mRNA_L-elsbetiae_contig1798.5141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1798.5141.1
Unique NamemRNA_L-elsbetiae_contig1798.5141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5K8J9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.570e-45
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = -1 
Query:    6 VITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIE 308
            V    LQEL RRRRIPL+MCF+DLQKAYDSVDR+LLWKVLARAG+P E+I+VIR+FH GMQARVR+DDGELSDWF VTQGLRQGC MSP LF++F AA +E
Sbjct:   18 VXVCQLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPAELIAVIRKFHVGMQARVRMDDGELSDWFLVTQGLRQGCSMSPLLFNVFVAAPLE 118
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.060e-44
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RR++IPL+MCFVDL KAYDSVDR++LWKVLARAG+P ++I VIRQFHDGM+A VR+DDGELSDWF VTQG+RQGCV+SP LF+IFFA A+EV
Sbjct:    4 VVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRATVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEV 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5JFS8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.150e-44
Identity = 78/101 (77.23%), Postives = 90/101 (89.11%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RRRRIPL+MCF+DLQKAYDSVDR+LLWKVLARAG+P EMI+VIR+FH GM+ARVR DDGELSDWF VTQGLRQGC MSP LF++FFAA +E+
Sbjct:  171 VVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI 271
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5JBH7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.180e-44
Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RRRRIP +MCF+DLQKAYDSVDR+LLWKVLARAG+  E+I+VIR+FH GM+ARVR+DDGELSDWF VTQGLRQGC MSP LF+ FFAA +EV
Sbjct:    4 VVRRLQELGRRRRIPFYMCFIDLQKAYDSVDRELLWKVLARAGIAAEIIAVIRKFHVGMRARVRMDDGELSDWFPVTQGLRQGCSMSPLLFNAFFAAPLEV 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5JE46_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE46_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 5.280e-44
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = -1 
Query:   18 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFA 305
            +   LQEL RRRRIPL+MCF+DLQKAYDSVDR+LLWKVLARAG+P EMI+VIR+FH GM+ARVR DDGELSDWF VTQGLRQGC MSP LF++FFA
Sbjct:  101 VVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 196
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.210e-43
Identity = 73/101 (72.28%), Postives = 88/101 (87.13%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RR++IPL+M FVDL KAYDSVDR++LWKVLARAG+  ++I VIRQFHDGM+ARVR+DDGELSDWF VTQG+RQGCV+SP LF+IFFA  +EV
Sbjct:    4 VVRRLQELGRRKKIPLYMYFVDLNKAYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.930e-43
Identity = 73/101 (72.28%), Postives = 87/101 (86.14%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RR+ IPL+MCFVDL KAYD VDR++LW VLARAG+P ++I VIRQFHDGM+ARVR+DDGELSDWF VTQG+RQGCV+SP LF+IFFA  +EV
Sbjct:    4 VVRRLQELERRKNIPLYMCFVDLNKAYDWVDREMLWNVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5J8S3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 3.990e-43
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RR++IPL+MCFVDL KAYDSVDR++LWKVLARAG+P ++I VIRQFHDGM+ARVR+DDGELSDWF VTQG+RQGCV+SP LF+IFFA  +EV
Sbjct:  210 VVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV 310
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 6.970e-43
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = -1 
Query:    6 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIE 305
            +   LQEL RR++IPL+MCFVDL KAYDSVDR++LWKVLARAG+P ++I VIRQFHDGM+ARVR+DDGELSDWF VTQG+RQGCV+SP LF+IFFA  +E
Sbjct:   99 VVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLE 198
[Close]
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 9.110e-43
Identity = 78/101 (77.23%), Postives = 90/101 (89.11%), Query Frame = -1 
Query:    3 ITASLQELARRRRIPLFMCFVDLQKAYDSVDRDLLWKVLARAGVPEEMISVIRQFHDGMQARVRLDDGELSDWFEVTQGLRQGCVMSPTLFSIFFAAAIEV 305
            +   LQEL RRRRIPL+MCF+DLQKAYDSVDR+LLWKVLARAG+P EMI+VIR+FH GM+ARVR DDGELSDWF VTQGLRQGC +SP LF++FFAA +EV
Sbjct:  118 VVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEV 218
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1798.5141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8J9_9PHAE1.570e-4577.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE1.060e-4474.26Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFS8_9PHAE1.150e-4477.23Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JBH7_9PHAE2.180e-4475.25Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JE46_9PHAE5.280e-4479.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBR5_9PHAE3.210e-4372.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X6_9PHAE3.930e-4372.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J8S3_9PHAE3.990e-4374.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVE1_9PHAE6.970e-4374.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7X5_9PHAE9.110e-4377.23Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1798contigL-elsbetiae_contig1798:148..5441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1666
Cds size1143
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.7169874-UTR-L-elsbetiae_contig1798:147..6441622815748.7169874-UTR-L-elsbetiae_contig1798:147..644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 148..644 +
1691683077.442567-UTR-L-elsbetiae_contig1798:147..6441691683077.442567-UTR-L-elsbetiae_contig1798:147..644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 148..644 +
1622815748.7288773-UTR-L-elsbetiae_contig1798:1387..14111622815748.7288773-UTR-L-elsbetiae_contig1798:1387..1411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 1388..1411 +
1691683077.4552383-UTR-L-elsbetiae_contig1798:1387..14111691683077.4552383-UTR-L-elsbetiae_contig1798:1387..1411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 1388..1411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.73939-CDS-L-elsbetiae_contig1798:1411..18461622815748.73939-CDS-L-elsbetiae_contig1798:1411..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 1412..1846 +
1691683077.4683795-CDS-L-elsbetiae_contig1798:1411..18461691683077.4683795-CDS-L-elsbetiae_contig1798:1411..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 1412..1846 +
1622815748.7492232-CDS-L-elsbetiae_contig1798:2665..27371622815748.7492232-CDS-L-elsbetiae_contig1798:2665..2737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 2666..2737 +
1691683077.4806037-CDS-L-elsbetiae_contig1798:2665..27371691683077.4806037-CDS-L-elsbetiae_contig1798:2665..2737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 2666..2737 +
1622815748.759848-CDS-L-elsbetiae_contig1798:3102..33751622815748.759848-CDS-L-elsbetiae_contig1798:3102..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 3103..3375 +
1691683077.4915633-CDS-L-elsbetiae_contig1798:3102..33751691683077.4915633-CDS-L-elsbetiae_contig1798:3102..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 3103..3375 +
1622815748.771099-CDS-L-elsbetiae_contig1798:3841..39371622815748.771099-CDS-L-elsbetiae_contig1798:3841..3937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 3842..3937 +
1691683077.5049052-CDS-L-elsbetiae_contig1798:3841..39371691683077.5049052-CDS-L-elsbetiae_contig1798:3841..3937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 3842..3937 +
1622815748.7829611-CDS-L-elsbetiae_contig1798:4130..42561622815748.7829611-CDS-L-elsbetiae_contig1798:4130..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 4131..4256 +
1691683077.5141356-CDS-L-elsbetiae_contig1798:4130..42561691683077.5141356-CDS-L-elsbetiae_contig1798:4130..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 4131..4256 +
1622815748.7942655-CDS-L-elsbetiae_contig1798:4868..49611622815748.7942655-CDS-L-elsbetiae_contig1798:4868..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 4869..4961 +
1691683077.5228539-CDS-L-elsbetiae_contig1798:4868..49611691683077.5228539-CDS-L-elsbetiae_contig1798:4868..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 4869..4961 +
1622815748.805299-CDS-L-elsbetiae_contig1798:5393..54411622815748.805299-CDS-L-elsbetiae_contig1798:5393..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 5394..5441 +
1691683077.5314388-CDS-L-elsbetiae_contig1798:5393..54411691683077.5314388-CDS-L-elsbetiae_contig1798:5393..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 5394..5441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1798.5141.1prot_L-elsbetiae_contig1798.5141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1798 1412..5441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1798.5141.1

>prot_L-elsbetiae_contig1798.5141.1 ID=prot_L-elsbetiae_contig1798.5141.1|Name=mRNA_L-elsbetiae_contig1798.5141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp
MKTIMKKRRDGRDLPTLRFLHEEALHKGFLHGELEKATRILEWQTSRAEV
VLSDQADQLAARASGGCRRRTSSSCPRDSFPLVGFSLVGGCEVAACVPLL
MGADDPPMVEKKKALEEAVPALLDASSDLKHFNKLARAMAKDRKKVRART
KRAKARAKAGDDLASAEQKRMVRLDPLRTTDKKKPMTLDEIRKDIEEERR
RWVAEKVEHDEVWKYVEEELRKDVEEELRRWVAAKVEYAEALKDWEEAQR
HWEEIQRRSRAEENKATFHASSLWLLAIIVTTFLAVTVFSPQDNEAPFDA
ISLRVEMFAGMSMYYIACVLQAACLLQAVAYSLQAEETNAIFDPTSLRFG
VLAVTVMAVVTYLLQRTLIMVRKLELMVRRR
back to top

mRNA from alignment at L-elsbetiae_contig1798:148..5441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1798.5141.1 ID=mRNA_L-elsbetiae_contig1798.5141.1|Name=mRNA_L-elsbetiae_contig1798.5141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5294bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:148..5441+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACCTCGATAGCCGCAGCGAAGAAGATGCTGAACAGCGTCGGGGACAT
CACACACCCTTGCCGCAATCCCTGCGTGACCTCGAACCAGTCCGATAGTT
CCCCGTCATCCAAGCGTACCCGGGCTTGCATTCCGTCGTGGAACTGACGG
ATTACGGAGATCATCTCCTCGGGGACCCCGGCCCTCGCAAGTACCTTCCA
CAGCAGATCTCGGTCGACCGAGTCGTAGGCTTTCTGGAGGTCGACGAAGC
ACATAAACAGCGGTATCCTTCTTCTCCGTGCCAACTCCTGGAGACTGGCA
GTAATAACGTAATGACCCAACCACCCTTAATGCCACCCCCCCCTGCTGCT
GCTGCTTTGTTCTTTCGCCCATAGGGGGACACCGAAGCTGCTGTGAGGGT
CGCGGCCGTTCAGCAGCGCGCAGCTCAGCTGTTTGTAGAGAAGCCCGGGA
CATCGCTCGAAAAAGACTTGCAGTTTCAGGCAGTTGCTTTCGAACAGGTA
TGATATTTGAGCCAAGAGAGAGAGAGAGAGAGAGAGAAACCAAATAACCA
GAGAGGAGGCACTTGCTTGGCTTCGACCTGCTGCACAAGAACAAGCGTAT
AGTCAGGCACGGACTGCATCCTCGGGGTGAAGGATGAAGCGCTTAGTAGC
AGCTCTCTGAATTCGCATGCAAGTGTAAGTTTTGGAAGACAAGCAAAGGC
TAGGACCAAGCGTCTGCAAGTGTCGACGACTTAACGGTGGTAGAAAACTC
TTTAAAAACACTGCTGTTAATTAAACAGTGCCTATTTAGGCAAGCACCGA
ATGCGTATTACCGGAATAGTCTTCGGAACATTGTAGAAGTGATCGCATAA
TTGTACACACCTACGGGTCATACATTGAACCATAAGAGTAACGATCCATA
GGACTTTTGTCCCCGAGACAGGGCGGATCCAGCGTGCGTCACCCGCACTC
GGTAGGTTGCAATAGCCCGTGTGTGAGGGTCTTTTCGTGATAGGCTGGAG
GCTCGCCCCTATGGTGCTCACCCCCACCTGCTCACGCCTCTCCTCTTTCC
TTGTCTTTCGGCCAACTATCTCAGCGCCAATTTAAACCATATTACCTGGT
CTACAAACTGGGTTACGTAGTTACTCTGTGAGCCATTGCAAGTTATTAAA
CCCCAACACACGGGACTGTCACACACACACATTCATGTTTTCCACGGACG
TGGTTCGTGTTTCCGATGGCGTTGGGCTCCCTCCTTCTAGGGAGAGAACG
ACAGCAAGTTCCGAATGAAAACAATTATGAAGAAACGCCGAGACGGACGA
GACCTGCCGACCCTTCGCTTTCTTCACGAGGAGGCTCTGCACAAAGGCTT
TCTGCATGGCGAGCTCGAGAAGGCCACCCGCATTCTGGAGTGGCAGACGT
CCAGGGCCGAGGTCGTGCTGAGCGACCAAGCAGACCAACTAGCGGCCCGT
GCGAGTGGGGGTTGCCGCCGCCGAACGTCTAGCAGCTGCCCTCGGGATTC
GTTTCCGCTCGTCGGCTTCTCGCTCGTCGGCGGCTGCGAGGTCGCTGCCT
GCGTGCCCTTGCTGATGGGAGCAGACGACCCGCCGATGGTGGAAAAGAAG
AAAGCTCTTGAGGAGGCTGTTCCTGCCTTGTTGGACGCGTCGTCTGATCT
GAAGCATTTCAACAAACTCGCCAGGGCCATGGCGAAAGACAGGAAAAAGG
TAAGCACCAACCGATGACAAAATGGTCTCTGGTCTAGGTCAGCGATGACA
TTTCAACCTGCTTGTAAGCGGCTTCGGTTCGCAGTAAGTAGATGTAGTTT
TGAAAGCTCCCTGGCTTTGGCCCTGCAAGCTTGGGCATTGAAGTCGTCCT
GTGGACTCGAAAAATTGGGTTGGGTTGGTGGAGAGGAAGCACGGCCAACG
ATGTGCGATAGAACCAATCGCGCCTGGCGTTGTTTGAGATACCTCCTCTC
GGCCATAGTTGTCACGTAGCCTTGCGTGGTCCGGTTCCCCCTCCGGCGAA
TAATGCAATGCCATAGATTCATCCGTATTCGAGCATGTACGGACAAATCA
CCTTGCCCCGACGGTCCAGCCCTTTTCCACGTTTCGGTGCTGTTATTGTT
GCTGTTGTTGATGATATTGGTGGTGTTTGCTTTGTTGGTGTCATGTTGTG
GTTGGTAAATATTGCTAGTAGTGGTTGTGGTGGTGTTGCAAAGTCGTTTT
CGGAAGAATAGGCCGAGATATCGGCCTGCTCAACCCATGGAAGAGACCAC
GAAACTTGCGTTGTTGCTATCTAGCTCCGAGAGCATCCCAAGGCATGCAT
GTGCGGGGTATTTCGCCCCGCTTTTTTGGGGGTGTACTGTAGCGGTACAT
AAACACGGAAATGTTCGTCGATATTATCAACGTACTTCTGCATGCACGAC
ATCAGCACGTCAACACATGTATGTGTCGGGCCTTGTGAATTTGCTTCGAT
GCGCTCTGAGTATCCTGCCCCCACCTCTAGACCACCTGCACCCCGAATCC
ATCACGCGCAACGTCAAGGTCCGTGCCCGGACGAAGAGGGCCAAGGCGAG
GGCCAAGGCGGGGGATGACCTTGCGTCGGCTGAGCAGAAGGTACATACTG
TAGAGTTGTTATTTTGTTATTTTGGGTGGAAGATCAGTCCGCAAAAATTG
TTTTCATTCTAATATGTAGCATATCACGTTAAACGTATGTTGCACAGAGT
GCAGAGAAGTAAGCTACATGTACACATAGATATTTACAACCGCACTTGAT
AGGTTACCCTAGATGGCGCTCCAGGCGTTCAGCACGTGCGCGGAAATCGC
AAGGGTTGTGTGGAGGATGATGCCAAGCACGCGAGCACCGTTGTCCGAGT
TTGCCCGCGTAGAAAGCCTTCACAGAAGAGTAAAAGTGTACACCTGCGCC
CCCCCTCCTACCCTGACGTCCTCCGCGCACGCTTCTACTGTGTGGATGAC
GTCAGAGAATGGTGAGGCTCGACCCCTTGCGAACTACAGACAAGAAGAAG
CCAATGACGTTGGACGAGATCCGGAAAGATATTGAGGAGGAACGGCGACG
CTGGGTGGCGGAAAAGGTAGAGCATGACGAGGTCTGGAAATATGTCGAGG
AGGAACTACGGAAAGATGTCGAGGAGGAACTACGACGCTGGGTGGCGGCC
AAGGTAGAGTATGCCGAGGCCTTGAAAGATTGGGAGGAGGCACAGCGACA
TTGGGAGGAGATACAGCGACGATCTCGGGTAAGGAGACAGATACGTACCG
TAGAATCCCTTCAAATGTTTTCTTTCTGTGTGTTGATTTCTTTGCAGAGT
GCATGCACAACACCCTTCGATGGCGTTTTTACTTGACGCCTGGCGTAGTT
GGCGTGCAGTCTTTAGAAGAGCAGAGAGGTAAAGATGCGCATGTGGCACT
TCTTGTCTAGACATTTTGCGAGGAAAAGACAATACACAGTTCTTGTTGGG
CCGTATGGAGTTAAGCCGCTTTATCCTTTCATCGTCGAGTGTCTCGCACG
GCGGTGGGTGCTCTTGACGCACAGACAGTTGTTTTTTTCCAAGTCAGCAG
TTGAGTACGGAGCACGGTAGAGACCATCACGTGATGGGCTTACTACAACA
AAATTCCACCCCTAAACAATCTGCACGAAAGAGTTTGCAACCATCCGCAA
CACAACAACCTGGCCTAAATATGGGCGTGCGTGTCGAATTGCAGGCGGAG
GAGAACAAGGCCACTTTCCATGCGAGTTCGCTGTGGTTGTTGGCGATCAT
TGTAACGACGTTCCTGGCCGTTACTGTCTTCTCTCCGCAGGTAAAAGCCA
CGTACCGTACCGTTTTATTGACAGTTGAACCCGGGAGGCTGGACACTTAC
AAAATGTGTGTGAAGGAAGCTTTTATTTTTTGTTGCGTTTTCTACCCTTG
TTTTAAATGTTCTGCACGAAAGAGGTTGCAACCATTCGCAACACAACAAC
CTTGCCTCAATATGGGCGCGTGTCAAATTGCAGGATAACGAGGCCCCTTT
CGATGCGATATCGCTGAGAGTTGAGATGTTCGCTGGAATGAGCATGTACT
ACATTGCCTGCGTCCTGCAGGCAGCCTGCCTTCTGCAGGCGGTAGCCTAC
TCTCTGCAGGTAAAGCCACGTACCGTACCGTTTTATTGGCATTTGAACCC
GGGAGGCTGGAGAACTCACTCGTACAAAGTGTGTGTGAAGGAAACTTTTA
TTTTTTGTCGCGTTTTCTACCCTTGTTTCGGATTTTCCAACAAGCGGTAT
TTGCATCTTGTGAAAGAGTCCGCCCACGAATCGAACCCCTCAAAAATTTG
TTTATGTGTTGATTTCTTTGCAGAGTGCACAACACCCCGATATCGGCTTT
TTGCTTGACGCCTGACGTAGCTGGCGTGCAGTCTTTAGAAGAGCAGAGAG
GTTAAAGATGCGCTTGTGGCACGTCCTGTTTATTTTGCGAGGAAAATACT
ACAAGACAACAAGCAGTTCTTGTGCCGTGTGGAGTGTAGCCACTTTATCC
TTTGTAGTCGAGTGTCTCGCACGGCGGTGGGTGCTCGTGGCGCACAGAGA
GTTGCTTTTTTTCCAAGTCAGCAGTTTACTACGGAGCACGGACGGTAGAG
ACCATCACATGATGCCTTCCTACAACCAAACTCCACCACTAAAATTTCGG
CACAAAAGAGGTTGCAACCATCCGCAACACAGCAGCCTGGCCTGAATATG
GGCGTGCGTGTCGAATTGCAGGCGGAGGAGACCAACGCCATTTTCGATCC
GACATCGCTGAGGTTTGGGGTGCTCGCTGTAACGGTCATGGCCGTTGTTA
CCTACCTTCTGCAGGTAAAAGCCACGTACCGTACCGTTTACCGTACCGTT
TTAATGACATTTGAACCCGGGAGGCTGAACACTCACTCTTTCTTCAACAT
GTGTGTGAAGGAAGCTTTTATTTTTTGTTGCGTTTTTTACCCTTGTTTCG
AATTTTCCAACAAGCTGTAGTTGCACCTTGTGAAAGATTCCACCCGCACA
CCTCGAAAGGACGGAGAGGGAAAGAAGGGGGAGAGCATTATCGTCTCGAG
ACAACATGGGGAAGATCAGCCAAAGCACGTCATAGTCGTTCAATTCGTGA
CAATATCAACATCATCTATTTTTCAGAGAAATCTTGAACATGTATCTACA
CGAGGAAAATCACCCACCCGGCACTGAACTATGGGGGGTAAACAATGATA
TGTACAACCTTCCCGTGCTTGCTTGATTCGTATCGTTGGTGCATAGCGTA
CTCTCATCATGGTACGAAAACTGGAGCTGATGGTACGAAGACGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1798:148..5441+

>mRNA_L-elsbetiae_contig1798.5141.1 ID=mRNA_L-elsbetiae_contig1798.5141.1|Name=mRNA_L-elsbetiae_contig1798.5141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:148..5441+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAACAATTATGAAGAAACGCCGAGACGGACGAGACCTGCCGACCCT
TCGCTTTCTTCACGAGGAGGCTCTGCACAAAGGCTTTCTGCATGGCGAGC
TCGAGAAGGCCACCCGCATTCTGGAGTGGCAGACGTCCAGGGCCGAGGTC
GTGCTGAGCGACCAAGCAGACCAACTAGCGGCCCGTGCGAGTGGGGGTTG
CCGCCGCCGAACGTCTAGCAGCTGCCCTCGGGATTCGTTTCCGCTCGTCG
GCTTCTCGCTCGTCGGCGGCTGCGAGGTCGCTGCCTGCGTGCCCTTGCTG
ATGGGAGCAGACGACCCGCCGATGGTGGAAAAGAAGAAAGCTCTTGAGGA
GGCTGTTCCTGCCTTGTTGGACGCGTCGTCTGATCTGAAGCATTTCAACA
AACTCGCCAGGGCCATGGCGAAAGACAGGAAAAAGATGAAAACAATTATG
AAGAAACGCCGAGACGGACGAGACCTGCCGACCCTTCGCTTTCTTCACGA
GGAGGCTCTGCACAAAGGCTTTCTGCATGGCGAGCTCGAGAAGGCCACCC
GCATTCTGGAGTGGCAGACGTCCAGGGCCGAGGTCGTGCTGAGCGACCAA
GCAGACCAACTAGCGGCCCGTGCGAGTGGGGGTTGCCGCCGCCGAACGTC
TAGCAGCTGCCCTCGGGATTCGTTTCCGCTCGTCGGCTTCTCGCTCGTCG
GCGGCTGCGAGGTCGCTGCCTGCGTGCCCTTGCTGATGGGAGCAGACGAC
CCGCCGATGGTGGAAAAGAAGAAAGCTCTTGAGGAGGCTGTTCCTGCCTT
GTTGGACGCGTCGTCTGATCTGAAGCATTTCAACAAACTCGCCAGGGCCA
TGGCGAAAGACAGGAAAAAGGTCCGTGCCCGGACGAAGAGGGCCAAGGCG
AGGGCCAAGGCGGGGGATGACCTTGCGTCGGCTGAGCAGAAGGTCCGTGC
CCGGACGAAGAGGGCCAAGGCGAGGGCCAAGGCGGGGGATGACCTTGCGT
CGGCTGAGCAGAAGAGAATGGTGAGGCTCGACCCCTTGCGAACTACAGAC
AAGAAGAAGCCAATGACGTTGGACGAGATCCGGAAAGATATTGAGGAGGA
ACGGCGACGCTGGGTGGCGGAAAAGGTAGAGCATGACGAGGTCTGGAAAT
ATGTCGAGGAGGAACTACGGAAAGATGTCGAGGAGGAACTACGACGCTGG
GTGGCGGCCAAGGTAGAGTATGCCGAGGCCTTGAAAGATTGGGAGGAGGC
ACAGCGACATTGGGAGGAGATACAGCGACGATCTCGGAGAATGGTGAGGC
TCGACCCCTTGCGAACTACAGACAAGAAGAAGCCAATGACGTTGGACGAG
ATCCGGAAAGATATTGAGGAGGAACGGCGACGCTGGGTGGCGGAAAAGGT
AGAGCATGACGAGGTCTGGAAATATGTCGAGGAGGAACTACGGAAAGATG
TCGAGGAGGAACTACGACGCTGGGTGGCGGCCAAGGTAGAGTATGCCGAG
GCCTTGAAAGATTGGGAGGAGGCACAGCGACATTGGGAGGAGATACAGCG
ACGATCTCGGGCGGAGGAGAACAAGGCCACTTTCCATGCGAGTTCGCTGT
GGTTGTTGGCGATCATTGTAACGACGTTCCTGGCCGTTACTGTCTTCTCT
CCGCAGGCGGAGGAGAACAAGGCCACTTTCCATGCGAGTTCGCTGTGGTT
GTTGGCGATCATTGTAACGACGTTCCTGGCCGTTACTGTCTTCTCTCCGC
AGGATAACGAGGCCCCTTTCGATGCGATATCGCTGAGAGTTGAGATGTTC
GCTGGAATGAGCATGTACTACATTGCCTGCGTCCTGCAGGCAGCCTGCCT
TCTGCAGGCGGTAGCCTACTCTCTGCAGGATAACGAGGCCCCTTTCGATG
CGATATCGCTGAGAGTTGAGATGTTCGCTGGAATGAGCATGTACTACATT
GCCTGCGTCCTGCAGGCAGCCTGCCTTCTGCAGGCGGTAGCCTACTCTCT
GCAGGCGGAGGAGACCAACGCCATTTTCGATCCGACATCGCTGAGGTTTG
GGGTGCTCGCTGTAACGGTCATGGCCGTTGTTACCTACCTTCTGCAGGCG
GAGGAGACCAACGCCATTTTCGATCCGACATCGCTGAGGTTTGGGGTGCT
CGCTGTAACGGTCATGGCCGTTGTTACCTACCTTCTGCAGCGTACTCTCA
TCATGGTACGAAAACTGGAGCTGATGGTACGAAGACGGCGTACTCTCATC
ATGGTACGAAAACTGGAGCTGATGGTACGAAGACGG
back to top