mRNA_L-elsbetiae_contig179.5108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig179.5108.1 vs. uniprot
Match: A0A6H5KL28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL28_9PHAE) HSP 1 Score: 368 bits (945), Expect = 1.410e-114 Identity = 287/513 (55.95%), Postives = 323/513 (62.96%), Query Frame = 3 Query: 249 SRAHPSLARVAPAFAARASSSL-NKRSGYER-----RSSLVAVRAARTGGGGRHR--RGLSS-VTMSAAGWGRGRREQPW----MVGSGAEAGXXXXXXXXXRPMVVGHRRRYLTVSATPQTGGGVRRFEAAELLQMSYRDLQALAKDNNVRANQTGKAIVNDLVALWGGAAPDGGGRNGDEEDADVAEATVGEAGSDWVAGVLDEDIMAGVDLSKYDDDGDXXXXXEDYDQAVKRATSGKFSVTEMEGLKGGVDQGDGWVTFKLGKGDALRLDGGXXXXXXXXXXXXXXXXXXXXXXGGSDAMDARIRDAESSRLRLSPEMMASSAEDFGFGRDTADLQKLTITVPKGCCPGCGSKFQSEDAADPGYLQLDKLDRLLGNEGGPAAVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEADMDPEAWLEAXXXXXXXXXXXXXXXXEEGGSNESGGGDREEESGSREWVEGALSSPAASLAGRVGGLGRASRDSKALEGRELTPSSSSAAA 1748 SRA A V PAFAAR SSSL +KR+ ER RSSLVAV RT GR RG+S+ V+MSA W + QPW + G+ + AG P VG RRR L +SA GG RRF++AELL+M YRDLQ LAK+N+VRANQ G+AIVNDL+AL GA P + D DVA + E+ SDWVAGVLDEDIMAGVDL +D E Y QAVKRATSGKF+ T+MEGLKGGVD+GDGWVTFKLGKGD+L LDG XXXXXXXXXXXXXX D MDARIRDAE+SR RLSPEMMASSAEDFGFGRD ADL+KLTITVP GCCPGCGSKFQS+D A PG+LQLDKLD LLGNEG A VT A EADMDPEAWLEA XXXXX E+ E GGD E V+ + SPA G GGLGRASRD+ L GR TPS+++AAA Sbjct: 112 SRASSLAAGVLPAFAARVSSSLASKRNHGEREVGSGRSSLVAV-GRRTSSRGRRTNDRGVSTAVSMSAEVW----KIQPWGLGLLGGAFSRAGGW--------PPAVGDRRRTLAISAATTEGG--RRFDSAELLKMGYRDLQKLAKENDVRANQAGEAIVNDLLAL--GANP---AKGPDSNGEDVAVPAMRES-SDWVAGVLDEDIMAGVDLEADGEDDADGEDSETYAQAVKRATSGKFTATDMEGLKGGVDRGDGWVTFKLGKGDSLGLDG-----EGDDXXXXXXXXXXXXXXXXXDDMDARIRDAEASRFRLSPEMMASSAEDFGFGRDAADLEKLTITVPTGCCPGCGSKFQSDDPASPGFLQLDKLDDLLGNEGVAATVTTAEDTREAAAVATD------------------EADMDPEAWLEAQSDINTDLXXXXXLADED---XEDDGGDPR-----GELVDRSYGSPA----GGGGGLGRASRDTAVLAGR--TPSTAAAAA 566
BLAST of mRNA_L-elsbetiae_contig179.5108.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI) HSP 1 Score: 330 bits (847), Expect = 1.650e-100 Identity = 218/369 (59.08%), Postives = 236/369 (63.96%), Query Frame = 3 Query: 618 MSYRDLQALAKDNNVRANQTGKAIVNDLVALWGGAAPDGGGRNGDEEDADVAEATVGEAGSDWVAGVLDEDIMAGVDLSKYDDDGDXXXXXEDYDQAVKRATSGKFSVTEMEGLKGGVDQGDGWVTFKLGKGDALRLDGGXXXXXXXXXXXXXXXXXXXXXXGGSDAMDARIRDAESSRLRLSPEMMASSAEDFGFGRDTADLQKLTITVPKGCCPGCGSKFQSEDAADPGYLQLDKLDRLLGNEGGPAAVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEADMDPEAWLEAXXXXXXXXXXXXXXXXEEGGSNESGGGDREEESGSREWVEGALSSPAASLAGRVGGLGRASRDSKALEGRELT 1724 M YRDLQ LAK+N++RANQ G+AI+NDLVAL GA P R D DVA GE+ SDWVAGVLDEDIMAGVDL +D E Y QAVKRATSGKF+ T+MEGLKGGVD+GDGWVTFKLGKGDAL LDG XXXXXXXXXXXXXX D MDARIRDAE+SR RLSPEM+ASSAEDFGFGRD ADL+KLTITVP GCCPGCGSKFQSED A PG+LQLDKLD LLGNE G A V A EADMDPEAWLEA G + GGD EWVEG+ +SPA G GGLGRASRD+ L GR T Sbjct: 1 MGYRDLQKLAKENDIRANQAGEAIINDLVAL--GANP---ARGPDSNGEDVAVPATGES-SDWVAGVLDEDIMAGVDLEADGEDDADGEDSETYAQAVKRATSGKFTATDMEGLKGGVDRGDGWVTFKLGKGDALGLDG-----EGDDXXXXXXXXXXXXXXXXXDDMDARIRDAEASRFRLSPEMIASSAEDFGFGRDAADLEKLTITVPTGCCPGCGSKFQSEDPASPGFLQLDKLDGLLGNEVGAATVMTAEDTREAAAVTTD------------------EADMDPEAWLEAQSDINTDLDFDLDV-----GDEDDDGGDPR-----GEWVEGSYASPAGVPTGGGGGLGRASRDTAVLAGRTPT 330 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig179.5108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig179.5108.1 >prot_L-elsbetiae_contig179.5108.1 ID=prot_L-elsbetiae_contig179.5108.1|Name=mRNA_L-elsbetiae_contig179.5108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=565bp MRAACRKQQQQSSRQPRNSSSSTATACLVTLLSGGRGSMALSLPAYSSRSback to top mRNA from alignment at L-elsbetiae_contig179:673..16087- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig179.5108.1 ID=mRNA_L-elsbetiae_contig179.5108.1|Name=mRNA_L-elsbetiae_contig179.5108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15415bp|location=Sequence derived from alignment at L-elsbetiae_contig179:673..16087- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig179:673..16087- >mRNA_L-elsbetiae_contig179.5108.1 ID=mRNA_L-elsbetiae_contig179.5108.1|Name=mRNA_L-elsbetiae_contig179.5108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3390bp|location=Sequence derived from alignment at L-elsbetiae_contig179:673..16087- (Laminarionema elsbetiae ELsaHSoW15)back to top |