mRNA_L-elsbetiae_contig17786.5057.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17786.5057.1
Unique NamemRNA_L-elsbetiae_contig17786.5057.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17786.5057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17786contigL-elsbetiae_contig17786:2567..3297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17786.5057.1prot_L-elsbetiae_contig17786.5057.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17786 2788..3240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.8785646-UTR-L-elsbetiae_contig17786:2566..27871622815740.8785646-UTR-L-elsbetiae_contig17786:2566..2787Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17786 2567..2787 +
1691683072.1983497-UTR-L-elsbetiae_contig17786:2566..27871691683072.1983497-UTR-L-elsbetiae_contig17786:2566..2787Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17786 2567..2787 +
1622815740.9049318-UTR-L-elsbetiae_contig17786:3240..32971622815740.9049318-UTR-L-elsbetiae_contig17786:3240..3297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17786 3241..3297 +
1691683072.2250373-UTR-L-elsbetiae_contig17786:3240..32971691683072.2250373-UTR-L-elsbetiae_contig17786:3240..3297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17786 3241..3297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.889477-CDS-L-elsbetiae_contig17786:2787..32401622815740.889477-CDS-L-elsbetiae_contig17786:2787..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17786 2788..3240 +
1691683072.210545-CDS-L-elsbetiae_contig17786:2787..32401691683072.210545-CDS-L-elsbetiae_contig17786:2787..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17786 2788..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17786.5057.1

>prot_L-elsbetiae_contig17786.5057.1 ID=prot_L-elsbetiae_contig17786.5057.1|Name=mRNA_L-elsbetiae_contig17786.5057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MYIHPPLYSLHERPLSVKYLLPLWYLHPQAFRTHVAGCLPSSMFWPPLLH
IHEVCALGHSVPSAFLHPSYILFQSPRNVYSTFVRVHTVVVVVAFVVVDR
VVLWIPGYGSFLSKYVRTYRPKESRFDRSKMACQRKSSLSLLSLKPRRLG
*
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mRNA from alignment at L-elsbetiae_contig17786:2567..3297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17786.5057.1 ID=mRNA_L-elsbetiae_contig17786.5057.1|Name=mRNA_L-elsbetiae_contig17786.5057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=731bp|location=Sequence derived from alignment at L-elsbetiae_contig17786:2567..3297+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCAAACGTCGGGTGTTGTTGTACCATATCTAGATGTATGTACATACT
GCATCTAGACTACATGGCACGTCGGCCTACGTTTGTGTGTGGAATCTATG
TATCTAGATCCAAACAAGGCATTGTATGTATATACGTACATGTGTACATA
CTGCATTATGTGTACATACTACTGTATCTATATCTAGACTCTACCACACG
CTGTATGTACAACAACAATAGATGTACATACATCCTCCCTTGTATTCGTT
ACATGAACGGCCTTTGTCCGTCAAGTACTTATTACCCTTGTGGTATCTGC
ACCCACAAGCTTTTCGTACGCACGTGGCTGGCTGTCTTCCTTCCTCGATG
TTTTGGCCGCCATTACTACACATACATGAAGTTTGTGCACTCGGACATTC
AGTACCCTCTGCCTTCCTCCACCCATCCTATATCTTGTTCCAATCTCCCA
GAAACGTATACAGCACATTTGTGAGGGTACACACAGTAGTAGTAGTAGTG
GCATTCGTTGTAGTCGATCGGGTGGTTTTGTGGATACCTGGATATGGGTC
TTTCCTGTCAAAGTACGTACGCACATACAGACCTAAAGAGTCTCGGTTTG
ACAGGTCCAAGATGGCATGTCAACGCAAGAGCTCACTCTCTCTTCTAAGC
TTAAAGCCGAGACGACTCGGTTGAGCTTGGCTAACCTCGCCACATATCAC
GAAAGGAAATAAGCCACAGCCCATCGTTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17786:2567..3297+

>mRNA_L-elsbetiae_contig17786.5057.1 ID=mRNA_L-elsbetiae_contig17786.5057.1|Name=mRNA_L-elsbetiae_contig17786.5057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig17786:2567..3297+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATACATCCTCCCTTGTATTCGTTACATGAACGGCCTTTGTCCGT
CAAGTACTTATTACCCTTGTGGTATCTGCACCCACAAGCTTTTCGTACGC
ACGTGGCTGGCTGTCTTCCTTCCTCGATGTTTTGGCCGCCATTACTACAC
ATACATGAAGTTTGTGCACTCGGACATTCAGTACCCTCTGCCTTCCTCCA
CCCATCCTATATCTTGTTCCAATCTCCCAGAAACGTATACAGCACATTTG
TGAGGGTACACACAGTAGTAGTAGTAGTGGCATTCGTTGTAGTCGATCGG
GTGGTTTTGTGGATACCTGGATATGGGTCTTTCCTGTCAAAGTACGTACG
CACATACAGACCTAAAGAGTCTCGGTTTGACAGGTCCAAGATGGCATGTC
AACGCAAGAGCTCACTCTCTCTTCTAAGCTTAAAGCCGAGACGACTCGGT
TGAATGTACATACATCCTCCCTTGTATTCGTTACATGAACGGCCTTTGTC
CGTCAAGTACTTATTACCCTTGTGGTATCTGCACCCACAAGCTTTTCGTA
CGCACGTGGCTGGCTGTCTTCCTTCCTCGATGTTTTGGCCGCCATTACTA
CACATACATGAAGTTTGTGCACTCGGACATTCAGTACCCTCTGCCTTCCT
CCACCCATCCTATATCTTGTTCCAATCTCCCAGAAACGTATACAGCACAT
TTGTGAGGGTACACACAGTAGTAGTAGTAGTGGCATTCGTTGTAGTCGAT
CGGGTGGTTTTGTGGATACCTGGATATGGGTCTTTCCTGTCAAAGTACGT
ACGCACATACAGACCTAAAGAGTCTCGGTTTGACAGGTCCAAGATGGCAT
GTCAACGCAAGAGCTCACTCTCTCTTCTAAGCTTAAAGCCGAGACGACTC
GGTTGA
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