mRNA_L-elsbetiae_contig18047.5175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18047.5175.1
Unique NamemRNA_L-elsbetiae_contig18047.5175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: A0A7S3YPU8_9EUKA (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPU8_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 3.140e-32
Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:   16 SDVDFERRAGAMDIYDAVIVDPWTWAGKGWRLKPQLKGRQQRTFILDFFGSD-KPHANLGVPLGQHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQGASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTVAPQDA 435
            SD +FER   ++D Y  + +DPWTWA +GW++KP L G +Q+ +ILDFFG D  P  N  VPL +HLTA+PV    + TFLGY +  +    +S    ++K+ GVIWGK   ++ G+  H  L+++A +V L ST APQDA
Sbjct:   27 SDSEFEREGKSLDKYSLIFLDPWTWAARGWKMKPFLHGHEQKLYILDFFGGDGHPGLNPTVPLSRHLTAYPV--HPRNTFLGYFLPDA----VSHPQGNRKKAGVIWGKDPKYYHGK--HVFLTKVASIVPLVST-APQDA 158
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: A0A6H5JS43_9PHAE (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS43_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.710e-32
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:  145 FILDFFGSDKPHANLGVPLGQHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQGASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTVAPQDA 435
            FILD+FGSD+PHANLGVPL +HLTAFP+    QRTFLGY VDP       S+ A+K+RQGVIWGKT     G     L+  LAD+VELHSTVAP+DA
Sbjct:    2 FILDYFGSDEPHANLGVPLKRHLTAFPITAEHQRTFLGYQVDPKRNKIPLSKPATKRRQGVIWGKTKDKLFGN--RRLILALADMVELHSTVAPEDA 96
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: A0A7S2U380_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U380_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 3.750e-30
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1 
Query:    7 VAVSDVDFERRAGAMDIYDAVIVDPWTWAGKGWRLKPQLKGRQQRTFILDFFGSD-KPHANLGVPLGQHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQGASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTVAPQDA 435
            VA SD +FER   ++D Y  + +DPWTWA +GW++KP L G +Q+ +ILDFFG D  P  N  VPL +HLTA+PV    + TFLGY +  ++          +K+ GVIWGK   +++G+     L+++A V  L ST APQ A
Sbjct:   53 VARSDSEFEREGKSLDKYVLIFLDPWTWAARGWKMKPFLLGHEQKLYILDFFGGDGHPALNPTVPLQRHLTAYPV--HPRNTFLGYFLPDAAPVR-----GKRKKAGVIWGKDPKYYQGK--QSFLTKVASVAPLVST-APQSA 186
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: A0A7S3UWN5_HETAK (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWN5_HETAK)

HSP 1 Score: 103 bits (256), Expect = 1.110e-23
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 VEVAVSDVDFERRAGAMDIYDAVIVDPWTWAGKGWRLKPQLKGRQQRTFILDFFGSDKPHANLGVPLG-QHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQGASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTVAPQD 432
            V+ A SD +F+R     D Y  +IVDPWT+A KGW  K  L GR++  ++L FFG+     NL + L  Q LTAFP  T+    F+GY    +S +  ++    KK QGV+WGK A + KG+    ++  +AD+ ELH+T+  +D
Sbjct:   53 VDTATSDAEFDRLGKQRDDYSVLIVDPWTYAKKGWVPKTPLVGREKDVYVLSFFGTQG-LKNLKIDLRTQVLTAFP--TAPHNDFIGYFYTDNSLAARAAAVGKKKPQGVLWGKNAKYLKGK--EAVIRAVADLCELHTTIPEKD 192
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: A0A7S0W0V7_9CRYP (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0V7_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   58 YDAVIVDPWTWAGKGWRLKPQLKGRQQRTFILDFFGSDKPHANLGVPLGQHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQGASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTV 420
            Y  +I+D WTWA +G + KP LK   ++ F+LDFFG+    A +     + LTA+P     + +FLG+ V  + + +       K RQGVIWGK A++FK R+   ++  LA +  +H T+
Sbjct:  240 YCMIILDLWTWAARGGKAKPFLKPHMKKVFLLDFFGNASTSATV-FGNSRILTAYPT---ARFSFLGWFVKEAPRRK-------KLRQGVIWGKQASYFKDRWP--VVLALARLSSIHLTI 347
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Match: D8LF21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF21_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.380e-10
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 VEVAVSDVDFERRAGAMDIYDAVIVDPWTWAGKG 102
            VEVA SD DFERRA AM +Y+AV+VDPWTWAGKG
Sbjct:   44 VEVATSDGDFERRAEAMGVYNAVVVDPWTWAGKG 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18047.5175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3YPU8_9EUKA3.140e-3245.39Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A6H5JS43_9PHAE8.710e-3262.89Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S2U380_9EUKA3.750e-3043.75Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3UWN5_HETAK1.110e-2340.00Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S0W0V7_9CRYP1.500e-1236.36Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
D8LF21_ECTSI7.380e-1079.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18047contigL-elsbetiae_contig18047:3..1949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog2880.D8LF21
Hectar predicted targeting categoryother localisation
EggNOG OGs2F12H@1,2T24T@2759
Ec32 ortholog descriptionGlycosyltransferase family 18
Ec32 orthologEc-21_006420.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18047.5175.1prot_L-elsbetiae_contig18047.5175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18047 3..1949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.401426-CDS-L-elsbetiae_contig18047:2..1021622815752.401426-CDS-L-elsbetiae_contig18047:2..102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 3..102 +
1691683079.9786472-CDS-L-elsbetiae_contig18047:2..1021691683079.9786472-CDS-L-elsbetiae_contig18047:2..102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 3..102 +
1622815752.4165351-CDS-L-elsbetiae_contig18047:1102..12771622815752.4165351-CDS-L-elsbetiae_contig18047:1102..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 1103..1277 +
1691683079.9897513-CDS-L-elsbetiae_contig18047:1102..12771691683079.9897513-CDS-L-elsbetiae_contig18047:1102..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 1103..1277 +
1622815752.4274366-CDS-L-elsbetiae_contig18047:1786..19491622815752.4274366-CDS-L-elsbetiae_contig18047:1786..1949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 1787..1949 +
1691683079.9992476-CDS-L-elsbetiae_contig18047:1786..19491691683079.9992476-CDS-L-elsbetiae_contig18047:1786..1949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 1787..1949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18047.5175.1

>prot_L-elsbetiae_contig18047.5175.1 ID=prot_L-elsbetiae_contig18047.5175.1|Name=mRNA_L-elsbetiae_contig18047.5175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
VEVAVSDVDFERRAGAMDIYDAVIVDPWTWAGKGWRLKPQLKGRQQRTFI
LDFFGSDKPHANLGVPLGQHLTAFPVPTSQQRTFLGYHVDPSSQSEISSQ
GASKKRQGVIWGKTATFFKGRFTHDLLSRLADVVELHSTVAPQDAT
back to top

mRNA from alignment at L-elsbetiae_contig18047:3..1949+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18047.5175.1 ID=mRNA_L-elsbetiae_contig18047.5175.1|Name=mRNA_L-elsbetiae_contig18047.5175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1947bp|location=Sequence derived from alignment at L-elsbetiae_contig18047:3..1949+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAAGTTGCCGTGTCGGACGTCGACTTCGAAAGACGAGCCGGCGCCAT
GGACATCTACGACGCTGTCATCGTCGACCCATGGACTTGGGCAGGAAAAG
GTACAGCAGGGCAGGCCGCCAGAAAGGTTATGTTTCGAGCGGGATGTACC
ACGAGGAAGCGACGTGAACTGCAAATGTTCTTCTCTGTGGTTGGCGTGGT
ATGGCCCGTCTAGGACAATTTGTTCAATCGCGTTTTGTCCGATAACTCTT
GTTGGAGAGATAAGTGGAACGTGAGACAACGATAGTCGTGACCGCCTCGT
CGAGCTGCGTCGATAGCTTCAAACATTTGTTCATTTTGAGTCAAAGCAAC
ATTTTCGTCCAATTATACCCACGGGGCCCCATTCCTACAACACGGAACCC
CCTTCTGTACCACGGAGCCCCGCAGCTAATTTGCTGCACCCCCAAGCTAT
ACTGGAAAAAGACTGCAACAAAATATGGAATATCTCGAGAACCAGATTTT
TTGTTAAAAATCGGAATAAATTAGGTGTGGGGATTGTCGAGAGGAATCGA
TTGCCGTGGTCTATTTTAAAATCCAACATATGTGTGATTATCGCAGGAGA
AAGCGAACAAAAGTTCTCTAAAATCCAGTTTTTCGCCGATAAATTTTCTG
ATTTTTACTTAAATCAAAATCGGGAAAAAAGAGGTCTGGGGAATTCCAAG
AGCTGTTCAAATCCGGTCGCAGAATTGTGTTCTGAGGAAAACACTCCCCA
GAAAAAAGCGAACAATTTTTCAAGGATATTTGGCGACAACAGACGAACAA
AACCAATATAAAAAAATCGCTTTCTACAGGGACACGCGCCTGGTTGTTTG
CCGGTTCTTTCGGTTTACGGAACAACCACCTGTGTGCAGAGAGGAAAGTG
CACCAAAGGGCAGGTCCCAATTATTGTGGACATTTTGCCCTGGACGAACC
ATACGTCGCTACGAAAACAATAGTTCTGATTTCGTGCAGTTACTGACAGA
TCATGGGCTGTTTGTTTCGGCTTTCATCAGGCAAATAAACAAATTAGACG
TTTTTTTCTCTCACCGTGATTTGTTCTCGACACCGCCACGCACCCCACAG
GCTGGAGACTTAAGCCACAGCTAAAAGGCCGACAACAAAGAACTTTCATC
TTGGATTTTTTCGGCTCGGACAAGCCGCACGCCAACCTGGGAGTGCCACT
GGGCCAGCACCTGACGGCCTTTCCGGTTCCCACATCGCAGCAACGCACAT
TCCTGGGTTATCACGTGGATCCTAGGTGAGCTCACCCAAGCATCATTCGA
ATCGCGTACATACGATGAGATTTTGGGTCGTTGTCATTCGTGTTCCTCTT
TTCTATATCGCGGTGTAAACGGACGCCGAAACGATGTAGAATATCAAATA
TCCTCCACGGGTGCACATTTTATGGTTGCGGCAGTAACGGGCGCGCCCCA
AACGCCACGGTTATCTAAACGCTTCCCGTTCAAAAAGTGTATAGTCGAAG
TGACAGTGTTTGGTGATACAGGCTATACTGTATGTAGTACTACGGTTCAC
CTCGAGCAGGCTCGGCCAGCCTTTCGCTGAGCTCCCCCCTCTCCCAAAAG
CACGGAGGGAGAATAATCAGCCCGGGCCTAACTGTGCGCACCAGTTAAGC
GATCGGCGTATACTTTACACCGGTCCACTCGTGGAGGAGCTGACATGAAC
GTGTTTCAAATGCGCGCCATCCACGCGCGCGCGCTTTCTCTCCCTCTCTC
TCGTGTGTGTGCTTTGTTTTGGCTGTGCTCTGAGCAGCCAGAGCGAGATA
TCGTCGCAAGGAGCCTCGAAAAAGCGACAAGGTGTTATCTGGGGCAAGAC
CGCGACCTTTTTCAAAGGACGCTTTACCCACGATCTCCTCTCCAGACTTG
CAGATGTCGTAGAGCTGCACTCCACAGTTGCACCCCAAGATGCTACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18047:3..1949+

>mRNA_L-elsbetiae_contig18047.5175.1 ID=mRNA_L-elsbetiae_contig18047.5175.1|Name=mRNA_L-elsbetiae_contig18047.5175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig18047:3..1949+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAAGTTGCCGTGTCGGACGTCGACTTCGAAAGACGAGCCGGCGCCAT
GGACATCTACGACGCTGTCATCGTCGACCCATGGACTTGGGCAGGAAAAG
GTGGAAGTTGCCGTGTCGGACGTCGACTTCGAAAGACGAGCCGGCGCCAT
GGACATCTACGACGCTGTCATCGTCGACCCATGGACTTGGGCAGGAAAAG
GCTGGAGACTTAAGCCACAGCTAAAAGGCCGACAACAAAGAACTTTCATC
TTGGATTTTTTCGGCTCGGACAAGCCGCACGCCAACCTGGGAGTGCCACT
GGGCCAGCACCTGACGGCCTTTCCGGTTCCCACATCGCAGCAACGCACAT
TCCTGGGTTATCACGTGGATCCTAGGCTGGAGACTTAAGCCACAGCTAAA
AGGCCGACAACAAAGAACTTTCATCTTGGATTTTTTCGGCTCGGACAAGC
CGCACGCCAACCTGGGAGTGCCACTGGGCCAGCACCTGACGGCCTTTCCG
GTTCCCACATCGCAGCAACGCACATTCCTGGGTTATCACGTGGATCCTAG
CAGCCAGAGCGAGATATCGTCGCAAGGAGCCTCGAAAAAGCGACAAGGTG
TTATCTGGGGCAAGACCGCGACCTTTTTCAAAGGACGCTTTACCCACGAT
CTCCTCTCCAGACTTGCAGATGTCGTAGAGCTGCACTCCACAGTTGCACC
CCAAGATGCTACGCAGCCAGAGCGAGATATCGTCGCAAGGAGCCTCGAAA
AAGCGACAAGGTGTTATCTGGGGCAAGACCGCGACCTTTTTCAAAGGACG
CTTTACCCACGATCTCCTCTCCAGACTTGCAGATGTCGTAGAGCTGCACT
CCACAGTTGCACCCCAAGATGCTACG
back to top