mRNA_L-elsbetiae_contig1778.5054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1778.5054.1
Unique NamemRNA_L-elsbetiae_contig1778.5054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1778.5054.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.440e-55
Identity = 99/130 (76.15%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:    1 WVVQPDAGNLPSAGEVGYERELVVPRLLERKRVDDLAESMKDGRLVRQKTAMLRARDEGVVSEVEIHVEGGTQDRRFTDEIYRRGLTPDALDAALRQSEEHGFKIVHHRNFMEFSAYLADETVALQRQFD 390
            WVVQPDAG  P+AGEVGYERE VVPRLLERKRVDDLAESMKDGRLVRQK AMLRA+ EGV +EVE+HVEG T D RF DEIYRRGLTP+ LD ALRQ+E  GFK+V H +F  FSAYLAD T +LQ QF+
Sbjct:  603 WVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFASFSAYLADATQSLQIQFE 732
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BLAST of mRNA_L-elsbetiae_contig1778.5054.1 vs. uniprot
Match: D7FIK5_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK5_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.580e-32
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  118 MKDGRLVRQKTAMLRARDEGVVSEVEIHVEGGTQDRRFTDEIYRRGLTPDALDAALRQSEEHGFKIVHHRNFMEFSAYLADETVALQRQFD 390
            MKDGRLVRQK AMLRA+ +GV +EVE+HVEG T D RF DEIYRRGLTP+ LD ALRQ+E  GFK+V H +F  FSAYLAD T +LQRQF+
Sbjct:    1 MKDGRLVRQKKAMLRAKSDGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFAAFSAYLADATQSLQRQFE 91
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BLAST of mRNA_L-elsbetiae_contig1778.5054.1 vs. uniprot
Match: UPI0010FBA1F9 (crossover junction endonuclease MUS81 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0010FBA1F9)

HSP 1 Score: 52.0 bits (123), Expect = 4.190e-5
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   55 ERELVVPRLLERKRVDDLAESMKDGRLVRQKTAMLRARDEGVVSEVEIHVEGGTQDRRFTDEIYRRGLTPDALDAALRQSEEHGFKIVHHRNFMEFSAYLADETVALQRQFDE 393
            ++ELV+P ++ERKR+DDLA S+KDGR   QK  + ++    VV  +E  +  GT +           LT   L AA   + + GF I H RN  +   YLA  T  L + F +
Sbjct:  257 KQELVLPYIVERKRIDDLASSIKDGRYHEQKFRLKQSGIPNVVYMIE-KLPNGTMNTSIP-------LTT-LLQAATNSAVQDGFTIRHTRNHRDSMLYLATFTKILIKLFKD 360
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BLAST of mRNA_L-elsbetiae_contig1778.5054.1 vs. uniprot
Match: A0A6P4J586_DROKI (crossover junction endonuclease MUS81 n=2 Tax=montium subgroup TaxID=32352 RepID=A0A6P4J586_DROKI)

HSP 1 Score: 51.2 bits (121), Expect = 7.600e-5
Identity = 42/134 (31.34%), Postives = 68/134 (50.75%), Query Frame = 1 
Query:    1 WVVQPDAGNLPSAGEVGYERELVVPRLLERKRVDDLAESMKDGRLVRQKTAMLRARDEGVVSEVEIHVEGGTQDRRFTDEIYRRGLTPDALDAALRQSE-EHGFKIVHHRNFMEFSAYLADETVALQRQFDEGT 399
            W+ +  AGN           ELV+P ++ERKR+DDLA S++DGR   QK  + ++  + V+  VE        D    +++   GL  D+L  AL  +  ++G ++V   N     AYLA  + +L + F + T
Sbjct:  197 WIAKDPAGN-----------ELVLPYIVERKRMDDLASSIRDGRFHEQKHRLKQSGLKHVIYLVE--------DYGDNEQL---GLPLDSLQQALANARVQNGVQVVRTENHFRSMAYLASMSRSLAQIFGQKT 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1778.5054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KF35_9PHAE1.440e-5576.15ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIK5_ECTSI1.580e-3270.33ERCC4 domain containing protein n=1 Tax=Ectocarpus... [more]
UPI0010FBA1F94.190e-536.28crossover junction endonuclease MUS81 n=1 Tax=Diac... [more]
A0A6P4J586_DROKI7.600e-531.34crossover junction endonuclease MUS81 n=2 Tax=mont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1778contigL-elsbetiae_contig1778:13682..16373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size401
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1778.5054.1prot_L-elsbetiae_contig1778.5054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1778 13682..16372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.7081454-CDS-L-elsbetiae_contig1778:13681..137261622815740.7081454-CDS-L-elsbetiae_contig1778:13681..13726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 13682..13726 +
1691683072.0867488-CDS-L-elsbetiae_contig1778:13681..137261691683072.0867488-CDS-L-elsbetiae_contig1778:13681..13726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 13682..13726 +
1622815740.7188337-CDS-L-elsbetiae_contig1778:14869..149521622815740.7188337-CDS-L-elsbetiae_contig1778:14869..14952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 14870..14952 +
1691683072.103819-CDS-L-elsbetiae_contig1778:14869..149521691683072.103819-CDS-L-elsbetiae_contig1778:14869..14952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 14870..14952 +
1622815740.7287025-CDS-L-elsbetiae_contig1778:15831..160151622815740.7287025-CDS-L-elsbetiae_contig1778:15831..16015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 15832..16015 +
1691683072.1148276-CDS-L-elsbetiae_contig1778:15831..160151691683072.1148276-CDS-L-elsbetiae_contig1778:15831..16015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 15832..16015 +
1622815740.7409708-CDS-L-elsbetiae_contig1778:16285..163721622815740.7409708-CDS-L-elsbetiae_contig1778:16285..16372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 16286..16372 +
1691683072.128628-CDS-L-elsbetiae_contig1778:16285..163721691683072.128628-CDS-L-elsbetiae_contig1778:16285..16372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 16286..16372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1778.5054.1

>prot_L-elsbetiae_contig1778.5054.1 ID=prot_L-elsbetiae_contig1778.5054.1|Name=mRNA_L-elsbetiae_contig1778.5054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
WVVQPDAGNLPSAGEVGYERELVVPRLLERKRVDDLAESMKDGRLVRQKT
AMLRARDEGVVSEVEIHVEGGTQDRRFTDEIYRRGLTPDALDAALRQSEE
HGFKIVHHRNFMEFSAYLADETVALQRQFDEGT
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mRNA from alignment at L-elsbetiae_contig1778:13682..16373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1778.5054.1 ID=mRNA_L-elsbetiae_contig1778.5054.1|Name=mRNA_L-elsbetiae_contig1778.5054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2692bp|location=Sequence derived from alignment at L-elsbetiae_contig1778:13682..16373+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGTGGTGCAGCCGGACGCCGGGAACCTGCCCTCGGCGGGGGAGGTGCG
TCTTGGCGCCTGATGTGGACTTTTCTCTTCTTCTTGACATTTATTTCCAG
TGCCCGATGGGCATTCTTGCCACGAGGGCATCTTGCCAGAGTGCTGTACC
GTGGTCACACAGAAGGGTTCCTTTCCCGACGCCCCCACTCCCCCCTTCTG
CGGTGCTTGCCTAAGTTTTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTT
CTCTCGTCGACGGTGAGGTCGAAGTTTCTGTATTATATGTACATACTTCT
ACATACACACGCCAAGCGCTATCTACCCACTTACAGGGACGAAAGCAAGA
GAAAAAACCCACTTTTTGAGAGAAAAAGTCGCTTCCGCCGGGAATCGAAC
CCGCGACCTACCTCCTAGAAGGATACATACCGTAGGTGACACAAGATACC
ACACCCCCTGGACCGAACTTTAGAGCTCCATTACTCCGTAACGAAGAAGG
TGCCAGCACCAAGCAAAACATGTTCGGACGGCCCTCGGCTAGATCTTTCC
ATTACCACCTCTTTCGGCGCTGGCACTCTTCTTGCTGAGGAGGAATCGAG
CTTTGAAAGTATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATA
TCGTAGCGGTGGGCTTTCCGGCCGGCCTGAGATATGGGAGAGAAGAAAGA
AACCGAAAGACAGGATGGATGGTGTGCGGTGTCGCAAAGGAGCAGAGAAA
GAAGAGTGCCCGGTCTGTAGACGGCGCATTCGAGATGCGTCCACTTGATT
GGTTGCTCTCAAGTCACTGCCGCCTGATGAGCGCGCGCCATGCCGGCATA
AATGGTCTCTGTGCGCTGTTTTTGAAGTAATACAAAATTAAAACTCAAAT
GTATTTTTGTAATTTTCACTATTTACTACTCCCCGTATATATATGTGTAC
ACTTACTTGTGTACATACCAGGCACAAAAAGGCGATGCAAACTCTTGTGG
CGAACCAGTGGTGATCCTGTTCTGGTTGCTTTTGCTTCTCCGCAACACAC
TTAGCAAGGCTGCCCCTGACCAAGACGATATGAATATGTAGGTACATGCA
CCTGTTGCTAGCCCCCCAGGATGCCCAGCTTCGCTGACATGTTGACGGCG
GCGCGCCCTCCTCCGTCCTTTCGTGCTCGTGTTCGCAGGTGGGCTACGAG
AGGGAGCTCGTCGTCCCGCGGCTGCTCGAGAGGAAGCGCGTCGACGACCT
CGCGGAGTCCATGAAGGACGGGTAAAGAAAGGGCCTGTTTCAGGGCTTAG
TTAGTCTCCCGGGAGGATGGGCTGCTCGCCCTCGATCGTGGAGCGAGCGC
TTTAGCCTGCAGCAGTCGCCCGCGCAGACAATCGAACCTAACATCTTTCC
CCCTCCCGAGGTTCATAGACTTCCTGCAGCAGGGCCCCCAGTTCTGGAAA
GTGGGTGTGGGGGATTTTTCACTCTATTTCCTAGATAATTACCCCCCCCC
CGGTGCCCCCACAGCTCTTCTTAAAAATTGGGGGCTCTGTTGCAGGAATC
CTGTAATAAGACCGGTTTTTATGGGAGCAGAAAGTTTATTTTGAGAAAAG
TTGCTTTTTTCGCATTGTTGGGCACTTCTCATCGCCGAGAGCTCGGAATC
GTGCCTGCGCACCTCGAGAACAATTGAAGCTCTCGTCCAGAGGTTTCTAG
ATCTCCTGCGCATTCTGGCAGACTTCACGTTTGATTTTTGTCGAGGAGCA
AGATATCGCAAGATCGTGCCAACGTTGCAACAAAATAGCCTGTTCGCGCA
AAAGTTTGCAAACTTTTCGCCCGAAAATGCTTTTCTGGCGAAAAGTTGTC
AAAACGTTGCCTCTCTTGCTCCTCGACGAAAAATCAAACTTGAAGTCTGC
CAGAATGGGCAGGAGATCAAGAAACCCCTGGACAAGAGCTTCAATTGTTC
TCGAGGTGCGCAGGCACGATTCCGAACTCTTGGCGATGAAAAGTGCCCAA
CAATGCGAAAAAAGCAACTTTTCTCGAAATAAACTTTCTGCTCCCATAAA
AACCGGTGTAAGAGTATATATCCATACATTTTTTGGTCGGACACGGTTTT
CATGTGTTTTTTTATTGGTGCGCACCTTTTTTTCCCTTGCTGACCTGCAG
ACGCCTGGTTCGCCAGAAGACGGCCATGCTTCGCGCAAGGGATGAAGGCG
TGGTTTCCGAGGTGGAGATACACGTGGAAGGGGGCACGCAAGACCGGCGT
TTCACGGACGAGATATATCGGCGAGGTTTGACTCCCGACGCCCTCGACGC
CGCCTTGCGCCAGTCGGAAGAGCACGGCTTCAAGGTGCGTCGTCGTCGTC
GTTGTTGTTGATACTGTTGTTATTGTTGCTGCTGTTTTGTTGTTGTTGTT
GTTGTTGTGATGTCGTTGTTGCTGTCATTGTTGTTGCCGGTCGAGCTTTT
TCCTGGCCGTGTGTCTCAGGTTGGCCTGTTCCCTGTCTTAAACGCTGCGG
ATCTGAAGCACACGCTCAACTGATACCTCCTCTCTCCCCCCCCCCCGCCC
CCCCCGCCGCACCCCGCGCCCCCCACGGGCGCCTTCACCTGCCGTCTACA
TAAGATCGTGCACCACCGCAACTTCATGGAGTTCAGCGCCTACCTCGCGG
ACGAGACCGTGGCCCTCCAGCGGCAGTTCGACGAGGGAACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1778:13682..16373+

>mRNA_L-elsbetiae_contig1778.5054.1 ID=mRNA_L-elsbetiae_contig1778.5054.1|Name=mRNA_L-elsbetiae_contig1778.5054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig1778:13682..16373+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGTGGTGCAGCCGGACGCCGGGAACCTGCCCTCGGCGGGGGAGTGGGT
GGTGCAGCCGGACGCCGGGAACCTGCCCTCGGCGGGGGAGGTGGGCTACG
AGAGGGAGCTCGTCGTCCCGCGGCTGCTCGAGAGGAAGCGCGTCGACGAC
CTCGCGGAGTCCATGAAGGACGGGTGGGCTACGAGAGGGAGCTCGTCGTC
CCGCGGCTGCTCGAGAGGAAGCGCGTCGACGACCTCGCGGAGTCCATGAA
GGACGGACGCCTGGTTCGCCAGAAGACGGCCATGCTTCGCGCAAGGGATG
AAGGCGTGGTTTCCGAGGTGGAGATACACGTGGAAGGGGGCACGCAAGAC
CGGCGTTTCACGGACGAGATATATCGGCGAGGTTTGACTCCCGACGCCCT
CGACGCCGCCTTGCGCCAGTCGGAAGAGCACGGCTTCAAGACGCCTGGTT
CGCCAGAAGACGGCCATGCTTCGCGCAAGGGATGAAGGCGTGGTTTCCGA
GGTGGAGATACACGTGGAAGGGGGCACGCAAGACCGGCGTTTCACGGACG
AGATATATCGGCGAGGTTTGACTCCCGACGCCCTCGACGCCGCCTTGCGC
CAGTCGGAAGAGCACGGCTTCAAGATCGTGCACCACCGCAACTTCATGGA
GTTCAGCGCCTACCTCGCGGACGAGACCGTGGCCCTCCAGCGGCAGTTCG
ACGAGGGAACCATCGTGCACCACCGCAACTTCATGGAGTTCAGCGCCTAC
CTCGCGGACGAGACCGTGGCCCTCCAGCGGCAGTTCGACGAGGGAACC
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