mRNA_L-elsbetiae_contig17819.5076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17819.5076.1
Unique NamemRNA_L-elsbetiae_contig17819.5076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17819.5076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17819contigL-elsbetiae_contig17819:2557..3228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.7172692-CDS-L-elsbetiae_contig17819:2556..29041622815742.7172692-CDS-L-elsbetiae_contig17819:2556..2904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17819 2557..2904 +
1691683073.4706407-CDS-L-elsbetiae_contig17819:2556..29041691683073.4706407-CDS-L-elsbetiae_contig17819:2556..2904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17819 2557..2904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.729229-UTR-L-elsbetiae_contig17819:2904..32281622815742.729229-UTR-L-elsbetiae_contig17819:2904..3228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17819 2905..3228 +
1691683073.4804573-UTR-L-elsbetiae_contig17819:2904..32281691683073.4804573-UTR-L-elsbetiae_contig17819:2904..3228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17819 2905..3228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17819.5076.1prot_L-elsbetiae_contig17819.5076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17819 2557..2904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17819.5076.1

>prot_L-elsbetiae_contig17819.5076.1 ID=prot_L-elsbetiae_contig17819.5076.1|Name=mRNA_L-elsbetiae_contig17819.5076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
ARPPGRGLLYLKTVLNPDLRWSTVEPLIRKSRVPVLLTFLSKPGWNPNTL
SYERAATVYNSEVKIRRSRFRVLKKTMYAKTYRHLLHTTSLNSRRHRTML
EQQYRTHPIAYCAIL*
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mRNA from alignment at L-elsbetiae_contig17819:2557..3228+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17819.5076.1 ID=mRNA_L-elsbetiae_contig17819.5076.1|Name=mRNA_L-elsbetiae_contig17819.5076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig17819:2557..3228+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGGCCTCCGGGCCGAGGGCTCTTGTACCTTAAAACCGTACTAAACCC
AGACCTTAGATGGTCTACAGTGGAACCCCTTATAAGAAAGTCGCGGGTGC
CTGTGCTCTTAACATTTTTAAGCAAGCCAGGCTGGAACCCAAACACGCTT
TCTTATGAGCGGGCCGCTACTGTATACAACTCAGAAGTAAAGATCCGACG
ATCCAGATTTCGCGTTTTAAAAAAGACAATGTACGCTAAAACATATCGTC
ATTTACTACACACGACAAGCCTCAACAGTAGACGACACCGTACCATGCTA
GAGCAACAATACCGCACGCACCCTATAGCATACTGCGCAATATTGTAAAA
AAAGCGGGTTGAACTCCTTGGCCTTCACAGAAAGGTGACTACATTTCGGA
ACACTCCTTCCACATCCAGCTCTACCAGGGCCTCCACCAGCGCTGCCAGG
TCCATGTCATGACCATCACCACTACTACCCCCACCCCCGGCCCCCGTGGA
TTGGCGCTTCGTCGGAGACGTTGCTGCGTCGTCTCCGCCGCCATCTACGG
GAGGCTTCTCCGCCCTCGCACGAAGCATGATCAACCAGCCCCCGCGGCGC
CACGCCTGGTCTGCCATTTCAGCCAGGTCTATCAGGTCCATGACATGCCA
CGTGAGGTCGATCGGGTGTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17819:2557..3228+

>mRNA_L-elsbetiae_contig17819.5076.1 ID=mRNA_L-elsbetiae_contig17819.5076.1|Name=mRNA_L-elsbetiae_contig17819.5076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig17819:2557..3228+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGGCCTCCGGGCCGAGGGCTCTTGTACCTTAAAACCGTACTAAACCC
AGACCTTAGATGGTCTACAGTGGAACCCCTTATAAGAAAGTCGCGGGTGC
CTGTGCTCTTAACATTTTTAAGCAAGCCAGGCTGGAACCCAAACACGCTT
TCTTATGAGCGGGCCGCTACTGTATACAACTCAGAAGTAAAGATCCGACG
ATCCAGATTTCGCGTTTTAAAAAAGACAATGTACGCTAAAACATATCGTC
ATTTACTACACACGACAAGCCTCAACAGTAGACGACACCGTACCATGCTA
GAGCAACAATACCGCACGCACCCTATAGCATACTGCGCAATATTGTAAGC
AAGGCCTCCGGGCCGAGGGCTCTTGTACCTTAAAACCGTACTAAACCCAG
ACCTTAGATGGTCTACAGTGGAACCCCTTATAAGAAAGTCGCGGGTGCCT
GTGCTCTTAACATTTTTAAGCAAGCCAGGCTGGAACCCAAACACGCTTTC
TTATGAGCGGGCCGCTACTGTATACAACTCAGAAGTAAAGATCCGACGAT
CCAGATTTCGCGTTTTAAAAAAGACAATGTACGCTAAAACATATCGTCAT
TTACTACACACGACAAGCCTCAACAGTAGACGACACCGTACCATGCTAGA
GCAACAATACCGCACGCACCCTATAGCATACTGCGCAATATTGTAA
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