mRNA_L-elsbetiae_contig17920.5122.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17920.5122.1
Unique NamemRNA_L-elsbetiae_contig17920.5122.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17920.5122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17920contigL-elsbetiae_contig17920:1757..2683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.1609848-CDS-L-elsbetiae_contig17920:1756..18111622815747.1609848-CDS-L-elsbetiae_contig17920:1756..1811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 1757..1811 -
1691683076.3948367-CDS-L-elsbetiae_contig17920:1756..18111691683076.3948367-CDS-L-elsbetiae_contig17920:1756..1811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 1757..1811 -
1622815747.175031-CDS-L-elsbetiae_contig17920:2393..26831622815747.175031-CDS-L-elsbetiae_contig17920:2393..2683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 2394..2683 -
1691683076.4088743-CDS-L-elsbetiae_contig17920:2393..26831691683076.4088743-CDS-L-elsbetiae_contig17920:2393..2683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 2394..2683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17920.5122.1prot_L-elsbetiae_contig17920.5122.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17920 1757..2683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17920.5122.1

>prot_L-elsbetiae_contig17920.5122.1 ID=prot_L-elsbetiae_contig17920.5122.1|Name=mRNA_L-elsbetiae_contig17920.5122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MALVPAAGVRSGGTTYDPPAASPARSLKTGAACLAGANPARRGLDPGGGS
SIGSTRRRGGERRRSSGLGSSAPPPPGSPPPLLARRASQRDTEPTRRKAT
TTHGADGDVTHRQND
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mRNA from alignment at L-elsbetiae_contig17920:1757..2683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17920.5122.1 ID=mRNA_L-elsbetiae_contig17920.5122.1|Name=mRNA_L-elsbetiae_contig17920.5122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=927bp|location=Sequence derived from alignment at L-elsbetiae_contig17920:1757..2683- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTGGTACCTGCCGCAGGGGTTAGATCGGGTGGTACCACATATGA
TCCACCAGCAGCATCCCCTGCACGGAGCCTCAAAACCGGCGCAGCGTGTT
TGGCCGGGGCTAATCCTGCAAGACGTGGCTTAGACCCGGGCGGCGGCAGC
TCTATCGGGTCTACTCGACGGCGGGGCGGGGAGAGGCGACGATCCTCTGG
TTTAGGCAGTAGCGCACCACCCCCTCCAGGCAGCCCCCCACCACTCTTGG
CCCGAAGAGCGTCGCAACGAGATACGGAGCCAACCAGGAGGTACCGTGAA
CGCATGATAACAAGTGTTTACAGTAGACTATGCGTGTATTGATGTGGTGG
CTGAACGCCGAAAGAGATGTACTGCTTATCGTCGTCCTGTTCTCCGAATT
CTGCGTCCAACGGTGGTCCAAATAGTACAACACAGATCTAAGGTAGTACA
ACCTTCTTTGGTGTCTCGTAAGAAGGAATGGGCTTGAGAGTTGCTTCTAC
TGGAGGAGCTGGCGCAGCGCTGTAGATAGAGAAAAGGTACCGACAAAATT
CCGCGCTGTCGTGAAATGAGCACCGTTTTTGCAGGTAAATCCTTAGCAAA
AACTTCGTTATATGAAAATGGGCCGACTATGGTTGTTCTTTGGGTCTAGG
TATGATGGATAGAATGAAATTGCATACCTTCGAGTGTCGGAACTAAATCC
GGCACTGCCGTTTCATACCAGATATGTTTGTACCAAGGTTGTATACTTCG
CACCGGCCGTGTCGACATGCCTTTCATACGCAGAGCCCCACCGAGTATAC
ATGAACCTTGCTTGTTCGCTTCATGCACCCCATGCAGTTGTTTTTAGTAA
TTTTTTGCTGTGCGCTTAGCAGGAAGGCAACTACCACGCACGGCGCGGAC
GGTGATGTGACGCACAGACAGAACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17920:1757..2683-

>mRNA_L-elsbetiae_contig17920.5122.1 ID=mRNA_L-elsbetiae_contig17920.5122.1|Name=mRNA_L-elsbetiae_contig17920.5122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig17920:1757..2683- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTGGTACCTGCCGCAGGGGTTAGATCGGGTGGTACCACATATGA
TCCACCAGCAGCATCCCCTGCACGGAGCCTCAAAACCGGCGCAGCGTGTT
TGGCCGGGGCTAATCCTGCAAGACGTGGCTTAGACCCGGGCGGCGGCAGC
TCTATCGGGTCTACTCGACGGCGGGGCGGGGAGAGGCGACGATCCTCTGG
TTTAGGCAGTAGCGCACCACCCCCTCCAGGCAGCCCCCCACCACTCTTGG
CCCGAAGAGCGTCGCAACGAGATACGGAGCCAACCAGGAGATGGCGTTGG
TACCTGCCGCAGGGGTTAGATCGGGTGGTACCACATATGATCCACCAGCA
GCATCCCCTGCACGGAGCCTCAAAACCGGCGCAGCGTGTTTGGCCGGGGC
TAATCCTGCAAGACGTGGCTTAGACCCGGGCGGCGGCAGCTCTATCGGGT
CTACTCGACGGCGGGGCGGGGAGAGGCGACGATCCTCTGGTTTAGGCAGT
AGCGCACCACCCCCTCCAGGCAGCCCCCCACCACTCTTGGCCCGAAGAGC
GTCGCAACGAGATACGGAGCCAACCAGGAGGAAGGCAACTACCACGCACG
GCGCGGACGGTGATGTGACGCACAGACAGAACGACGAAGGCAACTACCAC
GCACGGCGCGGACGGTGATGTGACGCACAGACAGAACGAC
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