mRNA_L-elsbetiae_contig18010.5166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18010.5166.1
Unique NamemRNA_L-elsbetiae_contig18010.5166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: D7G4Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.280e-37
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:   16 SGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASEKSKGPFAG 213
            SGSPTEARTY DIEAVCAWARKN+L+EGEDGSGKNKGHGLILYGQSVGSGPTC+LAS+KSKGPFAG
Sbjct:  136 SGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGPFAG 201
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.470e-34
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:   16 SGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASEKSKGPFAG 213
            SGSPTEARTY DIEAVCAWARKN+L+EGEDGSGKNKGHGLILYGQSVGSGPTC+LAS+KSKG FAG
Sbjct:  190 SGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGSFAG 255
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A6G0XWZ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWZ8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.970e-8
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASEK 192
            GG SG+P+EA TY DI AV  + ++N+  +            +ILYGQSVGSGP+ FLAS++
Sbjct:  126 GGASGTPSEANTYADITAVYNYVKENMSSD--------PAQDIILYGQSVGSGPSIFLASQQ 179
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 1.060e-7
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:   28 TEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASE 189
            TE  TY DIEA C W  +NI          N    LILYGQSVGSGP+C+ AS 
Sbjct:  135 TEPDTYADIEAACQWVIENISS--------NPAEDLILYGQSVGSGPSCYYASR 180
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A0D2UGU8_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2UGU8_GOSRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.930e-7
Identity = 32/61 (52.46%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASE 189
            GG+SG PTE  TY DIEAV    +K      ED         LI+YGQSVGSGPT  LAS 
Sbjct:   40 GGSSGKPTELNTYYDIEAVYNCLKKEYGVTQED---------LIIYGQSVGSGPTLHLASR 91
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A0D2TJZ0_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2TJZ0_GOSRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.210e-7
Identity = 32/61 (52.46%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASE 189
            GG+SG PTE  TY DIEAV    +K      ED         LI+YGQSVGSGPT  LAS 
Sbjct:   19 GGSSGKPTELNTYYDIEAVYNCLKKEYGVTQED---------LIIYGQSVGSGPTLHLASR 70
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A1W0AB71_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB71_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.580e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASEKSK 198
            GG +G PTEA TY DIEA+  +A K++    +          +ILYGQSVGSGP+ +LA+++ +
Sbjct:  131 GGATGRPTEANTYCDIEAIFEFATKHLGYAADS---------IILYGQSVGSGPSVYLAAKEHR 185
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A0D2RUM5_GOSRA (Hydrolase_4 domain-containing protein n=16 Tax=Gossypium TaxID=3633 RepID=A0A0D2RUM5_GOSRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.730e-7
Identity = 32/61 (52.46%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASE 189
            GG+SG PTE  TY DIEAV    +K      ED         LI+YGQSVGSGPT  LAS 
Sbjct:  107 GGSSGKPTELNTYYDIEAVYNCLKKEYGVTQED---------LIIYGQSVGSGPTLHLASR 158
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BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A194YSQ7_SORBI (Hydrolase_4 domain-containing protein n=26 Tax=Poaceae TaxID=4479 RepID=A0A194YSQ7_SORBI)

HSP 1 Score: 53.5 bits (127), Expect = 1.340e-6
Identity = 32/64 (50.00%), Postives = 36/64 (56.25%), Query Frame = 1 
Query:    7 GGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASEKSK 198
            G ++G P+E  TY DIEAV    +K    E ED         LILYGQSVGSGPT  LAS   K
Sbjct:  109 GASTGKPSEYNTYNDIEAVYDCLKKEYGIEEED---------LILYGQSVGSGPTLHLASRLEK 163
[Close]
BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Match: A0A2I0BBX1_9ASPA (AB hydrolase-1 domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BBX1_9ASPA)

HSP 1 Score: 53.5 bits (127), Expect = 1.410e-6
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   13 NSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQSVGSGPTCFLASE 189
            +SG PTE  TY DIEAV    +++   E ED         +ILYGQSVGSGPT  LAS 
Sbjct:  113 SSGKPTEYNTYADIEAVYECLKESYKVEDED---------IILYGQSVGSGPTLELASR 162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18010.5166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z1_ECTSI2.280e-3792.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNT2_9PHAE1.470e-3490.91Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A6G0XWZ8_9STRA9.970e-846.77Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6S9I0E5_HETAK1.060e-751.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0D2UGU8_GOSRA5.930e-752.46Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A0D2TJZ0_GOSRA6.210e-752.46Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A1W0AB71_9STRA9.580e-743.75Hydrolase_4 domain-containing protein n=1 Tax=Thra... [more]
A0A0D2RUM5_GOSRA9.730e-752.46Hydrolase_4 domain-containing protein n=16 Tax=Gos... [more]
A0A194YSQ7_SORBI1.340e-650.00Hydrolase_4 domain-containing protein n=26 Tax=Poa... [more]
A0A2I0BBX1_9ASPA1.410e-650.85AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18010contigL-elsbetiae_contig18010:911..3098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.5e-29
Seed eggNOG ortholog2880.D7G4Z1
KEGG koko:K10908,ko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
EC2.7.7.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001050.1
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.6325803-CDS-L-elsbetiae_contig18010:910..10001622815751.6325803-CDS-L-elsbetiae_contig18010:910..1000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18010 911..1000 -
1691683079.464034-CDS-L-elsbetiae_contig18010:910..10001691683079.464034-CDS-L-elsbetiae_contig18010:910..1000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18010 911..1000 -
1622815751.644177-CDS-L-elsbetiae_contig18010:2975..30981622815751.644177-CDS-L-elsbetiae_contig18010:2975..3098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18010 2976..3098 -
1691683079.4770064-CDS-L-elsbetiae_contig18010:2975..30981691683079.4770064-CDS-L-elsbetiae_contig18010:2975..3098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18010 2976..3098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18010.5166.1prot_L-elsbetiae_contig18010.5166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18010 911..3098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18010.5166.1

>prot_L-elsbetiae_contig18010.5166.1 ID=prot_L-elsbetiae_contig18010.5166.1|Name=mRNA_L-elsbetiae_contig18010.5166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
GGGGNSGSPTEARTYGDIEAVCAWARKNILKEGEDGSGKNKGHGLILYGQ
SVGSGPTCFLASEKSKGPFAG
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mRNA from alignment at L-elsbetiae_contig18010:911..3098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18010.5166.1 ID=mRNA_L-elsbetiae_contig18010.5166.1|Name=mRNA_L-elsbetiae_contig18010.5166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2188bp|location=Sequence derived from alignment at L-elsbetiae_contig18010:911..3098- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGGGGCGGGAACAGCGGCTCGCCCACGGAGGCGAGAACGTACGGGGA
CATCGAGGCGGTGTGCGCGTGGGCGCGAAAAAACATCCTGAAGGAGGGGG
AGGACGGCAGCGGGAAGAACAAGGTGATCCCGATCCCCCCCCCCCCCCCC
CCCCCCCCGCCCCCCTGGCGCCCGCCGCGCGGTGGTGGCTGGCGTGCACA
CACACACGCCCTCGTTTGACACAGGATCGCCTTCGTGAAGAATTGTATAT
ATGGAAATAAGAGACAGGGGTTCCGTAATTCGAAGAATTCCTGTCTACCG
TAATCATGCGAAGGTTGGCATCCCCGTGTTGGCGTATTTCTATATGTAGC
ATATTTCTCCACAACCAGGAGGGTACCACTGCCGAAAAGGGTGGTTTTCG
AAACGTCTCGTCGGGGGCTTTCCAGAGGGGTATCAGTTAGTGTTCGCACC
CTCCCTGGTTGTGGAGAAATACGCTTTAGAAAAATGCTTTTAACACGGGG
GTGCGATAACCCGCATGCTTACGGTATGTATATAGGAAAGTGATAGACAG
GGGTTCCGTCGGTAACAACCGCAACCCTAACCCCTGACGGACCCCCCATT
AGCCGTTTCCACATGTACATTATCCCATGCGATTTTTCTTCCAGTAAAAC
TCGCGAAGGCCACATAAATACCGTGCATAGGTGACACAAGATACCACACC
CCCTGGACACATTTTCAAAGCTCGATTCCCCCCCAGCAAGAAGAGTCCCA
GTGCCGAAAGGGAGTGGCGTTGGAAAGATCTAATCGAGGGCTGTCCGAAA
ACGTGTCGTACGGTGCCGGCACCTTCTTCGTTACGGAGTAATGGAGCTCT
AAAATTTGGCCAAGGGGGTGTGGTATCTTGTGTCACCTGCGGTAGCTGGC
ACAAGACCACCACACCCCCCACACTCCAACCGCGAGCCTCTGCCGCGTTG
TCGAGCCCAGTGCCCTTATCACGGCCCATCTCCGTAGTTTTCGGCCGTCT
CTTCTTCTGACGTCAACCTCCGAGGCCACAGGGGGAGGCTAAATTCTAGG
GGGGGGGCGGCGTGTTTCTATGTCGGAACAGATCGCCCACTGCTACCGCG
TGCGGGCCTTACTGAGCTCTCGGCTCTTTTCGAGAGTTGACTGATTTCAG
AGCCAATGGGGCATCAAGAAGGCTCTCTGCTGTCTTTTCGAGAGTTGGCT
GATTTCAGAGCCGATTGGGCAACAAAAGTAGAGGCTTTCGGTGCCCGATG
TCGAGAGTTTTAGAGTGGACCCGCCGCGCGAGGTGAAGAGGCTTTGTGGG
TGCGTGGCTTTTTTGTGAGAGAGGTGCGTATGTAGGCAGGCCCACCGTAC
CGCCGCCGCTGTATCTGCTGTGCCGCTCGCGTTGGCAACCGGGAGAGAGA
GAGAGGGAAAGAGAGGCGGGGGGTGATGGGGACCGCCTTCCCTAACCTTA
TACCGTAATCATGCGAAGGTTCGCACCCCCGTGTTGGCGTTTTTCTATAA
GCGTGTTTCTCCACAACCAGGAGGGTACCACTGCCGAAAATGGGGGCTTT
CGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCA
TCCTCCTGGTTGTTGGGAAATTCGTTTTAGAAAAATGCTTTTAACACGGG
GGTGCGAACCTTCGCATGATTACGGTATAACCCCAAACCGACGCCCATTA
CCCGTTTACATGCTTTATCCTGCATGATTTATTGCAGTAAAACATGCGGA
AGGCTGCTGAGAGAGCCGGGCAAGTTGAGCCGCTGTGTTGGCCCGTCCGG
ACCGAAGCTCCTTTCGGACTCTTAAATGTAACAATTCCTCGTTCTGCTGG
CGAAGCACACACTTCTGCGGTCATTTCCAACCCCCCCCCCCCCGCCCGAC
ACGCACTCTTCTCTCTCGAGACCCCGCGTCACAACTCACCAAAAAGCCGC
CCTCTGACTTGACTCCCGCCGTACCCCCCTTACTCCCGTTCCGAACCCAC
CTTCCCGTCGATGCCGCCGCCGTGATCCGATCCGGTCCGGTCCGAAATGG
GGTTTTGGTTCCATGACCAACCTCACTTGATGGGCCATGATCACACAGGG
GCACGGCTTGATTCTGTACGGGCAGAGCGTGGGCAGCGGGCCTACGTGTT
TCCTGGCCTCCGAAAAGTCCAAGGGTCCGTTCGCTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18010:911..3098-

>mRNA_L-elsbetiae_contig18010.5166.1 ID=mRNA_L-elsbetiae_contig18010.5166.1|Name=mRNA_L-elsbetiae_contig18010.5166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig18010:911..3098- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGGGGCGGGAACAGCGGCTCGCCCACGGAGGCGAGAACGTACGGGGA
CATCGAGGCGGTGTGCGCGTGGGCGCGAAAAAACATCCTGAAGGAGGGGG
AGGACGGCAGCGGGAAGAACAAGGGAGGGGGCGGGAACAGCGGCTCGCCC
ACGGAGGCGAGAACGTACGGGGACATCGAGGCGGTGTGCGCGTGGGCGCG
AAAAAACATCCTGAAGGAGGGGGAGGACGGCAGCGGGAAGAACAAGGGGC
ACGGCTTGATTCTGTACGGGCAGAGCGTGGGCAGCGGGCCTACGTGTTTC
CTGGCCTCCGAAAAGTCCAAGGGTCCGTTCGCTGGTGGGCACGGCTTGAT
TCTGTACGGGCAGAGCGTGGGCAGCGGGCCTACGTGTTTCCTGGCCTCCG
AAAAGTCCAAGGGTCCGTTCGCTGGT
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