mRNA_L-elsbetiae_contig1780.5070.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1780.5070.1
Unique NamemRNA_L-elsbetiae_contig1780.5070.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1780.5070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1780contigL-elsbetiae_contig1780:16255..18489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size988
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1780.5070.1prot_L-elsbetiae_contig1780.5070.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1780 16739..18489 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0572667-UTR-L-elsbetiae_contig1780:16254..167381622815742.0572667-UTR-L-elsbetiae_contig1780:16254..16738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1780 16255..16738 -
1691683073.0478394-UTR-L-elsbetiae_contig1780:16254..167381691683073.0478394-UTR-L-elsbetiae_contig1780:16254..16738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1780 16255..16738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0705333-CDS-L-elsbetiae_contig1780:16738..169121622815742.0705333-CDS-L-elsbetiae_contig1780:16738..16912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 16739..16912 -
1691683073.0617504-CDS-L-elsbetiae_contig1780:16738..169121691683073.0617504-CDS-L-elsbetiae_contig1780:16738..16912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 16739..16912 -
1622815742.0824625-CDS-L-elsbetiae_contig1780:17470..177021622815742.0824625-CDS-L-elsbetiae_contig1780:17470..17702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 17471..17702 -
1691683073.0728765-CDS-L-elsbetiae_contig1780:17470..177021691683073.0728765-CDS-L-elsbetiae_contig1780:17470..17702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 17471..17702 -
1622815742.0938957-CDS-L-elsbetiae_contig1780:18391..184891622815742.0938957-CDS-L-elsbetiae_contig1780:18391..18489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 18392..18489 -
1691683073.0815055-CDS-L-elsbetiae_contig1780:18391..184891691683073.0815055-CDS-L-elsbetiae_contig1780:18391..18489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1780 18392..18489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1780.5070.1

>prot_L-elsbetiae_contig1780.5070.1 ID=prot_L-elsbetiae_contig1780.5070.1|Name=mRNA_L-elsbetiae_contig1780.5070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MHGGGRGLANAVILDDDGGGGSTGGGDGQNSLSNSGGAAGAVGDFAVFVD
REDGGHGDGDEEEGYDDDFDDDFDDDDGGGDAVAEEALPATRDGVGGAEE
HVFFGAQGSGGPDEDAEQAAGLMKAEDEEWEARIGLSAESSVAVGSGGDD
DALDSEAYDEIEDAQSI*
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mRNA from alignment at L-elsbetiae_contig1780:16255..18489-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1780.5070.1 ID=mRNA_L-elsbetiae_contig1780.5070.1|Name=mRNA_L-elsbetiae_contig1780.5070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2235bp|location=Sequence derived from alignment at L-elsbetiae_contig1780:16255..18489- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGGCGGTGGTCGTGGTCTTGCCAACGCGGTCATCCTCGACGATGA
CGGTGGTGGCGGTTCGACGGGCGGCGGCGACGGCCAGAACTCCCTAAGGT
GAGAACAAGACCAACGAAACACCAGGCACGCACATGCATGCATCATTCGC
GTGCTGCTCCTGACGCAACGGAGGGGTACTTTCGATGACATATATCTAGA
TACAACCATGTATTTCTAAATTGTGTGTTTTTTACTGGTTGTTTGTTTGT
GCAGTTTATACCGAGCTTGGGGCCTCCCTGTCTGTCTTCTCTGGTCGCTC
GCGTCTTATCCTTGGTGGATCTACCCGGTGCATTGTAGCGCCTTTGTAAC
CTACCTCCCCGACTGCTATTTACTACTGCTGTAAGGGCCGAGTGAAGCTT
GGGGCATCATGGCGGTTCAGTTGGGCAGGCACCACTGCTGCAAAGCAATC
TGGCCGACCTCGTTCGATAGTCCTGTGTGCAAGAACAAGTACATATGTAC
ACAACGACAATATTCTGGCTGAATGAAACACGTGTCTGTTTAACTGAGTG
CAACAGACACCATCAGGTTTGTTGTCGGATGAGTGTTTCTCTTGTAGCAA
AGGCGGAGCAAGGCGAAGCAAGGCAACACCATCGTCGGCTTTTCCAGCCA
TCTTGATCTGGTGTGTTTGTTCCCCACGTGTTCGCCCGGTCCAAACTCGT
ACCGATACGCCCATCTGTCTGTGTGTCTGTGTGTCTGTCCGTCTGCCTGC
CTGCCTGCCTGCCTGCCTGCCCCACCGCACGCAACAGCAATAGTGGTGGT
GCTGCAGGGGCCGTAGGCGATTTCGCTGTCTTCGTCGACAGGGAGGACGG
TGGACACGGGGACGGGGACGAGGAAGAAGGGTATGATGACGACTTTGACG
ACGACTTTGACGACGATGACGGCGGCGGCGACGCGGTGGCGGAGGAGGCG
TTGCCGGCCACGAGAGACGGCGTCGGAGGAGCAGAGGAGCACGTATTTTT
CGGAGCACAGGGTTCAGGGGTGAGACTCACTCACACACACACACACGAGA
GAGAGAGAGAGAGAGAGAGAGAGACGGTCTTGGTCGACACTTAATGACGA
TTATACAGCCTTTGGTCTATGGTGCATGCCTACGCATTGCTGGGAATTAG
ATGTAAAAGTAAATGCTTCGTGCGTATCTTGGGGGGTGATCTATCTGGTG
AATTCCCCACTCATTCGGTGGTGGGGTCAATGATCTGACTTGTGAGGTGC
CTCATCCCTCCCCAAAGGCGCGAACGCAACACGGTAAACATCGCGTCTAG
ACATTTAGGATGCTTAGATACCCATGGATGCAGCGCACGAAGAGCATACC
TACCTCCCGGCTCTGCTCCATCGTCCGTCTCGAGAGGGTCAAGTGCCTAA
AAGGTCGGAGTTTATGTATGCACTGGTTGCAGAGACGTGGACCGCGTCGA
CGTCATTGTTTGCGAAACTTGTCGCTTGCCTCCTCCCTACACTGCCCGAT
TCGCCCTCATCCCCCCCCGAACGGTGTTGTGGCCGCCCAAACCAAACGCC
TGCCTGCTGTCTGCCCGACTCTTTCAGGGCCCGGATGAAGACGCCGAGCA
AGCCGCGGGCCTGATGAAGGCGGAGGACGAGGAGTGGGAGGCGAGAATCG
GCCTGTCGGCAGAGAGCAGCGTTGCCGTAGGGTCGGGAGGGGACGACGAT
GCTCTGGATAGCGAAGCGTACGACGAGATCGAGGATGCGCAGAGCATTTA
GCAGAGTGGCAGTGGAACTGCCTACGTTTGTTTCCACGAGTTAGTAATGA
GCACAGGCCGTCCTCGGTGTTCGTGATGCAATCAGTCACTGACAGCACAC
ACGGCACTTACGTGAAGTTAGGGAATAGTGCAGCACGGGATACGGGATGC
TTCCCAATGACAAAAGTAGGTCCGTCCGAGACAATTTGTCTATTTACGTT
TTCGTGGTAGTGTTTGAAATAAATCGAAGTACACGGTTTTTCAGCCACGA
TAATGAACCAAACACATTCGAAAAATACTTTGGACACCCCCACACTAAGT
TCAAGTAATATCTTGGCCAATATCTTGGCCTAGATGTGGGTTTTGGACAA
AAAGCGGAATATTTGGGTGTGGGGAATTCCGATAGCTGTTCAAATCCGGT
CTATGAAATGTGTACTGAAAAAAACACACCGCGCTGGAAAAGCGAACAAA
CTTTTCCGGTCATTTGGTATTTACGAAGAGCCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1780:16255..18489-

>mRNA_L-elsbetiae_contig1780.5070.1 ID=mRNA_L-elsbetiae_contig1780.5070.1|Name=mRNA_L-elsbetiae_contig1780.5070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1780:16255..18489- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGGCGGTGGTCGTGGTCTTGCCAACGCGGTCATCCTCGACGATGA
CGGTGGTGGCGGTTCGACGGGCGGCGGCGACGGCCAGAACTCCCTAAGAT
GCACGGCGGTGGTCGTGGTCTTGCCAACGCGGTCATCCTCGACGATGACG
GTGGTGGCGGTTCGACGGGCGGCGGCGACGGCCAGAACTCCCTAAGCAAT
AGTGGTGGTGCTGCAGGGGCCGTAGGCGATTTCGCTGTCTTCGTCGACAG
GGAGGACGGTGGACACGGGGACGGGGACGAGGAAGAAGGGTATGATGACG
ACTTTGACGACGACTTTGACGACGATGACGGCGGCGGCGACGCGGTGGCG
GAGGAGGCGTTGCCGGCCACGAGAGACGGCGTCGGAGGAGCAGAGGAGCA
CGTATTTTTCGGAGCACAGGGTTCAGGGCAATAGTGGTGGTGCTGCAGGG
GCCGTAGGCGATTTCGCTGTCTTCGTCGACAGGGAGGACGGTGGACACGG
GGACGGGGACGAGGAAGAAGGGTATGATGACGACTTTGACGACGACTTTG
ACGACGATGACGGCGGCGGCGACGCGGTGGCGGAGGAGGCGTTGCCGGCC
ACGAGAGACGGCGTCGGAGGAGCAGAGGAGCACGTATTTTTCGGAGCACA
GGGTTCAGGGGGCCCGGATGAAGACGCCGAGCAAGCCGCGGGCCTGATGA
AGGCGGAGGACGAGGAGTGGGAGGCGAGAATCGGCCTGTCGGCAGAGAGC
AGCGTTGCCGTAGGGTCGGGAGGGGACGACGATGCTCTGGATAGCGAAGC
GTACGACGAGATCGAGGATGCGCAGAGCATTTAGGGCCCGGATGAAGACG
CCGAGCAAGCCGCGGGCCTGATGAAGGCGGAGGACGAGGAGTGGGAGGCG
AGAATCGGCCTGTCGGCAGAGAGCAGCGTTGCCGTAGGGTCGGGAGGGGA
CGACGATGCTCTGGATAGCGAAGCGTACGACGAGATCGAGGATGCGCAGA
GCATTTAG
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