAAVFALRSVPGGREEKFNPLVPCYRLLGFGDGAARSKQRRP-GRPVAGGGERPPTLVKS-RPIGAEATSKRLGPPQPGVCSESKVGQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVSQW------LVSKDEGDAAAGWWEARVGGKGGGQEGDDPAAPRPVRPMV-PECHPSWRLPSPAAAAAXXSPGA-------------SGRGGSGSECFPRCGSSEQSDITGGDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPSATATRQKRRASMXXXXXXXXXXXXXXGGRNDETRR-----RSVRSVPAAXXXXXXXXGXXXXXXXXXXXXHEXXXXXXXXXXXXXXXXXXXKVNVGADPGA-----------EARLEGRGRWWLRLLETWLLPALLLVFVVRQAAVASSRGFWLAKVSAAWASHERRALVGFAERALLLRFPFGVEAGVFAAALAAAARVRRRFVAEKKKTPAACSLLPGLALGSLLACLGAFGGELLACLAVGTQSMVLTDESVWLASVAAWVLVGGRLWVSATGSTPALGGFLSLPAVHHWLVFLAEAFRASLVCRAVDAARAGGAAIAALPALAAAVAAPADGGGWTLALLAGVLAGCGGRFLPGDRGLSPLSSGVPWAVQSALYGSVCYXXXXXXXXXAGHAQAIVSLFLVCVALVQTTRCGGGPAFNPLSPLHRAAYSITGVAKAPPLP-PQQADPERRLETMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGVGTVRSGQRHCRRASGSSGXXXXXRRGRGRGSRGSLAGGLGVXXXXXXXXXXXXXARGPLAEGAAGVWGTGGMGARGAGRAFVWTVAAAGIIAVSRLLHGLPTKAIIGQPLLPAQHRHQHHQQLPTAVADTTGPTGAVASGNAAPADTAASGHPE-FP--ALGGAGSAVGDAAAAAWPGAA-----GVAGAECSSENGPDGAVDSRGGTSQRPPS------TRPGGEDLVGLSPPQLIEQVLAAREAAADATERADTAERAARRGFRGQRGLGREPARDEAGAPPDSAMEEL----------------------------------------------SSRMMLESAVEDFSSAVGDFSEISRVWLEQVAGVHVGGGASESIVVQPQAQD--PAFSAEPPSRPTPYLDSVALGKQLLSHEPTLQHASLGGNALSEEPGQPSPHPLRPAEIHPPVSSAGSA 4671
TLA VFAAV+ LRS+P R FNPL PCY LLGF G A Q +A E K R G+EA P P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG +S L + WW K G+EGD PA P RP EC PS RLPSPAA XX S RG E FP S+ + TGG R PP T Q R SM GG E R S+ S XXXXXXX G GA A EA + R WWL ETW LP ++ F+VRQA LL F FG EAG FAAA+ +AARVR + P LPG+ALGSLL CLGAFGG +LACL GT+SMVLT+ VW A+VAAW+LVGGR G +L LSLP VHH LVFL+EAFRASL+C A+D AR AP L+A A C HA+A+VSLF V VALVQT+R GGGP FNP S LHR AY++ G+ K PP P++ D G G+ R R +S RRGR RGSRGSLA GLG RG A G GVWG G +GARG GR VWT AA ++ +SRLL L T A+ HR HQ+ P T G P + G PE FP +GG AVGDA A A GAA G+ G +G G+ D TS RPPS G EDL + P QLIEQV+AAR+AA +A +RAD AE AA Q + E + G P +A S+ +L +AVED+SS VG+FSE+S+ WLE++A + G + + V QA + P A+ P P AL +Q HEP L G+ L +E + SP P A P AGS+
Sbjct: 2 TLAMVFAAVYLLRSLPAERAGGFNPLSPCYALLGFFRGEACLNQHHTYANDLAACWEAGLAAFKRWRGRGSEA-------PTPATSLTGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLSPGRVVPLELAPSSSSEEKMAWW------KEPGEEGDVPA-PLVARPAGGKECSPSRRLPSPAAVXXXXXXXXXXXXXXXXXXXXXSDRGVPRPESFPGGALSDDRE-TGGSGRDSERFGGMEGTASGVASGTAPTAADANNGNSWSLLRRNRPREGSGAAPPFGTGMGQGRATSMPSSTDAR-------GGTRPEHGRLSHGSASIESSSXXXXXXXXXIGEDRQGRPGSVGPRNGRDDAASPATGAGSEGRVSGAGGGASGRARTARDVLRLLSEAMVAERSLWWL---ETWALPLAVVAFLVRQA--------------------------------FLLSFRFGPEAGAFAAAVVSAARVRHLAEMRRPAYP-----LPGVALGSLLTCLGAFGGNVLACLVTGTRSMVLTEFVVWPAAVAAWMLVGGR-----PGRAFSLRDLLSLPVVHHLLVFLSEAFRASLLCGAIDVAR---------------TVAP---------LVAPETAPC-------------------------------------------HARAMVSLFFVSVALVQTSRRGGGPHFNPYSLLHRVAYAVLGLDKPPPAGLPREFDAR------------------DIGGGRRVVEQAGGTGTADGSWNATAAAAGAWFAAGSGMSASRRSDDSHRLSS-----NVPSRRGRDRGSRGSLARGLGSGRPARGRSATVTTGRGCFARGVVGVWGPGRVGARGVGRTLVWTAAAVAVVVMSRLL-ALSTLAMDRTQSASHDHRQHEHQEQPWRQPSTAG----------MPFEGGGGGTPEKFPDSVVGGVDGAVGDAPAGAGAGAAEARKGGIRGWYERFRSGAKGSGD----TSGRPPSPPVRAEVEAGAEDLADMDPAQLIEQVMAARKAAVEAADRADAAELAA-----AQLAIASE---ERTGTSPGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAXXXATAKQSKALLGAAVEDYSSVVGEFSEVSKAWLEEMAVANPTEGTGDDVKVNRQAGEDVPFQEAKHPHAPI-----QALHRQP-PHEPPPDRTPLDGDNLGKEATRISPSPSSTATYERPPGLAGSS 1077
BLAST of mRNA_L-elsbetiae_contig1806.5180.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.650e-11 Identity = 65/226 (28.76%), Postives = 102/226 (45.13%), Query Frame = 1
Query: 2650 AFGGELLACLAVGTQSMVLTDESVWLASVAAWVLVGGRLWVSATGSTPALGGFLSLPAVHHWLVFLAEAFRASLVCRAVDAARAGGAAIAALPALAAAVAAPADGGGWTLAL----LAGVLAGCGGRFLPGDRGLSPLSSGVPWAVQSALYGSVCYXXXXXXXXXAGH----------------AQAIVSLFLVCVALVQTTRCGGGPAFNPLSPLHRAAYSITGV 3267
AFGG +LA +G ++ ++ + V + W + + + ++ P + ++ L+E FRA+ +C V L+ ++ P G + +AL L G + GCGG FLP D+GL L +G PW +QSA YGS+ + + +AIV+ FL VAL QT PAFNP +P+H Y++TGV
Sbjct: 83 AFGGGILAPFLLGKPPVMFVNDLI--------VPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVV--------------LSNSILKP--GKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLI---SPAFNPFTPVHNVVYTVTGV 281 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1806.5180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1806.5180.1 >prot_L-elsbetiae_contig1806.5180.1 ID=prot_L-elsbetiae_contig1806.5180.1|Name=mRNA_L-elsbetiae_contig1806.5180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1811bp QLRKQQRRRTHQRHDSRGAAATDPRLSPSPGLFDRCCCCCSIALGWLRGVback to top mRNA from alignment at L-elsbetiae_contig1806:4084..17105+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1806.5180.1 ID=mRNA_L-elsbetiae_contig1806.5180.1|Name=mRNA_L-elsbetiae_contig1806.5180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13022bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:4084..17105+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1806:4084..17105+ >mRNA_L-elsbetiae_contig1806.5180.1 ID=mRNA_L-elsbetiae_contig1806.5180.1|Name=mRNA_L-elsbetiae_contig1806.5180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=10866bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:4084..17105+ (Laminarionema elsbetiae ELsaHSoW15)back to top |