mRNA_L-elsbetiae_contig17820.5078.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17820.5078.1
Unique NamemRNA_L-elsbetiae_contig17820.5078.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17820.5078.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K)

HSP 1 Score: 130 bits (327), Expect = 1.090e-34
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 RRSILMEAMALKGLEIRDDSVYCHDYVHGVIDVDLDEIVGIQYITRELFDSGGPRFWSEHHCACESAFRQALLESG 228
            RR +L +AM L+GL+IR DSVYCHDY+ G+IDVDL+E+VGIQYITRELFD+GGPRFWSE+H ACESA+RQALLE+G
Sbjct:  302 RRRVLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYRQALLENG 377
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BLAST of mRNA_L-elsbetiae_contig17820.5078.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.220e-33
Identity = 57/76 (75.00%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 RRSILMEAMALKGLEIRDDSVYCHDYVHGVIDVDLDEIVGIQYITRELFDSGGPRFWSEHHCACESAFRQALLESG 228
            RR +L +AM L+GL+IR DSVYCHDY+ G+IDVDL+E+VGIQYITRELFD+GGPRFWSE+H ACESA+R+ALLE+G
Sbjct:  446 RRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYREALLENG 521
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17820.5078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN81_ESV1K1.090e-3476.32EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K[more]
A0A6H5JM66_9PHAE3.220e-3375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17820contigL-elsbetiae_contig17820:213..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.946983-CDS-L-elsbetiae_contig17820:212..4251622815742.946983-CDS-L-elsbetiae_contig17820:212..425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17820 213..425 -
1691683073.6303344-CDS-L-elsbetiae_contig17820:212..4251691683073.6303344-CDS-L-elsbetiae_contig17820:212..425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17820 213..425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.958488-UTR-L-elsbetiae_contig17820:425..4401622815742.958488-UTR-L-elsbetiae_contig17820:425..440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17820 426..440 -
1691683073.6389527-UTR-L-elsbetiae_contig17820:425..4401691683073.6389527-UTR-L-elsbetiae_contig17820:425..440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17820 426..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17820.5078.1prot_L-elsbetiae_contig17820.5078.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17820 213..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17820.5078.1

>prot_L-elsbetiae_contig17820.5078.1 ID=prot_L-elsbetiae_contig17820.5078.1|Name=mRNA_L-elsbetiae_contig17820.5078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MEAMALKGLEIRDDSVYCHDYVHGVIDVDLDEIVGIQYITRELFDSGGPR
FWSEHHCACESAFRQALLESG
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mRNA from alignment at L-elsbetiae_contig17820:213..440-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17820.5078.1 ID=mRNA_L-elsbetiae_contig17820.5078.1|Name=mRNA_L-elsbetiae_contig17820.5078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig17820:213..440- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGCTCTATTTTGATGGAGGCCATGGCGCTGAAGGGGCTGGAGATTAG
AGACGATAGTGTGTACTGCCACGACTACGTGCATGGCGTGATCGATGTGG
ACTTGGATGAGATTGTTGGCATCCAGTACATCACGCGCGAGCTGTTTGAT
TCCGGCGGGCCGCGGTTCTGGAGCGAGCACCACTGTGCGTGCGAGTCTGC
GTTCCGCCAGGCTTTGTTAGAGAGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17820:213..440-

>mRNA_L-elsbetiae_contig17820.5078.1 ID=mRNA_L-elsbetiae_contig17820.5078.1|Name=mRNA_L-elsbetiae_contig17820.5078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig17820:213..440- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCCATGGCGCTGAAGGGGCTGGAGATTAGAGACGATAGTGTGTA
CTGCCACGACTACGTGCATGGCGTGATCGATGTGGACTTGGATGAGATTG
TTGGCATCCAGTACATCACGCGCGAGCTGTTTGATTCCGGCGGGCCGCGG
TTCTGGAGCGAGCACCACTGTGCGTGCGAGTCTGCGTTCCGCCAGGCTTT
GTTAGAGAGCGGTATGGAGGCCATGGCGCTGAAGGGGCTGGAGATTAGAG
ACGATAGTGTGTACTGCCACGACTACGTGCATGGCGTGATCGATGTGGAC
TTGGATGAGATTGTTGGCATCCAGTACATCACGCGCGAGCTGTTTGATTC
CGGCGGGCCGCGGTTCTGGAGCGAGCACCACTGTGCGTGCGAGTCTGCGT
TCCGCCAGGCTTTGTTAGAGAGCGGT
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