mRNA_L-elsbetiae_contig17983.5145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17983.5145.1
Unique NamemRNA_L-elsbetiae_contig17983.5145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17983.5145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17983contigL-elsbetiae_contig17983:670..1528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size840
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17983.5145.1prot_L-elsbetiae_contig17983.5145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17983 909..1359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.1221309-UTR-L-elsbetiae_contig17983:669..9081622815749.1221309-UTR-L-elsbetiae_contig17983:669..908Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17983 670..908 +
1691683077.7254164-UTR-L-elsbetiae_contig17983:669..9081691683077.7254164-UTR-L-elsbetiae_contig17983:669..908Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17983 670..908 +
1622815749.164077-UTR-L-elsbetiae_contig17983:1359..15281622815749.164077-UTR-L-elsbetiae_contig17983:1359..1528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17983 1360..1528 +
1691683077.7592123-UTR-L-elsbetiae_contig17983:1359..15281691683077.7592123-UTR-L-elsbetiae_contig17983:1359..1528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17983 1360..1528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.139654-CDS-L-elsbetiae_contig17983:908..10981622815749.139654-CDS-L-elsbetiae_contig17983:908..1098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17983 909..1098 +
1691683077.7379575-CDS-L-elsbetiae_contig17983:908..10981691683077.7379575-CDS-L-elsbetiae_contig17983:908..1098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17983 909..1098 +
1622815749.152801-CDS-L-elsbetiae_contig17983:1117..13591622815749.152801-CDS-L-elsbetiae_contig17983:1117..1359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17983 1118..1359 +
1691683077.7486258-CDS-L-elsbetiae_contig17983:1117..13591691683077.7486258-CDS-L-elsbetiae_contig17983:1117..1359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17983 1118..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17983.5145.1

>prot_L-elsbetiae_contig17983.5145.1 ID=prot_L-elsbetiae_contig17983.5145.1|Name=mRNA_L-elsbetiae_contig17983.5145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MRGVCLFLFHGSFGVVWVIWWYVIWMRHDGMSVLSVLRVACTVCRCVCLY
VCVCVCLRRRPTSLCVCARARYVLRFVPRRRHVLVGSYFHVRRLVKSLLL
CRRVVWPGSMALEISMSVAIVKTAWKCKPEFFVGCMYTIVFCS*
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mRNA from alignment at L-elsbetiae_contig17983:670..1528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17983.5145.1 ID=mRNA_L-elsbetiae_contig17983.5145.1|Name=mRNA_L-elsbetiae_contig17983.5145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=859bp|location=Sequence derived from alignment at L-elsbetiae_contig17983:670..1528+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCGCGTCGCAAGGGTGTGTTGTTTTTGTTTTTTTAGTTTTAGTTGTC
GGAAAAAATTAGTCGTGTCCTGTCTGGCCGTTTTGGCCGCCTCGTCGCCA
CGAGCATCGTTTGCGCACTCGCAAAGGTTGGTTCGCGTGACAGCAGGAAG
ATACTAGAGGGGGTTTTGTAGTGACAGCACGCGCAGCTTTTAGTGGATCA
TCGTCACATGGCGTGCATGGATTGTGCAAGGCTTTCTCGATGCGGGGCGT
TTGTTTGTTTCTGTTCCATGGTAGTTTCGGGGTAGTATGGGTTATTTGGT
GGTACGTCATTTGGATGCGGCACGACGGGATGAGCGTGCTGAGTGTGTTG
CGCGTGGCGTGTACGGTTTGTCGATGTGTGTGCCTTTATGTGTGTGTGTG
TGTGTGCCTACGACGACGGCCAACATCCCTGACATGTGTGTGTGTGTGTG
TGTGTTTGTGCGCGCGCTCGGTACGTGCTCAGATTTGTGCCGCGTCGGCG
CCATGTGCTTGTTGGTTCTTATTTTCATGTCCGTCGTCTCGTCAAGTCCT
TACTTCTGTGCCGCCGTGTTGTCTGGCCGGGTTCCATGGCTCTGGAAATT
TCGATGAGCGTTGCGATTGTTAAAACGGCGTGGAAGTGTAAACCTGAGTT
TTTCGTCGGTTGCATGTACACGATTGTATTTTGTTCATGACGAGCATCGG
TCGCTTTAATTTCGTTCTTTTGAGTAAATTAACTACGCGCTAAACAAATA
GCATAATTAGCTGTCGTTTGCAGGACATATCTGTGTATCCGTTGTTTTTC
TTTACTAGGTACGTGCTGTTTGATTTTGGCGAACAGCAGGTACCTCATCG
AAGTCTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17983:670..1528+

>mRNA_L-elsbetiae_contig17983.5145.1 ID=mRNA_L-elsbetiae_contig17983.5145.1|Name=mRNA_L-elsbetiae_contig17983.5145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig17983:670..1528+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGGCGTTTGTTTGTTTCTGTTCCATGGTAGTTTCGGGGTAGTATG
GGTTATTTGGTGGTACGTCATTTGGATGCGGCACGACGGGATGAGCGTGC
TGAGTGTGTTGCGCGTGGCGTGTACGGTTTGTCGATGTGTGTGCCTTTAT
GTGTGTGTGTGTGTGTGCCTACGACGACGGCCAACATCCCATGCGGGGCG
TTTGTTTGTTTCTGTTCCATGGTAGTTTCGGGGTAGTATGGGTTATTTGG
TGGTACGTCATTTGGATGCGGCACGACGGGATGAGCGTGCTGAGTGTGTT
GCGCGTGGCGTGTACGGTTTGTCGATGTGTGTGCCTTTATGTGTGTGTGT
GTGTGTGCCTACGACGACGGCCAACATCCCTGTGTGTTTGTGCGCGCGCT
CGGTACGTGCTCAGATTTGTGCCGCGTCGGCGCCATGTGCTTGTTGGTTC
TTATTTTCATGTCCGTCGTCTCGTCAAGTCCTTACTTCTGTGCCGCCGTG
TTGTCTGGCCGGGTTCCATGGCTCTGGAAATTTCGATGAGCGTTGCGATT
GTTAAAACGGCGTGGAAGTGTAAACCTGAGTTTTTCGTCGGTTGCATGTA
CACGATTGTATTTTGTTCATGATGTGTGTTTGTGCGCGCGCTCGGTACGT
GCTCAGATTTGTGCCGCGTCGGCGCCATGTGCTTGTTGGTTCTTATTTTC
ATGTCCGTCGTCTCGTCAAGTCCTTACTTCTGTGCCGCCGTGTTGTCTGG
CCGGGTTCCATGGCTCTGGAAATTTCGATGAGCGTTGCGATTGTTAAAAC
GGCGTGGAAGTGTAAACCTGAGTTTTTCGTCGGTTGCATGTACACGATTG
TATTTTGTTCATGA
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