mRNA_L-elsbetiae_contig1783.5082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1783.5082.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 3.210e-128 Identity = 441/541 (81.52%), Postives = 455/541 (84.10%), Query Frame = 1 Query: 184 MPWICGEPECKKQPYYADPGTKKPKFCFLHKLIGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTAEKEGRPMWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDRDRIRRRCRLHKLEDMXXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQEGMLNLKTRAFRCKYRGTSGIGLMDDPMMPMPAGKTAPCNRACRFAYPGEEAVYCVKHKMNGMVDVINPSCKMQDCPERPTHXXXXXXXXXXXXXXXXXXKTITAVHHKPAGLHWSAELRRQANAHARERGKTEEEMEAGSARCTPIPPKAGTYEERMMRMDSANAAAIEAAAXXXRGPEXXXANMALNSREMLSAATAPIXXXXXXXXXXXXXXXXXXXXXXEALDPS-SITSAELALAFSGLP 1803 MPWICGEPECKKQPYYA+PG KKPK+CFLHK GHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KEGRPMW XXXXXXXXXXXXXXXXXXXXXXXXX YDRDRIRRRCRLHKL+DM XXXXXXXXXXXXXXXXX GFPGLKPRFCSEHKQ+GMLNLKTRAFRCKYRG +G+G+ DDPMMP+PAGKT PCNRACR+AYPGEEAVYC KHK+NGMVDVINPSC XXXXXXXXXXXXXXXXX K I A KP GLHWSAELRRQA A+ARER K E EMEAGSARCTP+PPKAGT EE+ MR XXXRGPE ANMALNSREMLSA+T PI A P SITSAELALAFSGLP Sbjct: 1 MPWICGEPECKKQPYYAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKPIAA--QKPTGLHWSAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEV-------------AAPPGMSITSAELALAFSGLP 526
BLAST of mRNA_L-elsbetiae_contig1783.5082.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 351 bits (900), Expect = 4.060e-105 Identity = 376/622 (60.45%), Postives = 391/622 (62.86%), Query Frame = 1 Query: 184 MPWICGEPECKKQPYYADPGTKKPKFCFLHKLIGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTAEKEGRPMWXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------YDRDRIRRRCRLHKLEDMXXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQEGMLNLK-------------------------------------------------------------------TRAFRCKYRGTSGIGLMDDPMMPMPAGKTAPCNRACRFAYPGEEAVYCVKHKMNGMVDVINPSCKMQDCPERPTHXXXXXXXXXXXXXXXXXXKTITAVHHKPAGLHWSAELRRQANAHARERGKTEEEMEAGSARCTPIPPKAGTYEERMMRMDSANAAAIEAAAXXXRGPEXXXANMALNSREMLSAATAPIXXXXXXXXXXXXXXXXXXXXXXEALDPS-SITSAELALAFSGLP 1803 MPWICGE ECKKQPYY +PG KKPK+CFLHK G IDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KEGRPMW DRIRRRCRLHKL+DM GFPGLKPRFCSEHKQ+GMLNLK TRAFRCKYRG +G+G+ DDPMMP+PAGKT PCNRACR+AYPGEEAVYC KHK+NGMVDVINPSCK K I A KP GLHW+AELRRQA A+ARER K E EMEAGSARCTP+PPKAGT EE+ MR XXXRGPE ANMALNSREMLSA+T PI A P SITSAELALAFSGLP Sbjct: 1 MPWICGETECKKQPYYGEPGQKKPKYCFLHKKPGQIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDTRSTKAHRQIVSARVQWDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYRRCLNTTTPPSPVFAIGVGFSSLAWQRRCKTSPPLGVCHRGIGFSSPANDVVKQANSLRELGNQTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCKAH---------------------MAVGMKPIAA--QKPTGLHWNAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEM-------------AAPPGMSITSAELALAFSGLP 586
BLAST of mRNA_L-elsbetiae_contig1783.5082.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI) HSP 1 Score: 154 bits (388), Expect = 8.440e-36 Identity = 301/461 (65.29%), Postives = 329/461 (71.37%), Query Frame = 1 Query: 196 CGEPECKKQPYYADPGTKKPKFCFLHKLIGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTAEKEGRPMWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDRDRIRRRCRLHKLEDMXXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQEGMLNLKTRAFRCKYRGTS--------GIGLMDDPMMPMPAGKTAP-----------CNRACRFAYPGEEAVYCVKHKMNGMVDVINPSCKMQDCPERPTHXXXXXXXXXXXXXXXXXXKTITAVHHKPAGLHWSAELRRQANAHARERGKTEEEMEAGSARCTPIPPK 1521 C C+KQPY+A PKFC++HK H+DVR K CE C+++P+YG++G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N+ G++KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K GR WXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ DR+RRRCRL XXXXXXXXXXXXXXXXX G G K RFCSEHKQEGM+NLKTRAFRCK+RG GK AP CNRACRFAYP E AVYC H + GMVDV+NP C M DC E PT+ + I LHWS+E RRQA A A E + +AGSA+ + +PPK Sbjct: 6 CEWAACQKQPYFALDMRDAPKFCYMHKSDIHVDVRKKSCEADKCDVKPNYGFEGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNFPGEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGRAKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRCKHRGEPKPXXXXXXXXXXXXXXXXXTRNGKGAPPNKKKSRRAVTCNRACRFAYPNEMAVYCAVHALEGMVDVLNPQCSMDDCLEIPTYGFAGEQPTFCMVHSGPGMQVIMP--QSTNVLHWSSEARRQAAASALEAKRIAGLRQAGSAKVSTLPPK 464 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1783.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1783.5082.1 >prot_L-elsbetiae_contig1783.5082.1 ID=prot_L-elsbetiae_contig1783.5082.1|Name=mRNA_L-elsbetiae_contig1783.5082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=563bp MPWICGEPECKKQPYYADPGTKKPKFCFLHKLIGHIDVRNKRCEVPNCEIback to top mRNA from alignment at L-elsbetiae_contig1783:274..12730- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1783.5082.1 ID=mRNA_L-elsbetiae_contig1783.5082.1|Name=mRNA_L-elsbetiae_contig1783.5082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12457bp|location=Sequence derived from alignment at L-elsbetiae_contig1783:274..12730- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1783:274..12730- >mRNA_L-elsbetiae_contig1783.5082.1 ID=mRNA_L-elsbetiae_contig1783.5082.1|Name=mRNA_L-elsbetiae_contig1783.5082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3378bp|location=Sequence derived from alignment at L-elsbetiae_contig1783:274..12730- (Laminarionema elsbetiae ELsaHSoW15)back to top |