mRNA_L-elsbetiae_contig1787.5095.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1787.5095.1
Unique NamemRNA_L-elsbetiae_contig1787.5095.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1787.5095.1 vs. uniprot
Match: A0A6H5L111_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L111_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.390e-31
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:   43 MSFRGRPSLSGTPGRSSLEPSPNALDLARLRADLVSARSLPCFQARPECLGMIDDVLTSCLPVAAMAESTAASGAARLVAEVA 291
            MSFRGRPSLSGTPGRSSLEPS ++LDLA+LRADLV+AR L CFQARP+C  MIDDVLTSCLP+AAMAE T+A+ AARL A  A
Sbjct:    1 MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQARPDCQSMIDDVLTSCLPLAAMAEFTSAAPAARLGAAAA 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1787.5095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L111_9PHAE1.390e-3178.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1787contigL-elsbetiae_contig1787:17361..21971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size541
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1787.5095.1prot_L-elsbetiae_contig1787.5095.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1787 17361..21969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3694475-CDS-L-elsbetiae_contig1787:17360..175341622815744.3694475-CDS-L-elsbetiae_contig1787:17360..17534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 17361..17534 +
1691683074.4977305-CDS-L-elsbetiae_contig1787:17360..175341691683074.4977305-CDS-L-elsbetiae_contig1787:17360..17534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 17361..17534 +
1622815744.3821826-CDS-L-elsbetiae_contig1787:20617..207651622815744.3821826-CDS-L-elsbetiae_contig1787:20617..20765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 20618..20765 +
1691683074.5134106-CDS-L-elsbetiae_contig1787:20617..207651691683074.5134106-CDS-L-elsbetiae_contig1787:20617..20765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 20618..20765 +
1622815744.3943071-CDS-L-elsbetiae_contig1787:21754..219691622815744.3943071-CDS-L-elsbetiae_contig1787:21754..21969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 21755..21969 +
1691683074.5254056-CDS-L-elsbetiae_contig1787:21754..219691691683074.5254056-CDS-L-elsbetiae_contig1787:21754..21969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 21755..21969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1787.5095.1

>prot_L-elsbetiae_contig1787.5095.1 ID=prot_L-elsbetiae_contig1787.5095.1|Name=mRNA_L-elsbetiae_contig1787.5095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
CCRKGGTEELVDLFMSFRGRPSLSGTPGRSSLEPSPNALDLARLRADLVS
ARSLPCFQARPECLGMIDDVLTSCLPVAAMAESTAASGAARLVAEVAGGE
PAAVDASDVPAPRARSAALISTEPSAVGVGIGVGIGDKSKSNSSANDMDW
DPAPNPKQIQLVGPMSSSQTPSFAPAPYP
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mRNA from alignment at L-elsbetiae_contig1787:17361..21971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1787.5095.1 ID=mRNA_L-elsbetiae_contig1787.5095.1|Name=mRNA_L-elsbetiae_contig1787.5095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4611bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:17361..21971+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTGCCGCAAAGGTGGAACAGAAGAGTTGGTGGACTTATTCATGTCGTT
CCGCGGAAGACCTTCCCTTTCAGGAACACCTGGTCGTTCCTCGCTTGAGC
CAAGCCCCAATGCACTTGACCTGGCCAGGCTCCGGGCGGACCTTGTGTCT
GCGAGGAGCCTTCCATGCTTTCAGGTGTGTGGTGTGTGCAGGGCAACAGG
AAGGGAGCATGCAACCAACACAAAGTGCATTGGTAGAATGAAGAACGCTG
CTGCTTCTTGGTTTCGTTGGCGAGGGTCACCAAAGCGCAGAGACCGGAAG
TGAAGGACAAACGGATGCGTGTGTAAAGAGAGCGAGAGAGACAGAGAGAG
ACCGACGGACAGAGGGAGAGACTCCCGCACCTTCACATCGCGCACATGCA
CGTAGGATCCTCTGCCTCCTGCCCCCCTCTCTCTTTCTCCCTTTCTTTCT
CTCTCTTTCTCTCTCTTTCTCTCTCTTTCTGCCTGAGACGCGAAATTACA
GCTACAACATAGTAGAGGTGCGTTGCCATGTTTTGAGAGCTCGTTGCGCC
TCGCCTGCCTTTACGGTGCGAAGCCTCAAAACTATACACTTCTCGCGTCA
ACGGCCTCTCCCACTGCGACAAACCCAGCGTTACTACTGCTGTTGTACCC
GAACATATTGTGGACCGTACGCCGTGGACAGGCAACGCAGACATTTCAAC
ATTTTCTCGCAACAGCAGTAGTACTTAGTAAAGCTGCTGTAAAATATACT
CCTACTTTGTAATACGGTACAACTGGTCGAGGATCCCTGCTGTTGGTCCG
GTCAGCGTACATGATGTAGCTCGTGTTTAAGGAGGCACATACTCCGGCGC
GTTTTTACCTTCTAGTACCCAAGCCCTCGGATTTCTTTCTTATCAACCGA
AGCCAGTTATCGCGCCATCCTGGCTGCCGCTGATTGGCCGAGAAAGACAG
TCCCTGTCAAAATCCAGCTGCGGCGACCCTCAAAAAGTATGACTTGCATT
TCTGGCATTTTTTTACGGTTTGGCGATACAGAAGACTATGTTGTAGAGAC
GTGAGGTGACCTGGGCTTCTGGGTGTGTAAACACACCCAAGCAGCGAGCT
GCCCTCACACAAAAGAGCGTGGCGGGCGGAGCAACCCGCTTTAAGCTCAG
CAGACGGTGTTTCTCTAGACTTCACAGCGAAGCGGTGTGATTCTACCCGC
TCAGCGGCTCAAGCAAGGGGCCTCCCGGAATGCAGGTTCAGGCACCACAC
CCCAGAAACATGGATAAGACGAGATCGAGGGGGGGGGGTCTTATTATATA
CGAAGTAGGATTTAGTATGGTTGTACCCGTGACGCTTACTACCACCCCCC
CTCCTCCAATTTCCTAGGGTCGGTGGATCCTGACGACGCCATCTAGGGTC
CTGACGACTCCATTTATACTAATTCCTATATAGAACACAACATCAATAAG
CCCACAATTGGAGGGGGGGGGGCTGTGGTGTCTGAGCCTGCATTCCGGGA
GGCCCGCTTGGCTCAAGCTGGGGGCGCTGCGGAAAGTACAGAGTTTGCAA
TCGCAGAGAGACGTTCTATTTCGTGATTTTGAGACATCAGCGACAACTCG
GTTGTGTTCCCAGCGCTGCTGTGGAGCTGTGTAGAGAGCATTCAGGTATG
TGTCCACGTACTATGTACTACTCCCAGCCTTTTTTCGGGATCCAATGACT
ATGTACCATTACACCTCTTACGTCGTAGAACGCAGGTGGCCAAAGTTAGG
TGTCGCCAGATCGTCGCCAAACGGGCTGACAGTACTACAAGGGTTAAGGA
GGGACATCCTGGGACAGGAAACGCAATAAACACAGCAGTGTCTCAGTATA
GCCCCACACGGAGAAACCGATACAGTATCTCAGCTCCCTAACCCTAACCC
TGAAAGCGACTTCGAGGCTGTGTCCAATAGTAGACGTTTGTAGCTTACAG
AGCTGGCCAAAAGTGTGGGCGGCAATTAGGTCACAATAACCCTTGGCATC
GCACAATTTAGATGGGGGAGAGAGAGTTAGAGAGACGAGAGAGAGAGAGA
GAGAGAGAGGCAGCTGAGAGACAGATTGCAGGACGATTTCTTGCGCGGGC
AGAGCTTGTTGGTCCCTCAGCAGACTGCGCACATTAGCAAGACAACGGCT
TCAGGTGTGCAGATCACCCCTTTCACGCCACGAGTGGGGGTTACAGCGGT
AGCACTTGCTACTGCCGATCTCCGCTGCTGTTGGCCCGACCGAGCGCACC
AACGTGTGTCGGAAGGCAGCTCTGAATCGACACGCACAGAGCGATTTGGG
GTCTAACATCTGCACAGCAGGCACTAGATATGAGCAGTACATGGGTCGTA
CATCCTATGGTCTGTTTCGTCCGGGATGGGGCATGCGGGGCCTAGCGCAC
GGGGTGCAAGTGGCGTGCCTGAGGAGAGGCGGAGGCCTTTTTGGTGGGGT
GTCTTCAATGCGCGTGTTTTTTTTTTTTACTGCGGGGCCCCGGAGCATGT
CTCGTGATCGTGACTGGGGAAAACCATCCGTACTCTGCGACACCGAAGGA
TAAGGATCGATTCGCCTCGTTCTTCCTTCTTCACCCTCGAGAAAAAGTAC
AGGAGCTACACACAAATAGAAATTTATTATTTTCTCATGGCCAACGGGTG
TGTGTCTCAGCTCTAGGCACTCATAAGCCAAAAAAAAATAATCTACATAC
TGCATTTTGTTTTTATTTTTTGGCCTCCGTAAAAAAACTATTTTTTAGCC
AAGAAGGACCTCATCTTTGGCGTCCTTTTAAAAAAAAACTTGAACAATTA
CTCACTGCGGTTGCGCATGGCATATATAATCCCGTGTCCTAAAGTGCGAC
GGTGGGGCCGTAGACCGACCCCCCGTTACACAGACACAGCACGACGAATC
CATGCAGAAGTGGTGCCCAGAACCCGCCCTTTTTTGTAATGTCACGTGTG
CCCCCTCCCTATGTACCTTTTTTTAATTAATGTATACAAATGTCAGTAGT
CTACGTACATCCAGTGTGTGAGAATACAAATGTCAGTAGTCTACGTACAT
CCAGTGTGTGAAAATACAAATGTCAGTAGTCTACGTACCTACATCCAGTG
TGTGAAAAAAGTCGTTCCAGAGGAATCTGTTGTAGGCACACTATGTAACC
CCCTTTTGTGTCACTTTTTCCCTACAACAACATACAACATAGGAGTACAT
GCCTGTGTACAATGTTTTCATGTTCTTACTCTTCTGATGCTGTTGTCTGC
TTGGTAGGCACGACCGGAGTGTCTGGGTATGATCGACGACGTGCTGACGA
GCTGCCTGCCCGTCGCGGCCATGGCCGAGTCGACCGCGGCATCCGGCGCG
GCGCGGCTGGTGGCGGAAGTAGCTGGGGGGGAGCCGGCCGCGGTGGACGC
TAGTGGTGGGTTGCAAGCCTGTGCTCAACAACCGTTTCAAGCCTGGCGGT
AAATGTAGGCATGCCGCGTTGGTAACAGCGAGAAGGTTCCAATTCCACGG
CGCCCCCCTGGACCGCCATACTGCTGTGCATGTACACAAGAACAGATTAC
CAGACAACACTATTTTTGCGCGACGCAACAGTGAAAGGGGATTGGGCAAG
GGAGTCCAGCAGTGCCGTTATTTTCTCTTGGTAGGCAGTCCAAAAATGAA
TGTTTGGTCTACAATACTGCCTTACCATGCATACATACAGCGTGGCCCCG
GTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGCAGACG
ACGAATAAGGCAATACTGGGAGGGGCGGGGGGGGAGGAATGCACAAGGCA
GAACAATCAGTTGAGCTGCCGGCGCCCGGGAATCTTCCCTCGAGGGCAGA
CAGAAAAATGCCTGCCCTCAAGACGGTACAACATTGTTCTTGGAGGTAGA
CACGCAGAAAAATGCACGACGGGTTTCCAGCAGTCAGCCTAGTTCACAGC
TGTCCCAACCCTAAACCCTAACCCTAACCCAACCCCCAAGCTTGGTTGGT
GGACATTGGTTAGGTTCTAGGTCGCTGTAACCGGTGAAACAGCATGAGGG
CAGGCATTTTACTTCTGCCCTCGGGAGCAGATTCCCGGGCGCCGTTGAGC
TGCTGTGGTGTTTCCCCCCGGCCCCCACACTTGTCTTCGCAAAACCACAT
CGTAGGATCAAAGAAAAACACCGCCGACGACACGACCCTCCTCCGTTGAT
CTTTATTTTTGTAAAAAAATATGTTTTTTTTTCTTTTTGCGTGCGCGCGC
GCACCTGCACCGGACGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCC
TGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTGTCGTTGCTACG
CGTGTGCTTACTTCCACTCATTCGTACCTTGGGGGGGACAGCAGATGTCC
CCGCCCCAAGGGCGCGGTCGGCCGCTCTGATCTCGACCGAACCGAGCGCG
GTCGGCGTCGGCATCGGCGTCGGCATCGGCGACAAGAGCAAGAGCAACAG
CAGCGCCAACGACATGGACTGGGACCCGGCCCCCAACCCGAAGCAGATTC
AGCTCGTCGGGCCGATGTCGTCGTCCCAGACACCGTCGTTCGCCCCTGCC
CCGTACCCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1787:17361..21971+

>mRNA_L-elsbetiae_contig1787.5095.1 ID=mRNA_L-elsbetiae_contig1787.5095.1|Name=mRNA_L-elsbetiae_contig1787.5095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:17361..21971+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTGCCGCAAAGGTGGAACAGAAGAGTTGGTGGACTTATTCATGTCGTT
CCGCGGAAGACCTTCCCTTTCAGGAACACCTGGTCGTTCCTCGCTTGAGC
CAAGCCCCAATGCACTTGACCTGGCCAGGCTCCGGGCGGACCTTGTGTCT
GCGAGGAGCCTTCCATGCTTTCAGTGTTGCCGCAAAGGTGGAACAGAAGA
GTTGGTGGACTTATTCATGTCGTTCCGCGGAAGACCTTCCCTTTCAGGAA
CACCTGGTCGTTCCTCGCTTGAGCCAAGCCCCAATGCACTTGACCTGGCC
AGGCTCCGGGCGGACCTTGTGTCTGCGAGGAGCCTTCCATGCTTTCAGGC
ACGACCGGAGTGTCTGGGTATGATCGACGACGTGCTGACGAGCTGCCTGC
CCGTCGCGGCCATGGCCGAGTCGACCGCGGCATCCGGCGCGGCGCGGCTG
GTGGCGGAAGTAGCTGGGGGGGAGCCGGCCGCGGTGGACGCTAGTGGCAC
GACCGGAGTGTCTGGGTATGATCGACGACGTGCTGACGAGCTGCCTGCCC
GTCGCGGCCATGGCCGAGTCGACCGCGGCATCCGGCGCGGCGCGGCTGGT
GGCGGAAGTAGCTGGGGGGGAGCCGGCCGCGGTGGACGCTAGTGATGTCC
CCGCCCCAAGGGCGCGGTCGGCCGCTCTGATCTCGACCGAACCGAGCGCG
GTCGGCGTCGGCATCGGCGTCGGCATCGGCGACAAGAGCAAGAGCAACAG
CAGCGCCAACGACATGGACTGGGACCCGGCCCCCAACCCGAAGCAGATTC
AGCTCGTCGGGCCGATGTCGTCGTCCCAGACACCGTCGTTCGCCCCTGCC
CCGTACCCCATGTCCCCGCCCCAAGGGCGCGGTCGGCCGCTCTGATCTCG
ACCGAACCGAGCGCGGTCGGCGTCGGCATCGGCGTCGGCATCGGCGACAA
GAGCAAGAGCAACAGCAGCGCCAACGACATGGACTGGGACCCGGCCCCCA
ACCCGAAGCAGATTCAGCTCGTCGGGCCGATGTCGTCGTCCCAGACACCG
TCGTTCGCCCCTGCCCCGTACCCC
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