mRNA_L-elsbetiae_contig17793.5060.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17793.5060.1
Unique NamemRNA_L-elsbetiae_contig17793.5060.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17793.5060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17793contigL-elsbetiae_contig17793:62..1542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size457
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17793.5060.1prot_L-elsbetiae_contig17793.5060.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17793 223..1542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.2210739-UTR-L-elsbetiae_contig17793:61..2221622815741.2210739-UTR-L-elsbetiae_contig17793:61..222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17793 62..222 +
1691683072.473807-UTR-L-elsbetiae_contig17793:61..2221691683072.473807-UTR-L-elsbetiae_contig17793:61..222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17793 62..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.2353492-CDS-L-elsbetiae_contig17793:222..2531622815741.2353492-CDS-L-elsbetiae_contig17793:222..253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 223..253 +
1691683072.4828327-CDS-L-elsbetiae_contig17793:222..2531691683072.4828327-CDS-L-elsbetiae_contig17793:222..253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 223..253 +
1622815741.2470393-CDS-L-elsbetiae_contig17793:745..9451622815741.2470393-CDS-L-elsbetiae_contig17793:745..945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 746..945 +
1691683072.490679-CDS-L-elsbetiae_contig17793:745..9451691683072.490679-CDS-L-elsbetiae_contig17793:745..945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 746..945 +
1622815741.2585173-CDS-L-elsbetiae_contig17793:1479..15421622815741.2585173-CDS-L-elsbetiae_contig17793:1479..1542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 1480..1542 +
1691683072.5018926-CDS-L-elsbetiae_contig17793:1479..15421691683072.5018926-CDS-L-elsbetiae_contig17793:1479..1542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17793 1480..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17793.5060.1

>prot_L-elsbetiae_contig17793.5060.1 ID=prot_L-elsbetiae_contig17793.5060.1|Name=mRNA_L-elsbetiae_contig17793.5060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MSSPSSSAGSAAAAAAAALSYQAKGALPGAGADDGKRPGSGQKKFRSGKT
AAEKAAEALAEPASLSARDEDDAGRSPTGLDSTPAVEDFVDFEGSDVG
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mRNA from alignment at L-elsbetiae_contig17793:62..1542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17793.5060.1 ID=mRNA_L-elsbetiae_contig17793.5060.1|Name=mRNA_L-elsbetiae_contig17793.5060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1481bp|location=Sequence derived from alignment at L-elsbetiae_contig17793:62..1542+ (Laminarionema elsbetiae ELsaHSoW15)
CTACAAGACCAGAACCTGCTAGATCCGAACGGGAACAAAGCCAGTACAGT
ACTCGCTTCTCCCACAGTGGCGTGTCGGCCAGGTAGTCTACTCTTGTTAC
GGTCGGCTTGCCACTTCTCCCCGCTTCTCCTCTGCGTACTTCGGGCGAGA
TCTTCTGCGACATGAGCTCCCCGTCTTCCTCTGCTGGTTCCGGTAAGCTG
TTGGCCTCTGGCCCGGTTATGCACGGCATGCGCACGCGCTCCCAGTCGCG
CGTGCCGCCCCTAGATGACGCGGTTGAGTGGCCGTTGCCCCACGCGGAGA
GCCTTGCTCGGGGATCGCTTGGATCCTCTCGGGGATCACTTGGACCCCAC
GGCGCTCGTGCTTCGGCCGACGCGGCCGGTAGACCCCCCTCCCCGCTCCG
CGATAGCTCGGACGGGAGCGTGACGGGTGGCGGGACCTTCCGTCCCTTGT
TTTCCACGAGTAGCGCACGGGGACGCGGTGCCCGTGGCAAAGCCAAGTCG
GGCTCGCCGCCCTCGCCCGACGTTGTCTCGCGTGTGCCGACTCGCGGCCA
CGCGGCCGTTACGCCTCGCGAGAACCCGCACATCGACTCTATGTTGCTCG
ATTTCGGCTTGTCGGCCCGCGATTTTTTATGTGACCCGGACTCGCGCCTG
CCGGTCGCCGCGTCCGCCGTTGCTGCCGCGGCAGCCGCCGCCGCCGCCGC
TGCCGCGTTGTCCTACCAGGCGAAGGGCGCCCTGCCGGGCGCTGGCGCCG
ACGACGGAAAGCGTCCCGGATCGGGCCAGAAGAAATTCCGCTCTGGCAAG
ACGGCGGCGGAGAAAGCTGCCGAGGCCCTCGCCGAGCCGGCGAGCCTTTC
CGCTCGCGACGAGGATGACGCTGGGCGTTCCCCGGTGAGAAGTGTTGCGT
TCGATTCCGTCCTAAGCGCTGTGTCTGGGTTGTCCGGGGGGCAGAGGGCG
GCCATCGCTGACGCGCTCAGCGGCCGCGAGGTGCGTGACGTGCCCGTTTC
TTACGCCCAAGCGGCGGCTTCCCCGGCGTTTGATTTCGATGACTCCGCGG
CCTCTGTGCAGCTCGCTCACCAGCTGCAGGCTGAGTTTGACCACGTCGAT
TCCGCTGACCGCGCTGCCATCGCGGCTGACGAACTGTATGCCCGCTCTCT
GTCTGGATCGGGGGGGGGTAGTGATTCTATGCCGGGTTCATCGTCGCGTG
CGCAGCGTAAGTCCCGGTCGCGTAGATCGGCGCGCGGCGCTGTCCCGGGC
CCACAGCCCCGCGTTCCGCTGCCCCGGGCGCGGGTCGGGAGCTTGAATGA
TCTGGCGACGCCTAACCCGTTCCGTCCCCTCGGCGATGACTGGGTCCCCG
TACCCGTTGCCCGCGCTGACCACGCCCCCTCTCTCGCCGCTCCGCGCGCC
ACCGGCCGCACCCGCCAGACGGGCCTGGACTCGACCCCCGCGGTGGAGGA
CTTCGTGGACTTCGAGGGGTCCGACGTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17793:62..1542+

>mRNA_L-elsbetiae_contig17793.5060.1 ID=mRNA_L-elsbetiae_contig17793.5060.1|Name=mRNA_L-elsbetiae_contig17793.5060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig17793:62..1542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCCCCGTCTTCCTCTGCTGGTTCCGATGAGCTCCCCGTCTTCCT
CTGCTGGTTCCGCCGCCGCCGCCGCCGCTGCCGCGTTGTCCTACCAGGCG
AAGGGCGCCCTGCCGGGCGCTGGCGCCGACGACGGAAAGCGTCCCGGATC
GGGCCAGAAGAAATTCCGCTCTGGCAAGACGGCGGCGGAGAAAGCTGCCG
AGGCCCTCGCCGAGCCGGCGAGCCTTTCCGCTCGCGACGAGGATGACGCT
GGGCGTTCCCCGCCGCCGCCGCCGCCGCTGCCGCGTTGTCCTACCAGGCG
AAGGGCGCCCTGCCGGGCGCTGGCGCCGACGACGGAAAGCGTCCCGGATC
GGGCCAGAAGAAATTCCGCTCTGGCAAGACGGCGGCGGAGAAAGCTGCCG
AGGCCCTCGCCGAGCCGGCGAGCCTTTCCGCTCGCGACGAGGATGACGCT
GGGCGTTCCCCGACGGGCCTGGACTCGACCCCCGCGGTGGAGGACTTCGT
GGACTTCGAGGGGTCCGACGTCGGCACGGGCCTGGACTCGACCCCCGCGG
TGGAGGACTTCGTGGACTTCGAGGGGTCCGACGTCGGC
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