mRNA_L-elsbetiae_contig17795.5062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17795.5062.1
Unique NamemRNA_L-elsbetiae_contig17795.5062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17795.5062.1 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.010e-8
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  497 LRSPLARYLLLSAILVSLGLSLRYLWRQLAGLVGAALILSTARLW 631
            LR+PL RYLLLS +LV+ GL +R+LWRQLAGLVGAALILS AR W
Sbjct:  106 LRTPLERYLLLSVMLVAAGLGVRFLWRQLAGLVGAALILSAARRW 150
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17795.5062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Z5_ECTSI3.010e-875.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17795contigL-elsbetiae_contig17795:1286..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue3e-08
Seed eggNOG ortholog2880.D7G1Z5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28KK0@1,2QT1F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size823
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.3351152-UTR-L-elsbetiae_contig17795:1285..15591622815741.3351152-UTR-L-elsbetiae_contig17795:1285..1559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17795 1286..1559 +
1691683072.5362458-UTR-L-elsbetiae_contig17795:1285..15591691683072.5362458-UTR-L-elsbetiae_contig17795:1285..1559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17795 1286..1559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.3473635-CDS-L-elsbetiae_contig17795:1559..21081622815741.3473635-CDS-L-elsbetiae_contig17795:1559..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17795 1560..2108 +
1691683072.5479994-CDS-L-elsbetiae_contig17795:1559..21081691683072.5479994-CDS-L-elsbetiae_contig17795:1559..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17795 1560..2108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17795.5062.1prot_L-elsbetiae_contig17795.5062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17795 1560..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17795.5062.1

>prot_L-elsbetiae_contig17795.5062.1 ID=prot_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MVVVEPSSAPRPFVASTAPLSRSHVGRTRKGTGTRGQSRVPESSVEPPPA
RAIGAEEATTLQPPRARPDPSSSGLRSPLARYLLLSAILVSLGLSLRYLW
RQLAGLVGAALILSTARLWQSSAGGAATARGKSSGAATAAPSGSGRGAPR
KDASCGADGSEPAAEATGPRDGLGGSSSRREGG
back to top

mRNA from alignment at L-elsbetiae_contig17795:1286..2108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17795.5062.1 ID=mRNA_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=823bp|location=Sequence derived from alignment at L-elsbetiae_contig17795:1286..2108+ (Laminarionema elsbetiae ELsaHSoW15)
GTCATAGTCATTGCACAGCACAGGCTTGTGTGTAAGGGCGGCACTTGCTT
GGCGGGACGCGACGAAGACACGAAAGGAGGATAATAGACACCGATCACGG
AGGAGTGGGGAAACGTAAGACACAAGCGACGCTCCTCGGAAGGCTGCAGA
GAAGTGGGACCAACCTTACAGGGCACATCAACTCGATCGCGCCTCTTGCG
TAGGAACACAGAACACGTGTGCTGGCATCAACTGGTAGCAGGTAGACGCG
TTCGTGGCCAACGCCACCGCACGGATGGTGGTGGTAGAGCCGTCCTCGGC
GCCCCGGCCCTTCGTCGCCAGCACGGCGCCGTTGTCGCGCTCGCATGTTG
GTCGTACACGTAAAGGAACCGGCACCAGAGGGCAGAGCAGGGTACCGGAG
TCCAGCGTAGAGCCGCCTCCAGCACGGGCGATCGGCGCGGAGGAGGCTAC
CACGCTACAGCCGCCGCGTGCGCGCCCCGACCCAAGCAGTAGCGGGCTGC
GGAGCCCGCTGGCGCGCTACTTGCTGCTCTCGGCTATCCTGGTGTCCCTG
GGCCTGTCCTTGAGATACCTGTGGAGACAGCTCGCCGGCCTCGTCGGGGC
GGCGCTGATCCTGTCTACTGCCCGGCTTTGGCAGTCGTCTGCTGGGGGAG
CTGCTACTGCGAGGGGGAAATCCTCCGGCGCTGCTACAGCGGCGCCCTCC
GGCAGTGGCAGGGGTGCCCCACGAAAGGACGCTTCGTGCGGAGCCGACGG
CAGCGAACCTGCGGCGGAGGCAACGGGACCGCGGGACGGCCTCGGGGGTA
GCAGCAGTCGGCGGGAAGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17795:1286..2108+

>mRNA_L-elsbetiae_contig17795.5062.1 ID=mRNA_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig17795:1286..2108+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTGGTAGAGCCGTCCTCGGCGCCCCGGCCCTTCGTCGCCAGCAC
GGCGCCGTTGTCGCGCTCGCATGTTGGTCGTACACGTAAAGGAACCGGCA
CCAGAGGGCAGAGCAGGGTACCGGAGTCCAGCGTAGAGCCGCCTCCAGCA
CGGGCGATCGGCGCGGAGGAGGCTACCACGCTACAGCCGCCGCGTGCGCG
CCCCGACCCAAGCAGTAGCGGGCTGCGGAGCCCGCTGGCGCGCTACTTGC
TGCTCTCGGCTATCCTGGTGTCCCTGGGCCTGTCCTTGAGATACCTGTGG
AGACAGCTCGCCGGCCTCGTCGGGGCGGCGCTGATCCTGTCTACTGCCCG
GCTTTGGCAGTCGTCTGCTGGGGGAGCTGCTACTGCGAGGGGGAAATCCT
CCGGCGCTGCTACAGCGGCGCCCTCCGGCAGTGGCAGGGGTGCCCCACGA
AAGGACGCTTCGTGCGGAGCCGACGGCAGCGAACCTGCGGCGGAGGCAAC
GGGACCGCGGGACGGCCTCGGGGGTAGCAGCAGTCGGCGGGAAGGGGGCA
TGGTGGTGGTAGAGCCGTCCTCGGCGCCCCGGCCCTTCGTCGCCAGCACG
GCGCCGTTGTCGCGCTCGCATGTTGGTCGTACACGTAAAGGAACCGGCAC
CAGAGGGCAGAGCAGGGTACCGGAGTCCAGCGTAGAGCCGCCTCCAGCAC
GGGCGATCGGCGCGGAGGAGGCTACCACGCTACAGCCGCCGCGTGCGCGC
CCCGACCCAAGCAGTAGCGGGCTGCGGAGCCCGCTGGCGCGCTACTTGCT
GCTCTCGGCTATCCTGGTGTCCCTGGGCCTGTCCTTGAGATACCTGTGGA
GACAGCTCGCCGGCCTCGTCGGGGCGGCGCTGATCCTGTCTACTGCCCGG
CTTTGGCAGTCGTCTGCTGGGGGAGCTGCTACTGCGAGGGGGAAATCCTC
CGGCGCTGCTACAGCGGCGCCCTCCGGCAGTGGCAGGGGTGCCCCACGAA
AGGACGCTTCGTGCGGAGCCGACGGCAGCGAACCTGCGGCGGAGGCAACG
GGACCGCGGGACGGCCTCGGGGGTAGCAGCAGTCGGCGGGAAGGGGGC
back to top