mRNA_L-elsbetiae_contig178.5065.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig178.5065.1
Unique NamemRNA_L-elsbetiae_contig178.5065.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig178.5065.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.320e-12
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:  502 GIKPAGGTLGAGMQEFLSNKDQMVAATATLTAMALGIYTARTGTGV 639
            GIK AG TLGAG+QEFL +KD+MVAATATLTAMALGIYTARTGTGV
Sbjct:  232 GIKLAGDTLGAGLQEFLGDKDKMVAATATLTAMALGIYTARTGTGV 277
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BLAST of mRNA_L-elsbetiae_contig178.5065.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.140e-7
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:  502 GIKPAGGTLGAGMQEFLSNKDQMVAATATLTAMALGIYTARTGTGV 639
            GIK AG TLG G++ FL +K++M+AAT TLTA+ALGIYTA+TGTGV
Sbjct:  218 GIKLAGETLGTGIKTFLGDKEKMLAATTTLTAVALGIYTAKTGTGV 263
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BLAST of mRNA_L-elsbetiae_contig178.5065.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.000e-5
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:  502 GIKPAGGTLGAGMQEFLSNKDQMVAATATLTAMALGIYTARTGTGV 639
            GIK AG TLG G + FLS+K++M AA ATL+A+ALG+Y+A+ GTGV
Sbjct:  150 GIKLAGSTLGEGARAFLSDKEKMAAAVATLSAIALGVYSAKVGTGV 195
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BLAST of mRNA_L-elsbetiae_contig178.5065.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.590e-5
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  505 IKPAGGTLGAGMQEFLSNKDQMVAATATLTAMALGIYTARTGTGV 639
            I+ AG TLG G  EFL+N+ +M AA  TL+A ALGIY A+TGTGV
Sbjct:  180 IRLAGATLGGGASEFLANRQEMTAAVVTLSAAALGIYAAKTGTGV 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig178.5065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LJ37_9PHAE7.320e-1286.96AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YR91_9STRA2.140e-769.57AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2D4S5_9STRA1.000e-563.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836C9L2_9STRA4.590e-562.22AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig178contigL-elsbetiae_contig178:1516..2811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue4e-12
Seed eggNOG ortholog2880.D8LFV8
Preferred nameATAD3A
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons2
Model size648
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig178.5065.1prot_L-elsbetiae_contig178.5065.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig178 1945..2811 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.5650592-UTR-L-elsbetiae_contig178:1515..19441622815741.5650592-UTR-L-elsbetiae_contig178:1515..1944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig178 1516..1944 +
1691683072.652614-UTR-L-elsbetiae_contig178:1515..19441691683072.652614-UTR-L-elsbetiae_contig178:1515..1944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig178 1516..1944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.574991-CDS-L-elsbetiae_contig178:1944..20171622815741.574991-CDS-L-elsbetiae_contig178:1944..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 1945..2017 +
1691683072.6710978-CDS-L-elsbetiae_contig178:1944..20171691683072.6710978-CDS-L-elsbetiae_contig178:1944..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 1945..2017 +
1622815741.5847986-CDS-L-elsbetiae_contig178:2665..28111622815741.5847986-CDS-L-elsbetiae_contig178:2665..2811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 2666..2811 +
1691683072.6810932-CDS-L-elsbetiae_contig178:2665..28111691683072.6810932-CDS-L-elsbetiae_contig178:2665..2811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 2666..2811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig178.5065.1

>prot_L-elsbetiae_contig178.5065.1 ID=prot_L-elsbetiae_contig178.5065.1|Name=mRNA_L-elsbetiae_contig178.5065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MEEYYRLTLAMQKGGTGAAACGGRGIKPAGGTLGAGMQEFLSNKDQMVAA
TATLTAMALGIYTARTGTGVEI*
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mRNA from alignment at L-elsbetiae_contig178:1516..2811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig178.5065.1 ID=mRNA_L-elsbetiae_contig178.5065.1|Name=mRNA_L-elsbetiae_contig178.5065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig178:1516..2811+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTTGAGTGGGTCCTCGGTGTCCTGATGTAACCTAGTGCGAAGAAGTCG
TTTGTTTATTTCGCGGCCGACCCTTGGTAGAACGATCTGTTTCCCTGGTG
GAAGTGGGAGTTCAGCTTGCCACGCCAGATGCCGTTTGGCAGTTGCAGCT
GAGTTTCAAAAGTCTATTTACGCAGTGGGAAGTGTTCGCCTCCACGATGT
GTTTTATATTCAGCACTGCAGTGGCAAAGGGGTGCGGCACCACTATTCAT
TCTCGAGCTCATATTGAATCGTGAATTTGGAGATTTGGCGGGTCGTGCAA
CCAGCTAGTTTATCATGCCGCGGTCGGTAGCGGAGCTGCGGCGGCGGAGA
TCCTCTTCGCCCCCTCTTAGTCGGAGGCGGAGGACCCTCTGAAAAATACT
TGGCCGTGTCGGCCGACGAGCGGAGACCGATGGAGGAATACTACCGCCTG
ACGCTCGCGATGCAGAAGGGCGGGACAGGTGCTGCGGCTTGTGGTGGCCG
AGGTGAGGTTGCACTCGTTTCTCGTGCACATCGGATGATAGAAATCTGAC
CACGGACCTGAACCCGCCACACTGCAGTACACAGAGTTGTAATGTACAGT
AGTGTTTTCAGGAAGCAGAGCAAGCGGTGATACTTCGAACCATATACCAT
GCATGGTTGTTTTTGCACATCTCATACAAGCATGCGGCGTGGCTCTGCCG
ACCCGCTGCAAACTCTGCCAGCCTTGAACACACTGGCCTGCATGATGCAA
CGAAACGGGTGCTGACTGCTGGAGAGGTGATGTGTTTTTTATGGGCTGCG
TGCTGTTTTCGAAGAGGATTCAGCGCCGCTTGAAGCACGTGACAACGGGC
GGTGAAGCACATCCTTAGAGCTGGAGAAGGAGACAAGTTAGCGCAGAACG
GGGCAACATTGTATACGTATATACGTCCAGAGAGAGCCCGATCTACCGCT
GCGTACTACTAGTAGCGTGCAGAGCGCGCACACACGCCTCTTGTGCGATG
TATATACGCCAACCAGGCCCCCCGCCGCGCCCTCTGGGGCAAGCAATGAA
AGCGCCAATACACACTGAGTACATAGTTCCCTCCATGCGCTTCCCTCGCC
TGTCCCCTCGCCTGTCTTCTTTTTTGACGCCCATGCTGCCTGTTTTGCAG
GGATCAAGCCGGCGGGGGGCACGCTCGGCGCGGGTATGCAGGAGTTTCTG
AGCAATAAGGATCAGATGGTGGCGGCGACGGCCACCCTGACGGCCATGGC
CCTGGGGATCTACACCGCGAGAACGGGAACAGGTGTGGAGATATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig178:1516..2811+

>mRNA_L-elsbetiae_contig178.5065.1 ID=mRNA_L-elsbetiae_contig178.5065.1|Name=mRNA_L-elsbetiae_contig178.5065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig178:1516..2811+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAATACTACCGCCTGACGCTCGCGATGCAGAAGGGCGGGACAGG
TGCTGCGGCTTGTGGTGGCCGAGATGGAGGAATACTACCGCCTGACGCTC
GCGATGCAGAAGGGCGGGACAGGTGCTGCGGCTTGTGGTGGCCGAGGGAT
CAAGCCGGCGGGGGGCACGCTCGGCGCGGGTATGCAGGAGTTTCTGAGCA
ATAAGGATCAGATGGTGGCGGCGACGGCCACCCTGACGGCCATGGCCCTG
GGGATCTACACCGCGAGAACGGGAACAGGTGTGGAGATATAGGGATCAAG
CCGGCGGGGGGCACGCTCGGCGCGGGTATGCAGGAGTTTCTGAGCAATAA
GGATCAGATGGTGGCGGCGACGGCCACCCTGACGGCCATGGCCCTGGGGA
TCTACACCGCGAGAACGGGAACAGGTGTGGAGATATAG
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