mRNA_L-elsbetiae_contig1778.5053.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1778.5053.1
Unique NamemRNA_L-elsbetiae_contig1778.5053.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1778.5053.1 vs. uniprot
Match: D7FIK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK4_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.420e-47
Identity = 106/155 (68.39%), Postives = 123/155 (79.35%), Query Frame = 1 
Query:   52 GKIKASWYRRLLGEALLAAEIDRVEATQGVGVSDGLTAPWRKEFAKNAASVYALTINGQYVAEKLEMALASXXXXXXXXXXXXXXXXXXXXSPILNRTSYASCSLRDGGXXXXTAASRHTGNSPLAPARAHGAAKPGVRLLVDNREKRGATGNSQ 516
            GKIKA WYRRLLGEALL  E+ RVE  +G   ++GLTA WRKEFAKNA ++Y+LT NG+++A +LE A+      XXXXXXXXXXX     SPILNR+SYASCS RDG XXXXTAAS H G+SPLAP RA+GAAKPGVRLL+DNRE+RG T NSQ
Sbjct:  333 GKIKAGWYRRLLGEALLKVELHRVEKWKGPDAANGLTALWRKEFAKNAKTIYSLTPNGEWMATRLERAIGEGPGSXXXXXXXXXXXTA---SPILNRSSYASCSERDGXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNRERRGVTSNSQ 484
[Close]
BLAST of mRNA_L-elsbetiae_contig1778.5053.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.370e-20
Identity = 92/304 (30.26%), Postives = 108/304 (35.53%), Query Frame = 1 
Query:   52 GKIKASWYRRLLGEALLAAEIDRVEATQGVGVSDGLTAPWRKEFAKNAASVYALTINGQYVAEKLEMALA---------------------------------------------------SXXXXXXXXXXXXXXXXXXXXSPILNR--------------------------------------------------------------------------------------------------TSYASCSLRDGGXXXXTAASRHTGNSPLAPARAHGAAKPGVRLLVDNREKRGATGNSQ 516
            GKIKA WYRRLLGEALL  E+ RVE  +G  V++GLTA WRKEF KNA ++Y+LT NG+++A +LE A+                                                    S                    S +L R                                                                                                    YASCS RDG XXXXTAAS   G+SPLAP RA+GAAKPGVRLL+DNREKRG T NSQ
Sbjct:  273 GKIKAGWYRRLLGEALLKVELHRVEKWKGPDVANGLTALWRKEFVKNAKTIYSLTPNGEWMATRLERAIGEGPGSGASSGNVNATTFDLAPLQWWDGAVCRVFAGPGYVSEGMNQKLAIILSFAGEGGDRGVGAKCISLETWSLLLGRGPLSDWGMHIRSSDCPKTCSNCHAVVKSRAEAHQYQESYGNFVFCTWRGGGGGRPWSDRRKPVRPSDPKKTRSDCDRSLPPYSCHRPVNITDDKDNDNDRYASCSERDGXXXXXTAASTRNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQ 576
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1778.5053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK4_ECTSI4.420e-4768.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF35_9PHAE2.370e-2030.26ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1778contigL-elsbetiae_contig1778:12082..13008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-27_000090.1
Exons2
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.657779-CDS-L-elsbetiae_contig1778:12081..122821622815740.657779-CDS-L-elsbetiae_contig1778:12081..12282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 12082..12282 +
1691683072.0626252-CDS-L-elsbetiae_contig1778:12081..122821691683072.0626252-CDS-L-elsbetiae_contig1778:12081..12282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 12082..12282 +
1622815740.6747706-CDS-L-elsbetiae_contig1778:12693..130081622815740.6747706-CDS-L-elsbetiae_contig1778:12693..13008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 12694..13008 +
1691683072.0734298-CDS-L-elsbetiae_contig1778:12693..130081691683072.0734298-CDS-L-elsbetiae_contig1778:12693..13008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1778 12694..13008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1778.5053.1prot_L-elsbetiae_contig1778.5053.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1778 12082..13008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1778.5053.1

>prot_L-elsbetiae_contig1778.5053.1 ID=prot_L-elsbetiae_contig1778.5053.1|Name=mRNA_L-elsbetiae_contig1778.5053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
PHSSSASPSKTGPTSGTGKIKASWYRRLLGEALLAAEIDRVEATQGVGVS
DGLTAPWRKEFAKNAASVYALTINGQYVAEKLEMALASAEGGGRGQGASA
AATATATASPILNRTSYASCSLRDGGGGGGTAASRHTGNSPLAPARAHGA
AKPGVRLLVDNREKRGATGNSQ
back to top

mRNA from alignment at L-elsbetiae_contig1778:12082..13008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1778.5053.1 ID=mRNA_L-elsbetiae_contig1778.5053.1|Name=mRNA_L-elsbetiae_contig1778.5053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=927bp|location=Sequence derived from alignment at L-elsbetiae_contig1778:12082..13008+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACTCTTCCTCCGCCTCGCCTTCCAAGACCGGGCCCACCAGCGGCAC
CGGCAAGATCAAGGCTAGCTGGTACCGCCGGCTCCTGGGAGAGGCCTTGC
TTGCGGCGGAGATAGACCGGGTGGAGGCGACGCAAGGGGTGGGGGTGTCC
GACGGACTGACGGCGCCGTGGCGCAAGGAGTTCGCCAAGAATGCCGCCAG
TGTGAGTGGAGGGGTGTGGAACGGTTAGGCTTGGATGTTCGAAATAATAC
GCACCCGGGCGGGGGGGGGGGGCTATTTTGTGTTTTTACGTTTCTTTTGT
GTGTGTGTGTGTGTGTGTGTTTCTTGTTGCATCTGATTCTTGCGGTTGTC
CTCTTTGCCTCTGTTGCCGTTTTGGTGATCGCCGCTGCTTCAAAAATTCT
CAAACTGCGTATCGTTTTCCCGTCATTTTAGAGGAATACATTCACTCGAC
GCACTCGACTTCAAAACGGCGCCCAACGGGTAAAAAAGCGGACGCAGATC
GAAAACGCACAGAAGGCCGGAGGAGGGGGGGGGGCAGGGTAACGACCATC
GGCAGCCTTGCATCCCGAACCGAAGCTTGTGTCCTGTCCTCCCACCGCCC
CGGCCTACACAGGTGTACGCGCTCACGATAAACGGACAGTACGTGGCGGA
AAAGCTGGAGATGGCTTTGGCGTCGGCGGAGGGCGGCGGCAGAGGCCAGG
GGGCGTCGGCGGCCGCGACGGCCACCGCCACCGCCAGCCCCATCCTCAAC
CGCACCTCGTACGCGAGCTGCTCCTTGAGGGACGGCGGGGGCGGCGGCGG
CACGGCGGCTTCTAGGCACACGGGGAACTCCCCCCTTGCGCCGGCGAGGG
CCCACGGTGCCGCTAAGCCCGGGGTGCGGCTGCTGGTGGACAATAGGGAG
AAGCGCGGAGCCACGGGAAACAGTCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1778:12082..13008+

>mRNA_L-elsbetiae_contig1778.5053.1 ID=mRNA_L-elsbetiae_contig1778.5053.1|Name=mRNA_L-elsbetiae_contig1778.5053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig1778:12082..13008+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACTCTTCCTCCGCCTCGCCTTCCAAGACCGGGCCCACCAGCGGCAC
CGGCAAGATCAAGGCTAGCTGGTACCGCCGGCTCCTGGGAGAGGCCTTGC
TTGCGGCGGAGATAGACCGGGTGGAGGCGACGCAAGGGGTGGGGGTGTCC
GACGGACTGACGGCGCCGTGGCGCAAGGAGTTCGCCAAGAATGCCGCCAG
TCCGCACTCTTCCTCCGCCTCGCCTTCCAAGACCGGGCCCACCAGCGGCA
CCGGCAAGATCAAGGCTAGCTGGTACCGCCGGCTCCTGGGAGAGGCCTTG
CTTGCGGCGGAGATAGACCGGGTGGAGGCGACGCAAGGGGTGGGGGTGTC
CGACGGACTGACGGCGCCGTGGCGCAAGGAGTTCGCCAAGAATGCCGCCA
GTGTGTACGCGCTCACGATAAACGGACAGTACGTGGCGGAAAAGCTGGAG
ATGGCTTTGGCGTCGGCGGAGGGCGGCGGCAGAGGCCAGGGGGCGTCGGC
GGCCGCGACGGCCACCGCCACCGCCAGCCCCATCCTCAACCGCACCTCGT
ACGCGAGCTGCTCCTTGAGGGACGGCGGGGGCGGCGGCGGCACGGCGGCT
TCTAGGCACACGGGGAACTCCCCCCTTGCGCCGGCGAGGGCCCACGGTGC
CGCTAAGCCCGGGGTGCGGCTGCTGGTGGACAATAGGGAGAAGCGCGGAG
CCACGGGAAACAGTCAGGTGTACGCGCTCACGATAAACGGACAGTACGTG
GCGGAAAAGCTGGAGATGGCTTTGGCGTCGGCGGAGGGCGGCGGCAGAGG
CCAGGGGGCGTCGGCGGCCGCGACGGCCACCGCCACCGCCAGCCCCATCC
TCAACCGCACCTCGTACGCGAGCTGCTCCTTGAGGGACGGCGGGGGCGGC
GGCGGCACGGCGGCTTCTAGGCACACGGGGAACTCCCCCCTTGCGCCGGC
GAGGGCCCACGGTGCCGCTAAGCCCGGGGTGCGGCTGCTGGTGGACAATA
GGGAGAAGCGCGGAGCCACGGGAAACAGTCAG
back to top