mRNA_L-elsbetiae_contig18017.5168.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18017.5168.1
Unique NamemRNA_L-elsbetiae_contig18017.5168.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: D8LI88_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI88_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 2.790e-61
Identity = 101/117 (86.32%), Postives = 112/117 (95.73%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            +EAVASDVDGTLTTPEVTVT RTK+AIKAV++S L FFPATGKTRTGMYKILGE+++AHLK KDTPGVF QGLVVYSGAGDEVL+E+LLDVEIVSQVASFCEE+GVSLIAYSGD+IV
Sbjct:   96 VEAVASDVDGTLTTPEVTVTPRTKDAIKAVLNSELAFFPATGKTRTGMYKILGEDIAAHLKTKDTPGVFIQGLVVYSGAGDEVLYERLLDVEIVSQVASFCEERGVSLIAYSGDEIV 212          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A6H5KW38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW38_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.410e-38
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 1
Query:  115 PATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            P   +TRTGMYKILGE+++AHLKAKDTPGVF QGLVVYSGAGDEVL+E+LLD+EIVSQVASFCEE+GVSLIAYSGD+IV
Sbjct:   16 PRARQTRTGMYKILGEDIAAHLKAKDTPGVFIQGLVVYSGAGDEVLYERLLDIEIVSQVASFCEERGVSLIAYSGDEIV 94          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A836C834_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C834_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.070e-29
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYS-GAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I+AVASD+DGT T P++ V  R  +AI A +DSG+VFFPATGK+R GM   LG      LKA+  PGV+ QGLVVY  G   +V++E+LL  +I  +VA FC ++ +SLIAYSGD IV
Sbjct:   67 IKAVASDIDGTCTAPDLQVPQRVMDAIVATLDSGIVFFPATGKSRAGMMNTLGPAGDI-LKARGAPGVYIQGLVVYGPGPDSKVIYERLLGADIGREVAQFCRDRNMSLIAYSGDRIV 183          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A7S3XQN8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN8_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.250e-23
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I A+ASD+DGTL   +  V+ R  E I+     G++FFPATGK+R G+Y  LGE     LK ++ PGVF QGL+VY   G+ V+ E LL +E V +V  FC  +G+SL+AY  D I+
Sbjct:   37 ITAIASDIDGTLLNSKQQVSQRNVETIQRARKKGILFFPATGKSRQGVYNALGE-FGQELKKENCPGVFLQGLIVYDQNGN-VIHEMLLPLEPVKKVVQFCTREGISLVAYHRDRIL 151          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: W7TL95_9STRA (Cof-like hydrolase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL95_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.130e-19
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILG---EELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I  VASDVDGTL     T++ RT  +I+A+   G++F PATGK+R G+   LG   EEL++ +    T GV+ QGL+VY G   EV++E++LD ++   V  F  E+ VSLIA++GD I+
Sbjct:   76 IVLVASDVDGTLLGSSHTISPRTIASIRALRKKGILFVPATGKSRGGVRNALGALGEELTSSMA---TGGVYLQGLIVYKGG--EVIYERMLDPQVALDVMRFARERNVSLIAFNGDRIL 190          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A2E0L2P0_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0L2P0_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-17
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSG 339
            I+ +  D+DGTL   E  +T RT++AIKA    G+    ATGKTR    K++ +         DTPG++ QGLVV+  AG  +L ++ LD  +V QV +F E++G SLIAYSG
Sbjct:    5 IKLIVVDLDGTLLNAEHEITERTQDAIKAAQAQGVKVVLATGKTRGSALKVIDQ------LGLDTPGIYVQGLVVHDAAGS-ILRQETLDPAVVRQVITFAEDRGFSLIAYSG 110          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A5J4YU78_PORPP (Putative phosphatase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU78_PORPP)

HSP 1 Score: 85.5 bits (210), Expect = 2.370e-17
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I+ VASDVDGTL T   T+       I  +MD+G+ FFPATGK+R G      E L + L    +PGV+ QGLVVY   G E+L+E+ L+  +V++VA    +   + +AYSGD I+
Sbjct:   77 IKVVASDVDGTLLTTGHTLPDDVSRTIVEMMDAGIAFFPATGKSRIGALNSFCEPLKSRLGVT-SPGVYLQGLVVYKEGG-ELLYERALEPGVVAKVAQKARDLDCAWVAYSGDRIL 191          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: UPI00199D9B5D (HAD family hydrolase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI00199D9B5D)

HSP 1 Score: 80.9 bits (198), Expect = 9.580e-16
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I+ +A D+DGTL   +  +T RT +A+KA M  G+    ATGKTR    K + E     L  +DTP +  QGLVV++G G  + ++Q L+ +++ QV +F EE+G +++AYSG  ++
Sbjct:   12 IKLIAVDLDGTLLNSKHELTPRTIKALKAAMAKGVKVILATGKTRRANEKFIEE-----LGLQDTPSICVQGLVVHNGDGS-IRYQQTLEPKVLRQVVTFAEERGFTILAYSGQRVL 122          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A7S1ESZ3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESZ3_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 3.570e-15
Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I A+A DVDGTL      +     + I   M+SG+VFFPATGK+R G     G  LS  L   ++ GVF QGL+VY G G E+++E+ L  E +S+V     +  +  I Y GD +V
Sbjct:   93 ITAIACDVDGTLLDSNHYLDPSLSKLIVDTMESGIVFFPATGKSRAGAMHSFGPPLSTVL-GSNSMGVFLQGLLVY-GQGGELIYEKTLPTETISKVVQLSSQANIPWIGYLGDRLV 207          
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Match: A0A6L9ILP6_9CHLR (Cof-type HAD-IIB family hydrolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9ILP6_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 6.950e-14
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASFCEEKGVSLIAYSGDDIV 351
            I+ V  DVDGTL   +  V++RT+ A+KA +  G+    ATGKTR     ++       LK   TPG++SQGL+VY G G+ VL +Q LD  I   V +F E++G  ++AYSG  I+
Sbjct:   23 IKLVVIDVDGTLLNSQHQVSARTEAAVKAAIAQGVQVMLATGKTRGAATSLIKR---FDLK---TPGIYSQGLMVYDGDGN-VLHQQTLDAAISRLVITFAEDRGFVVLAYSGTRIL 132          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18017.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI88_ECTSI2.790e-6186.32Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A6H5KW38_9PHAE8.410e-3883.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C834_9STRA1.070e-2954.24HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3XQN8_HETAK2.250e-2347.01Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TL95_9STRA4.130e-1945.00Cof-like hydrolase n=3 Tax=Monodopsidaceae TaxID=4... [more]
A0A2E0L2P0_9CHLR1.350e-1743.36Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
A0A5J4YU78_PORPP2.370e-1743.59Putative phosphatase n=1 Tax=Porphyridium purpureu... [more]
UPI00199D9B5D9.580e-1639.32HAD family hydrolase n=1 Tax=Burkholderiales bacte... [more]
A0A7S1ESZ3_9RHOD3.570e-1541.03Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6L9ILP6_9CHLR6.950e-1441.88Cof-type HAD-IIB family hydrolase n=1 Tax=Chlorofl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18017contigL-elsbetiae_contig18017:2188..2857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.5e-49
Seed eggNOG ortholog2880.D8LI88
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009657,GO:0009658,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901259,GO:1901360
EggNOG free text desc.Sucrose-6F-phosphate phosphohydrolase
EggNOG OGs2S1YA@2759,COG0561@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.7285476-CDS-L-elsbetiae_contig18017:2187..24091622815751.7285476-CDS-L-elsbetiae_contig18017:2187..2409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18017 2188..2409 -
1691683079.5130203-CDS-L-elsbetiae_contig18017:2187..24091691683079.5130203-CDS-L-elsbetiae_contig18017:2187..2409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18017 2188..2409 -
1622815751.7381914-CDS-L-elsbetiae_contig18017:2728..28571622815751.7381914-CDS-L-elsbetiae_contig18017:2728..2857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18017 2729..2857 -
1691683079.5250797-CDS-L-elsbetiae_contig18017:2728..28571691683079.5250797-CDS-L-elsbetiae_contig18017:2728..2857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18017 2729..2857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18017.5168.1prot_L-elsbetiae_contig18017.5168.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18017 2188..2857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18017.5168.1

>prot_L-elsbetiae_contig18017.5168.1 ID=prot_L-elsbetiae_contig18017.5168.1|Name=mRNA_L-elsbetiae_contig18017.5168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
IEAVASDVDGTLTTPEVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYK
ILGEELSAHLKAKDTPGVFSQGLVVYSGAGDEVLFEQLLDVEIVSQVASF
CEEKGVSLIAYSGDDIV
back to top

mRNA from alignment at L-elsbetiae_contig18017:2188..2857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18017.5168.1 ID=mRNA_L-elsbetiae_contig18017.5168.1|Name=mRNA_L-elsbetiae_contig18017.5168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=670bp|location=Sequence derived from alignment at L-elsbetiae_contig18017:2188..2857- (Laminarionema elsbetiae ELsaHSoW15)
ATTGAAGCCGTTGCGAGCGACGTGGACGGCACCCTCACCACGCCGGAGGT GACAGTGACGTCTCGGACTAAGGAGGCGATAAAGGCTGTCATGGACTCTG GTCTGGTGTTTTTTCCTGCCACGGGGAAGGTGAGTGTCCACGTACGTAGA ATATGTAGGTATGCTTTTGAGACCTCCCCTCGACTTTCCCCGTTCATGTT CGCCATGTAGCACGTACATACCAGAAGTACTAAGGTACAGCATACACTTC TATTAGATTATGTATCTAGTCTACAGCAGTAGGACCACTGTCGGACATGA AGTGTAGTTTGTTTCACCCTACAACAGCAGTTGCAGCGCCGACCTTTTTC TCGGCATTGAAGTACCTTATAGTCGACCTTGTTCTCGGCATTGAAGTAGG TGTGCACGCCGACCTGACAGAACCAACCCTCGTTACAATTTCAAGCAGAC CCGCACGGGAATGTATAAAATCTTGGGAGAAGAGCTAAGCGCGCATTTAA AGGCCAAGGATACACCAGGCGTCTTCAGCCAAGGGCTAGTGGTCTACTCC GGAGCCGGTGACGAGGTGCTGTTTGAGCAGCTGCTAGACGTGGAGATTGT GTCGCAGGTGGCGAGCTTCTGCGAGGAGAAGGGGGTCTCGCTTATAGCCT ACAGCGGTGACGACATCGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18017:2188..2857-

>mRNA_L-elsbetiae_contig18017.5168.1 ID=mRNA_L-elsbetiae_contig18017.5168.1|Name=mRNA_L-elsbetiae_contig18017.5168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig18017:2188..2857- (Laminarionema elsbetiae ELsaHSoW15)
ATTGAAGCCGTTGCGAGCGACGTGGACGGCACCCTCACCACGCCGGAGGT
GACAGTGACGTCTCGGACTAAGGAGGCGATAAAGGCTGTCATGGACTCTG
GTCTGGTGTTTTTTCCTGCCACGGGGAAGATTGAAGCCGTTGCGAGCGAC
GTGGACGGCACCCTCACCACGCCGGAGGTGACAGTGACGTCTCGGACTAA
GGAGGCGATAAAGGCTGTCATGGACTCTGGTCTGGTGTTTTTTCCTGCCA
CGGGGAAGACCCGCACGGGAATGTATAAAATCTTGGGAGAAGAGCTAAGC
GCGCATTTAAAGGCCAAGGATACACCAGGCGTCTTCAGCCAAGGGCTAGT
GGTCTACTCCGGAGCCGGTGACGAGGTGCTGTTTGAGCAGCTGCTAGACG
TGGAGATTGTGTCGCAGGTGGCGAGCTTCTGCGAGGAGAAGGGGGTCTCG
CTTATAGCCTACAGCGGTGACGACATCGTGACCCGCACGGGAATGTATAA
AATCTTGGGAGAAGAGCTAAGCGCGCATTTAAAGGCCAAGGATACACCAG
GCGTCTTCAGCCAAGGGCTAGTGGTCTACTCCGGAGCCGGTGACGAGGTG
CTGTTTGAGCAGCTGCTAGACGTGGAGATTGTGTCGCAGGTGGCGAGCTT
CTGCGAGGAGAAGGGGGTCTCGCTTATAGCCTACAGCGGTGACGACATCG
TG
back to top