mRNA_L-elsbetiae_contig17810.5074.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17810.5074.1
Unique NamemRNA_L-elsbetiae_contig17810.5074.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17810.5074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17810contigL-elsbetiae_contig17810:44..3159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.6331303-CDS-L-elsbetiae_contig17810:44..1261622815742.6331303-CDS-L-elsbetiae_contig17810:44..126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17810 45..126 -
1691683073.4408152-CDS-L-elsbetiae_contig17810:44..1261691683073.4408152-CDS-L-elsbetiae_contig17810:44..126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17810 45..126 -
1622815742.6473215-CDS-L-elsbetiae_contig17810:3019..31591622815742.6473215-CDS-L-elsbetiae_contig17810:3019..3159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17810 3020..3159 -
1691683073.4502664-CDS-L-elsbetiae_contig17810:3019..31591691683073.4502664-CDS-L-elsbetiae_contig17810:3019..3159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17810 3020..3159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17810.5074.1prot_L-elsbetiae_contig17810.5074.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17810 45..3159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17810.5074.1

>prot_L-elsbetiae_contig17810.5074.1 ID=prot_L-elsbetiae_contig17810.5074.1|Name=mRNA_L-elsbetiae_contig17810.5074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
ESEEVSRQTKSDAFLALMDIMSREEIQNFLGNSGEGGRGAYGSHTRSMKP
KSFNACTRPHSVERIIRQVQKETV
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mRNA from alignment at L-elsbetiae_contig17810:44..3159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17810.5074.1 ID=mRNA_L-elsbetiae_contig17810.5074.1|Name=mRNA_L-elsbetiae_contig17810.5074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3116bp|location=Sequence derived from alignment at L-elsbetiae_contig17810:44..3159- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGTGAGGAGGTGAGTCGTCAGACTAAAAGTGATGCGTTTCTTGCCTT
GATGGATATCATGAGCAGGGAAGAGATCCAAAACTTTCTCGGAAACAGTG
GGGAAGGGGGTCGAGGGGCATACGGTTCACATACTCGCTCGCCTTCTGTT
GACACCTCGCGGCGTGCAAGGGGTAAAGGAAGGGACGTTTCGGCTGGCGA
TGAAGCGTACGCACGCAAAATGCATGCGGAAGAACTGGCTAACCGTAGGC
ATGAGGATGAACTTCAACAACGCGAAAGTGCGAAATTCGCTCACAAGTTG
AAGGAGGAGGAGTCTAGTGAATTGGAGGTTTCACCCTCCTCAGAGGAGTC
CTCGGCCCCGTCAGTTCTCGCGAATAATTCCTTTTGTGCCCTGGCGGACT
GGAGTGATGGGGAAACGGACGATTTGCCTCAAACCCTCGGTGTGCCTCCT
TTGCGTCCTCTCTCTTCCGTGTGTCAGACAGTGGGGAAAAGAGGTAAAAA
GGAGGTGGAAGGGAGGGAGAAGTCGGAGGATGAGGTGAAGTTGCCAGGGT
TAAAACAGACTCATGCGCGTGCCAAAAGGGAGTTTGCGGTAACACAGAAA
GCTCTACAAGTCGCAGACAGAAATCATAGAGAGGCAACAGGGGAGGTACA
GAAGGTTTTGAGGAAACTTTCTAAGGCCAAAAGGGAGGAAGAGCCAAAGA
TGCAATCACACTATTCGCGTGTGGAGGCAGCAACGAAACAGTGGGATGGG
TTACAAAGCCAAATCCAAACCACTGAGGCTCAGGTAGAGGAAAGTAATGC
CTGGCTAGAACAGGCAAGAAGGGAAGAGAGTGAGATGAAAAAGAGTATGG
CTGACGGGGCACAGGCTCTCAATGTTGCTAAAGCGAAATACGCTGCGGCA
TCCACAGAACTCACCCTCAAGTTGGACAAGGCAAAGGCTGTAGCGATAAA
ACTTTCCGGAGTTAAGGAGGAGAGTGAAAAGGCGCACCAGAAAGCACGAG
GTGTGCAAGAAGGAGCCCTTATTGCATTCAGAGCAGTGGCCAAAGCGGTA
GGGGTGTGGGACGATGGTCTCGGGAAGCAACTCTCGCCGGCTGCACTAGA
GGCGCGTAGCAAGAAAGAACTTCAGCTCAAGAAACTGAGAGAGCAGAAGC
CGGTTGTGCCGAGCGTGTTGGGTGTGTCGGGCGTGTCGGATGCGTCGGGG
GACGAGTTCACAATTCCTAAAAAACCGGAGGAGTGGCAACGCATCGCGGA
AAAAGCGCGTGCGATGTTCCCAGAGTTGGACGGGCAAGCCTTGCTTGAAG
CATACCAGAAGGCAGAAGAAACAAAATCTGTTTTCCAAAAAGCCTTCTCT
TCCCAGGGTGGTGTGCCTTCCCCACCCTCTAGCACCGCATCCTCTAAATC
CAAGAAAAAGAAAAAGAAAAACGCGGGGGAAGCAGGTCCTTTCTCTCCAG
GTAGGGGAGGAAGAGGTGGTTCTTTCTCTCCGGGTAGGGGAGGAAGAGGT
TCTTTCTCTCTCGGGAGGGGAGGAGGAGGTGGTGGTCGCGGTGACTTTCA
GGGTGGTAGGGGGGGCGGGGGTGACCAGTACGGTCAGCCGCACTTCCAAG
ACGTTCAGTACTGGGAGCAGCAGCAGCCGTGGCTTGCACCGCAGCAGCAG
CAGTGGCACGGGCCGCCGCAGCAGCAGCCGTGGCAAGGGCAGCAGCAGCA
GCAGCAGCAGCCGCAGCAGCCGCAGCAGCAGCAGCAGTCTTGGCGTCCGG
TCGAAGGGGGTGGTCCGGGAGGAGACCAGACGATTTTCCGGGACCAGAAG
GGTAACTTTCACACCAGGTGCGTGGGGAAGGAGTCTCAGAGTGTTGCAGA
GGGTTCGCTTTTGACCGAGGAGAAAGTGGAAGTATCCCTGGCAGAAGAAA
AGAACACCGCAGTAGAGAGTGAGGCACTGGAAAACGAAAGAGTGGCCGCT
CTCGCCAAGTTAAAAATAGAAAGAGACGAATTGCAGCGGCGTGTGGATGA
GCACGAGGCAAGACGTAAGGCGGAAGTTGAGATCAGCAAAGACAAAGAAT
CTCAATGGACAGTTACAATGCAGTCCAGTGCAGAGGTAGGTGGTGATGAC
ACAGGGAAGGTGAAGACAAGGGAAGGTGTGGTAGCGGGTGGGGTGCCCAA
CACAGGGACTACATCGCAGGCTGATAGGCATAAAATCACGATGGCATACG
CCAAAATGAATCCCAATGTCTTTAAAAAGTTGCCATCACTTCCGTTGGAG
GCGGATACAGTTGCCGAGCTCGTTCTTTTCACCAGAACCATGAAGTCAGT
CGTGGAGAATGGTAGAGAGGCAGCGGGCGACGTGGAGAGTGAGTGGGTCT
CTGGTTGGGACAAGCCGGTAGAGAAACATGTGCTGAATGCGATCGATTCC
CGTCGCATTGGTTCCACGCAGGCGCTGAACCTCACGACGAGGGTGTCTCA
GGTGTTTGAAGATGCCCGGGAGAAGATGCGGCAGGGGATGGTGGGTCCCC
TGGCATTTGATCGTCTGGTCCAGGACCTGGGAAGGATGGTGAGCAAAGCA
ACGCCAAATGCGTTGGTGTTTGAGCTCAACAACCTGTCGGTACCTGCGGG
GACTGTGTATGACGCTTACTTTAGCCAGCTGCAGGGGTTGGTTGAAAACG
CAAAAAGTCTAGGCCACATGTCACCGAGTGATAGTATCTTACAGCACGCG
GTGAGGGCGAGCGTGAGTGACCAGTTTAGTGTCTTGACAGCAAACATGTT
TAAAGGCAAGGCGCAGGGGGAAATGCCGTTCGATAGTATCAGTGAGCTCA
TGTCAGAGCTGAAATCTTTCGAAGGTGTTCGGGCACAGGCATCAGTGGCA
AACAGAACGCTGATGCAGGTAACGGGTAAGAGCGCGGTGGGGGCGCGGTA
TACGGGTTTTGGTGGATCGGGGGGATCGGTTCCGGGGGCGAGAGCTTCGC
CTTACAGGGCGGCGTCACCGGCACGATCGCAGAGTGGTAAGGGGTATCAG
GGACGGGTGATGACTGTTGCGGAGGAACTCGAGGATGAAACCCAAGAGTT
TCAACGCGTGTACGAGGCCTCACAGCGTAGAGCGGATCATTCGACAGGTA
CAAAAAGAGACTGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17810:44..3159-

>mRNA_L-elsbetiae_contig17810.5074.1 ID=mRNA_L-elsbetiae_contig17810.5074.1|Name=mRNA_L-elsbetiae_contig17810.5074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig17810:44..3159- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGTGAGGAGGTGAGTCGTCAGACTAAAAGTGATGCGTTTCTTGCCTT
GATGGATATCATGAGCAGGGAAGAGATCCAAAACTTTCTCGGAAACAGTG
GGGAAGGGGGTCGAGGGGCATACGGTTCACATACTCGCTCGAGAGTGAGG
AGGTGAGTCGTCAGACTAAAAGTGATGCGTTTCTTGCCTTGATGGATATC
ATGAGCAGGGAAGAGATCCAAAACTTTCTCGGAAACAGTGGGGAAGGGGG
TCGAGGGGCATACGGTTCACATACTCGCTCGATGAAACCCAAGAGTTTCA
ACGCGTGTACGAGGCCTCACAGCGTAGAGCGGATCATTCGACAGGTACAA
AAAGAGACTGTCGATGAAACCCAAGAGTTTCAACGCGTGTACGAGGCCTC
ACAGCGTAGAGCGGATCATTCGACAGGTACAAAAAGAGACTGTC
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