mRNA_L-elsbetiae_contig1780.5071.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1780.5071.1
Unique NamemRNA_L-elsbetiae_contig1780.5071.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1780.5071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1780contigL-elsbetiae_contig1780:18591..19664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.1321967-CDS-L-elsbetiae_contig1780:18591..191121622815742.1321967-CDS-L-elsbetiae_contig1780:18591..19112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 18592..19112 -
1691683073.090079-CDS-L-elsbetiae_contig1780:18591..191121691683073.090079-CDS-L-elsbetiae_contig1780:18591..19112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 18592..19112 -
1622815742.1463957-CDS-L-elsbetiae_contig1780:19543..196641622815742.1463957-CDS-L-elsbetiae_contig1780:19543..19664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 19544..19664 -
1691683073.0990486-CDS-L-elsbetiae_contig1780:19543..196641691683073.0990486-CDS-L-elsbetiae_contig1780:19543..19664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 19544..19664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1780.5071.1prot_L-elsbetiae_contig1780.5071.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1780 18592..19664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1780.5071.1

>prot_L-elsbetiae_contig1780.5071.1 ID=prot_L-elsbetiae_contig1780.5071.1|Name=mRNA_L-elsbetiae_contig1780.5071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp
EPEEKGGTGDDEGGGQEGEIGLDAEGDLDLPSRVTLRKRRAGGARSVGSS
SSVDGDATLSSSDAPAAAAEAAEAGEVKGDFAAASSSPQPSLPPERSSSQ
LLRERDADVDADADAEPPWRRSAASPAAGEEGHHGANHFDGSMDESSYHF
SEYALSVEGAAESPMMGAAAAAGTAAGSGRGAWRPGDEFSAVAAAAAVAE
GVSDPQRAAAAEEE
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mRNA from alignment at L-elsbetiae_contig1780:18591..19664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1780.5071.1 ID=mRNA_L-elsbetiae_contig1780.5071.1|Name=mRNA_L-elsbetiae_contig1780.5071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig1780:18591..19664- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCAGAGGAGAAAGGGGGCACGGGCGACGACGAGGGGGGGGGGCAGGA
AGGGGAGATAGGACTCGACGCGGAAGGAGACTTAGACTTGCCTTCAAGGG
TTACCCTGAGAAAGCGGAGAGGTCAGTGGCATGGGGGGCTCCGGCGTATG
ATTTATTGTGGTTCTGCTATGCCGCTGTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCCTGTTGTTCTGGTTGTTGTTTTCATGTATTTGT
TGCTCGAAGATTTGGTTTCGCTAACGTGCCGTCGTTCTCGAACCTGACGG
TTTCTCGGCCCGGTTCGAGCATGTATGCTGTCGTCGGGCATGGGACGGCA
ATGACTGCAGCAACCCACCGGATCCCCACGGACCATTTTTAGGTTTGGCA
CCACGTGCTTTCACAGGTACACCCTCGATTCGTGTTCTGGCTTGACTCGG
GGCAAAAATTTTAGGCCGAATACTTTTCTACCCTTTTCCTTGACGCCGCG
TTCGTTCCGCTCTGCGATCTTCTGCGCCACGGACAATGGCCGGGGTCGAC
AGCCGGCGGCGCCAGAAGCGTCGGCAGCAGCAGCAGCGTTGACGGAGATG
CCACGCTGTCATCATCGGATGCACCAGCAGCAGCAGCGGAGGCAGCGGAG
GCAGGAGAAGTCAAGGGTGATTTTGCTGCTGCTTCTTCGTCCCCGCAGCC
ATCCTTGCCGCCGGAACGCAGCAGCAGCCAGCTGCTGCGGGAGCGAGACG
CCGACGTGGACGCGGACGCAGACGCGGAGCCCCCATGGAGGCGTTCCGCG
GCGTCCCCTGCGGCCGGCGAAGAGGGGCATCACGGGGCCAACCACTTCGA
CGGGAGCATGGACGAGAGCTCGTACCACTTCTCGGAGTACGCGTTGTCCG
TCGAGGGTGCCGCCGAGAGCCCGATGATGGGCGCCGCTGCCGCCGCCGGG
ACGGCTGCGGGATCGGGCCGGGGGGCTTGGCGTCCTGGTGACGAGTTCTC
GGCGGTGGCGGCGGCGGCGGCCGTGGCCGAGGGCGTTTCCGATCCACAAA
GAGCGGCGGCGGCAGAGGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1780:18591..19664-

>mRNA_L-elsbetiae_contig1780.5071.1 ID=mRNA_L-elsbetiae_contig1780.5071.1|Name=mRNA_L-elsbetiae_contig1780.5071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig1780:18591..19664- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCAGAGGAGAAAGGGGGCACGGGCGACGACGAGGGGGGGGGGCAGGA
AGGGGAGATAGGACTCGACGCGGAAGGAGACTTAGACTTGCCTTCAAGGG
TTACCCTGAGAAAGCGGAGAGGAGCCAGAGGAGAAAGGGGGCACGGGCGA
CGACGAGGGGGGGGGGCAGGAAGGGGAGATAGGACTCGACGCGGAAGGAG
ACTTAGACTTGCCTTCAAGGGTTACCCTGAGAAAGCGGAGAGCCGGCGGC
GCCAGAAGCGTCGGCAGCAGCAGCAGCGTTGACGGAGATGCCACGCTGTC
ATCATCGGATGCACCAGCAGCAGCAGCGGAGGCAGCGGAGGCAGGAGAAG
TCAAGGGTGATTTTGCTGCTGCTTCTTCGTCCCCGCAGCCATCCTTGCCG
CCGGAACGCAGCAGCAGCCAGCTGCTGCGGGAGCGAGACGCCGACGTGGA
CGCGGACGCAGACGCGGAGCCCCCATGGAGGCGTTCCGCGGCGTCCCCTG
CGGCCGGCGAAGAGGGGCATCACGGGGCCAACCACTTCGACGGGAGCATG
GACGAGAGCTCGTACCACTTCTCGGAGTACGCGTTGTCCGTCGAGGGTGC
CGCCGAGAGCCCGATGATGGGCGCCGCTGCCGCCGCCGGGACGGCTGCGG
GATCGGGCCGGGGGGCTTGGCGTCCTGGTGACGAGTTCTCGGCGGTGGCG
GCGGCGGCGGCCGTGGCCGAGGGCGTTTCCGATCCACAAAGAGCGGCGGC
GGCAGAGGAGGAGCCGGCGGCGCCAGAAGCGTCGGCAGCAGCAGCAGCGT
TGACGGAGATGCCACGCTGTCATCATCGGATGCACCAGCAGCAGCAGCGG
AGGCAGCGGAGGCAGGAGAAGTCAAGGGTGATTTTGCTGCTGCTTCTTCG
TCCCCGCAGCCATCCTTGCCGCCGGAACGCAGCAGCAGCCAGCTGCTGCG
GGAGCGAGACGCCGACGTGGACGCGGACGCAGACGCGGAGCCCCCATGGA
GGCGTTCCGCGGCGTCCCCTGCGGCCGGCGAAGAGGGGCATCACGGGGCC
AACCACTTCGACGGGAGCATGGACGAGAGCTCGTACCACTTCTCGGAGTA
CGCGTTGTCCGTCGAGGGTGCCGCCGAGAGCCCGATGATGGGCGCCGCTG
CCGCCGCCGGGACGGCTGCGGGATCGGGCCGGGGGGCTTGGCGTCCTGGT
GACGAGTTCTCGGCGGTGGCGGCGGCGGCGGCCGTGGCCGAGGGCGTTTC
CGATCCACAAAGAGCGGCGGCGGCAGAGGAGGAG
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