mRNA_L-elsbetiae_contig17799.5064.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17799.5064.1
Unique NamemRNA_L-elsbetiae_contig17799.5064.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: D8LKD8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 7.770e-36
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RDIANFLRIYKKDLDPLSIGDFLSEPDVDGG+YWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR
Sbjct:  321 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGDYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 386
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.800e-36
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RDIANFLRIYKKDLDPLSIGDFLSEPDVDGG+YWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR
Sbjct:  318 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGDYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 383
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.380e-27
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RDIANFLR+Y+ DLDP SIGDFLSEPD+DG +Y++ IRLQY+RA+ FHGM+LEEALRHLLT+SGFR
Sbjct: 1749 RDIANFLRLYQADLDPGSIGDFLSEPDLDGTDYFRLIRLQYIRAVNFHGMSLEEALRHLLTNSGFR 1814
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.070e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPD-VDGGEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RD+A+FLR+Y+  LDP +IGD+L E        YW  +RL YVRA++FH MTLE+ALRH LT  GFR
Sbjct: 1338 RDVASFLRVYRDLLDPEAIGDYLGEGGHAHDAAYWSLLRLSYVRAVSFHNMTLEQALRHFLTRCGFR 1404
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A7R9VJ36_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJ36_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-15
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGG--EYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RD+A+FLR+++  +DP ++G++L E  +DG   EYW  IR  YVRAI+F GM +E+ LRH LT+ GFR
Sbjct:   99 RDVASFLRLHQSKIDPSALGEYLGEGGIDGRDVEYWNLIRFNYVRAISFVGMNVEQGLRHFLTNCGFR 166
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A1E7FPT4_9STRA (SEC7-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPT4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.670e-15
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGE--YWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RDI++FLRI+ +DL+P  +G +L E   D  E  +W  IR  Y+RAI+F GMT+EE LRHLLT  GFR
Sbjct:  138 RDISSFLRIHCEDLNPSDLGSYLGEGGSDPSETEFWNLIRFNYIRAISFVGMTVEEGLRHLLTQGGFR 205
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A7S4QRS1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QRS1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.080e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGG--EYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RD+A+FLRI++  LD +++G++L E   DG   EYW  IR  YVRAI+F GM +E+ LRH LT SGFR
Sbjct: 1465 RDVASFLRIHQARLDQIALGEYLGEGGKDGADIEYWNLIRFNYVRAISFVGMNVEQGLRHFLTCSGFR 1532
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A7S2LRY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LRY4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-13
Identity = 31/68 (45.59%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDG--GEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            + +++FLR+++  +DP  +G++L E  +DG   +YW  IR  YVRA++F GM +E+ALRH LT+ GFR
Sbjct:   96 KHVSSFLRVHQSSIDPAILGEYLGEGGIDGIDKDYWNLIRFYYVRAVSFVGMNIEKALRHFLTNCGFR 163
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: A0A7S2UHG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHG8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-13
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGE--YWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RDIA+FLRI++  LD   +GD+L E   DG E  +W  +R  YVRAI+F GM +E+ LRH LT+ GFR
Sbjct:  281 RDIASFLRIHQARLDSSVLGDYLGEGGKDGTEVEFWNLVRFNYVRAISFVGMNVEQGLRHFLTNCGFR 348
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BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Match: K3WHI1_GLOUD (SEC7 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHI1_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 5.250e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGEYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFR 198
            RD+ +FLR+Y    D   IGD+L E D D   +   +RL YVRAI+F GMTL E+LRH LT+ GFR
Sbjct:    9 RDVTSFLRMYHDSFDEAEIGDYLGEGDED---FKVQVRLSYVRAISFKGMTLVESLRHFLTNGGFR 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17799.5064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKD8_ECTSI7.770e-3698.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LAN0_9PHAE7.800e-3698.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFI0_9STRA6.380e-2777.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U6C9_9STRA3.070e-1656.72Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A7R9VJ36_9STRA1.420e-1551.47Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FPT4_9STRA4.670e-1554.41SEC7-like protein (Fragment) n=1 Tax=Fragilariopsi... [more]
A0A7S4QRS1_9STRA5.080e-1554.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2LRY4_9STRA1.100e-1345.59Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2UHG8_9STRA1.100e-1352.94Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K3WHI1_GLOUD5.250e-1353.03SEC7 domain-containing protein n=1 Tax=Globisporan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17799contigL-elsbetiae_contig17799:1322..2760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D8LKD8
Preferred nameYEL1
KEGG koko:K12494,ko:K17362,ko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759,KOG1729@1,KOG1729@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.4624076-CDS-L-elsbetiae_contig17799:1321..14561622815741.4624076-CDS-L-elsbetiae_contig17799:1321..1456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17799 1322..1456 -
1691683072.597485-CDS-L-elsbetiae_contig17799:1321..14561691683072.597485-CDS-L-elsbetiae_contig17799:1321..1456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17799 1322..1456 -
1622815741.4722319-CDS-L-elsbetiae_contig17799:2670..27601622815741.4722319-CDS-L-elsbetiae_contig17799:2670..2760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17799 2671..2760 -
1691683072.6089554-CDS-L-elsbetiae_contig17799:2670..27601691683072.6089554-CDS-L-elsbetiae_contig17799:2670..2760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17799 2671..2760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17799.5064.1prot_L-elsbetiae_contig17799.5064.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17799 1322..2760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17799.5064.1

>prot_L-elsbetiae_contig17799.5064.1 ID=prot_L-elsbetiae_contig17799.5064.1|Name=mRNA_L-elsbetiae_contig17799.5064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
RDIANFLRIYKKDLDPLSIGDFLSEPDVDGGEYWKAIRLQYVRAIAFHGM
TLEEALRHLLTDSGFRYGRPRVRA*
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mRNA from alignment at L-elsbetiae_contig17799:1322..2760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17799.5064.1 ID=mRNA_L-elsbetiae_contig17799.5064.1|Name=mRNA_L-elsbetiae_contig17799.5064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1439bp|location=Sequence derived from alignment at L-elsbetiae_contig17799:1322..2760- (Laminarionema elsbetiae ELsaHSoW15)
AGGGACATCGCCAACTTTTTACGCATCTACAAGAAGGACCTCGACCCTCT
CAGCATCGGAGACTTTCTGAGCGAGCCGGACGTCGATGGGGTAGGTTGCT
GGTTGGTTGTAGATACTGCGGTACCCCCTCCAGGGCCTGCCTTCCACGGC
GGGACCGGCCTACGCAGAAATTAACTTTATACTACTAACTCTAACCCTAA
CCCTAACCCTAACCCCAACCACCGACCCCCCCAAACGGTTTCCATACTTT
ATCCCATATGTTAGCTTAAGACAAAACCCCGCGTAGACTACTGCCACGGC
GCCCCCCCCCCCCCCTCTCTCTTTCTCTCTCCCCCTGTTTCCATCGACTT
TTACTTGCTTTTTGTTTTTGCTTGTGGTGCATCCACTAAACAAATCGCGT
CACAGTGAATTACGAGACACGACGCATAATTTGTTTTTTTTGGCGTAAGA
GTGGGTGGAGATTGTGTTGTCGGGATCAAACAATTAAACTACCGGTTGGT
TTGTGGCCGAAATTGGCGTGTGATCCTAGGGTGTCAGCTTCACTGAGTCG
CACGTTTTTGCCACCACTTGGAATCGTGTCTTGACTTTTAGAGTAGTGTG
TTTGTGTGTGTGCCCTTCCCATTTATTTTGGCGACAGTCCCCCAAGGGGA
GACGTGTACTACACCTTGCGGTTTACTTAGAGGTACTACACTTCAATTAA
TGTATACAAATGTCAGCACAGTCTACGTCCGGTCTGTGAAAATATCGTTC
CAGAGGGATTTGTTGTAGGCATACTAACCCCCTTTTTCCATCCCAAGATA
TGCTGACACAAAATCCTTTGCAGTGCATTTGTCTGTACAACTAGAACCAA
CCGGGGTCACACTGGAGGGGGGTGAACACTGGGGCTTTTTCTTCTTTTTC
TTGTTTAGCCCCACCTTCCTCCTGCGGTGGTTGCCTTCATTTTTATCGCG
AGGAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATCACGTCGAAGTT
TTGGTACTCACGAGCTTTTCAGCTTTCATCGCTTTCACCTGCAAAGTCAC
AATAGAAACACTTCTGCTTGGGGTTGAACTCCAGACTTTGCTGCGGGTGG
CCTCGAGGTTAAACCACTAGACCATTGGAATCATGTCTTGACTTTTATTA
GAGTAGGGCTATGTCTACGGCGGCTACAGCAGTAGTACGCGTTTGATGTT
TCGAGTTAAGCTGTGTCTCGTGTGCGTATTTTCACATGTACCTCTTTTGC
GCTCACGGCAGGGAGAGCATATTTTCACATGTACCTCTTTTGCGCTCACG
GCAGGGAGAGTACTGGAAAGCCATTCGGCTTCAGTACGTCCGCGCCATCG
CGTTCCACGGAATGACGCTGGAGGAGGCTTTACGACATCTCCTCACCGAC
AGCGGCTTCAGGTACGGTCGTCCCCGAGTTAGGGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17799:1322..2760-

>mRNA_L-elsbetiae_contig17799.5064.1 ID=mRNA_L-elsbetiae_contig17799.5064.1|Name=mRNA_L-elsbetiae_contig17799.5064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig17799:1322..2760- (Laminarionema elsbetiae ELsaHSoW15)
AGGGACATCGCCAACTTTTTACGCATCTACAAGAAGGACCTCGACCCTCT
CAGCATCGGAGACTTTCTGAGCGAGCCGGACGTCGATGGGAGGGACATCG
CCAACTTTTTACGCATCTACAAGAAGGACCTCGACCCTCTCAGCATCGGA
GACTTTCTGAGCGAGCCGGACGTCGATGGGGGAGAGTACTGGAAAGCCAT
TCGGCTTCAGTACGTCCGCGCCATCGCGTTCCACGGAATGACGCTGGAGG
AGGCTTTACGACATCTCCTCACCGACAGCGGCTTCAGGTACGGTCGTCCC
CGAGTTAGGGCTTGAGGAGAGTACTGGAAAGCCATTCGGCTTCAGTACGT
CCGCGCCATCGCGTTCCACGGAATGACGCTGGAGGAGGCTTTACGACATC
TCCTCACCGACAGCGGCTTCAGGTACGGTCGTCCCCGAGTTAGGGCTTGA
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