mRNA_L-elsbetiae_contig17822.5079.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17822.5079.1
Unique NamemRNA_L-elsbetiae_contig17822.5079.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17822.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17822contigL-elsbetiae_contig17822:1473..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size956
Cds size801
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17822.5079.1prot_L-elsbetiae_contig17822.5079.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17822 1627..2563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.9932194-UTR-L-elsbetiae_contig17822:1472..16261622815742.9932194-UTR-L-elsbetiae_contig17822:1472..1626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17822 1473..1626 +
1691683073.6470103-UTR-L-elsbetiae_contig17822:1472..16261691683073.6470103-UTR-L-elsbetiae_contig17822:1472..1626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17822 1473..1626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.0072303-CDS-L-elsbetiae_contig17822:1626..19171622815743.0072303-CDS-L-elsbetiae_contig17822:1626..1917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17822 1627..1917 +
1691683073.6558187-CDS-L-elsbetiae_contig17822:1626..19171691683073.6558187-CDS-L-elsbetiae_contig17822:1626..1917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17822 1627..1917 +
1622815743.0176494-CDS-L-elsbetiae_contig17822:2053..25631622815743.0176494-CDS-L-elsbetiae_contig17822:2053..2563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17822 2054..2563 +
1691683073.6643245-CDS-L-elsbetiae_contig17822:2053..25631691683073.6643245-CDS-L-elsbetiae_contig17822:2053..2563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17822 2054..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17822.5079.1

>prot_L-elsbetiae_contig17822.5079.1 ID=prot_L-elsbetiae_contig17822.5079.1|Name=mRNA_L-elsbetiae_contig17822.5079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
MLQTVLTRTQGMEMTRQEAEESERARHRVVEMEEAQKQRAIAWKRRIAEK
ALKRARQKMARVEREEAELRGQPGGMGLAEGRPWMYQSKEEQKDDAENPF
SPVERAQLPQHVFRSIDESELRSMCRGRGPCNPTLRSVKHFTLVNTGGED
PIIELWPCNSGSLSSNVIETRELRGKSGRGISKHRSTAYNSMKMFGVTKS
GKYVVAPDSAISKTLGFDHDLNMDVRRFKMFLLESRLRMEKNKSQGHHKG
ASIHWFEGRGVGSGNVV
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mRNA from alignment at L-elsbetiae_contig17822:1473..2563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17822.5079.1 ID=mRNA_L-elsbetiae_contig17822.5079.1|Name=mRNA_L-elsbetiae_contig17822.5079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1091bp|location=Sequence derived from alignment at L-elsbetiae_contig17822:1473..2563+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTCTGATGCTATGCCGGACAATGGCCGCAAAGGGGATTGGTTGCTCAT
TCTCTTCCGTGTATTTACCACCCTTCTGCTGCCAGTGTACGCAGCTGCAC
AACTTTTGAGGGTAGGTCAAGAGAAGTGTGTGTGTGTGTGTGTGCATCTG
ATTCATGCTACAGACCGTATTGACGCGCACACAGGGTATGGAGATGACAC
GGCAAGAGGCGGAGGAGTCGGAGAGGGCGAGACATCGGGTGGTCGAGATG
GAAGAGGCACAGAAGCAGCGGGCGATAGCATGGAAACGACGGATAGCAGA
GAAGGCGCTGAAGAGAGCACGTCAGAAGATGGCGAGGGTAGAGCGTGAAG
AGGCAGAGCTTCGGGGGCAGCCGGGAGGAATGGGGCTGGCGGAGGGACGG
CCATGGATGTATCAGTCGAAGGAGGAGCAGAAAGATGATGCCGAGGTGTG
TTGAGTAGAAGTACGCAGAAGCAAGCTACATTCTCTCCCATTTTGTCAAA
TCCCTTTCGAACTGTAAGACTACGCTGAGTCTGAACTAAATATACTCCTT
GGTCGTATTTACCTGTGTGTCTTGAATACAGAACCCCTTCAGCCCCGTGG
AGCGCGCACAACTACCTCAACATGTCTTCCGCTCGATCGATGAGTCCGAA
CTACGCTCAATGTGTCGAGGTCGAGGTCCGTGCAACCCCACTTTACGATC
CGTGAAACATTTCACGTTGGTCAACACGGGTGGCGAGGACCCTATCATCG
AATTGTGGCCATGTAACTCGGGTTCACTCTCTTCCAATGTCATTGAGACG
CGTGAACTACGTGGGAAAAGTGGTCGGGGAATATCCAAGCATAGATCTAC
TGCGTACAACAGCATGAAAATGTTCGGCGTTACGAAAAGCGGGAAGTATG
TTGTAGCTCCGGATAGCGCAATCTCTAAGACGCTGGGCTTCGATCACGAT
CTGAACATGGACGTTCGGAGGTTTAAGATGTTTTTGCTAGAGTCGCGTCT
GAGGATGGAAAAGAACAAAAGTCAAGGGCACCACAAGGGGGCGTCTATAC
ACTGGTTCGAGGGCCGAGGAGTGGGTTCGGGAAATGTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17822:1473..2563+

>mRNA_L-elsbetiae_contig17822.5079.1 ID=mRNA_L-elsbetiae_contig17822.5079.1|Name=mRNA_L-elsbetiae_contig17822.5079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig17822:1473..2563+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACAGACCGTATTGACGCGCACACAGGGTATGGAGATGACACGGCA
AGAGGCGGAGGAGTCGGAGAGGGCGAGACATCGGGTGGTCGAGATGGAAG
AGGCACAGAAGCAGCGGGCGATAGCATGGAAACGACGGATAGCAGAGAAG
GCGCTGAAGAGAGCACGTCAGAAGATGGCGAGGGTAGAGCGTGAAGAGGC
AGAGCTTCGGGGGCAGCCGGGAGGAATGGGGCTGGCGGAGGGACGGCCAT
GGATGTATCAGTCGAAGGAGGAGCAGAAAGATGATGCCGAGATGCTACAG
ACCGTATTGACGCGCACACAGGGTATGGAGATGACACGGCAAGAGGCGGA
GGAGTCGGAGAGGGCGAGACATCGGGTGGTCGAGATGGAAGAGGCACAGA
AGCAGCGGGCGATAGCATGGAAACGACGGATAGCAGAGAAGGCGCTGAAG
AGAGCACGTCAGAAGATGGCGAGGGTAGAGCGTGAAGAGGCAGAGCTTCG
GGGGCAGCCGGGAGGAATGGGGCTGGCGGAGGGACGGCCATGGATGTATC
AGTCGAAGGAGGAGCAGAAAGATGATGCCGAGAACCCCTTCAGCCCCGTG
GAGCGCGCACAACTACCTCAACATGTCTTCCGCTCGATCGATGAGTCCGA
ACTACGCTCAATGTGTCGAGGTCGAGGTCCGTGCAACCCCACTTTACGAT
CCGTGAAACATTTCACGTTGGTCAACACGGGTGGCGAGGACCCTATCATC
GAATTGTGGCCATGTAACTCGGGTTCACTCTCTTCCAATGTCATTGAGAC
GCGTGAACTACGTGGGAAAAGTGGTCGGGGAATATCCAAGCATAGATCTA
CTGCGTACAACAGCATGAAAATGTTCGGCGTTACGAAAAGCGGGAAGTAT
GTTGTAGCTCCGGATAGCGCAATCTCTAAGACGCTGGGCTTCGATCACGA
TCTGAACATGGACGTTCGGAGGTTTAAGATGTTTTTGCTAGAGTCGCGTC
TGAGGATGGAAAAGAACAAAAGTCAAGGGCACCACAAGGGGGCGTCTATA
CACTGGTTCGAGGGCCGAGGAGTGGGTTCGGGAAATGTCGTCAACCCCTT
CAGCCCCGTGGAGCGCGCACAACTACCTCAACATGTCTTCCGCTCGATCG
ATGAGTCCGAACTACGCTCAATGTGTCGAGGTCGAGGTCCGTGCAACCCC
ACTTTACGATCCGTGAAACATTTCACGTTGGTCAACACGGGTGGCGAGGA
CCCTATCATCGAATTGTGGCCATGTAACTCGGGTTCACTCTCTTCCAATG
TCATTGAGACGCGTGAACTACGTGGGAAAAGTGGTCGGGGAATATCCAAG
CATAGATCTACTGCGTACAACAGCATGAAAATGTTCGGCGTTACGAAAAG
CGGGAAGTATGTTGTAGCTCCGGATAGCGCAATCTCTAAGACGCTGGGCT
TCGATCACGATCTGAACATGGACGTTCGGAGGTTTAAGATGTTTTTGCTA
GAGTCGCGTCTGAGGATGGAAAAGAACAAAAGTCAAGGGCACCACAAGGG
GGCGTCTATACACTGGTTCGAGGGCCGAGGAGTGGGTTCGGGAAATGTCG
TC
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