mRNA_L-elsbetiae_contig17765.5050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17765.5050.1
Unique NamemRNA_L-elsbetiae_contig17765.5050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17765.5050.1 vs. uniprot
Match: D8LMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 6.050e-23
Identity = 66/121 (54.55%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 QSQELRVEMQQLKAKNHGLNTQMDALGADHERLAALLDAAEKDKDSMNAEATELRKVISDLEREKDDAITEKEAKVAEWQALSTSTEEIRAEAARLEAQNLKLGDELDRLAPAASPAAGKK 363
            +SQELRVE+QQLKAKNHGLNTQMDAL ADHERLA+LLD AEKDK+SM  EA ELRKV++DL                                        KLGDELDRLAP+ASPA  K+
Sbjct:  104 ESQELRVEIQQLKAKNHGLNTQMDALAADHERLASLLDTAEKDKESMGTEAAELRKVLADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKLGDELDRLAPSASPAKDKE 224
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BLAST of mRNA_L-elsbetiae_contig17765.5050.1 vs. uniprot
Match: A0A6H5JRF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.850e-20
Identity = 64/124 (51.61%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 QSQELRVEMQQLKAKNHGLNTQMDALGADHERLAALLDAAEK---DKDSMNAEATELRKVISDLEREKDDAITEKEAKVAEWQALSTSTEEIRAEAARLEAQNLKLGDELDRLAPAASPAAGKK 363
            +SQELRVE+QQLKAKNHGLNTQMDAL ADHERLA+LLD AEK   DK+SM  EA ELRKV++                                        N KLGDELDRLAP+ASP+  K+
Sbjct:  104 ESQELRVEIQQLKAKNHGLNTQMDALAADHERLASLLDTAEKAFRDKESMGTEAAELRKVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHKLGDELDRLAPSASPSKDKE 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17765.5050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMT9_ECTSI6.050e-2354.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF0_9PHAE5.850e-2051.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17765contigL-elsbetiae_contig17765:466..3199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17765.5050.1prot_L-elsbetiae_contig17765.5050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17765 490..3199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.256996-UTR-L-elsbetiae_contig17765:465..4891622815740.256996-UTR-L-elsbetiae_contig17765:465..489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17765 466..489 +
1691683071.7891104-UTR-L-elsbetiae_contig17765:465..4891691683071.7891104-UTR-L-elsbetiae_contig17765:465..489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17765 466..489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.2670758-CDS-L-elsbetiae_contig17765:489..5911622815740.2670758-CDS-L-elsbetiae_contig17765:489..591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 490..591 +
1691683071.799907-CDS-L-elsbetiae_contig17765:489..5911691683071.799907-CDS-L-elsbetiae_contig17765:489..591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 490..591 +
1622815740.276654-CDS-L-elsbetiae_contig17765:1795..18881622815740.276654-CDS-L-elsbetiae_contig17765:1795..1888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 1796..1888 +
1691683071.8078108-CDS-L-elsbetiae_contig17765:1795..18881691683071.8078108-CDS-L-elsbetiae_contig17765:1795..1888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 1796..1888 +
1622815740.2860656-CDS-L-elsbetiae_contig17765:3010..31991622815740.2860656-CDS-L-elsbetiae_contig17765:3010..3199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 3011..3199 +
1691683071.8160038-CDS-L-elsbetiae_contig17765:3010..31991691683071.8160038-CDS-L-elsbetiae_contig17765:3010..3199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17765 3011..3199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17765.5050.1

>prot_L-elsbetiae_contig17765.5050.1 ID=prot_L-elsbetiae_contig17765.5050.1|Name=mRNA_L-elsbetiae_contig17765.5050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MQQLKAKNHGLNTQMDALGADHERLAALLDAAEKDKDSMNAEATELRKVI
SDLEREKDDAITEKEAKVAEWQALSTSTEEIRAEAARLEAQNLKLGDELD
RLAPAASPAAGKKAAAAAAELAAALKA*
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mRNA from alignment at L-elsbetiae_contig17765:466..3199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17765.5050.1 ID=mRNA_L-elsbetiae_contig17765.5050.1|Name=mRNA_L-elsbetiae_contig17765.5050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2734bp|location=Sequence derived from alignment at L-elsbetiae_contig17765:466..3199+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTCCCAGGAGCTGCGGGTGGAGATGCAGCAGCTCAAGGCAAAGAACCA
CGGGTTGAATACGCAGATGGACGCTCTCGGGGCCGACCACGAAAGGCTGG
CGGCTCTCTTGGACGCGGCGGAAAAGGTGCGTGCGCACTTTGTTGTGTGT
TTGTGTTGATAGGGTGGGGCGGTCGTTTTCGCGTTTTTGCGCCCCCCCCC
CCTAAACACAGTAGTAGTCAGTATCACTTGACGCCGACCTCTGGGCTTTT
CATTCCGTCTGCGTGTTCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGT
ACTACACCTTGCGGTGTACTTAGAGGTACTACACTTTGCGGTGCGTTTGT
CTGTACAACTAGAACCAACCGGGGTCACACAGGAGGAGGTTCGGTATTGT
ATGGTAATGATGCGGGACCCGATAGAACACGGATCGCGTGGTACGGTTTC
TCCCGTGGTGGCGTTTGCCGGGGGGGGGGGGGGGGGCGGAAGCCCCCAAA
GNNNNNNNNNGGGGGGGGGCGGGGGCGGGGGGCCAGGGGGTGGGGGGGTG
GCGTGGTGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGACCGAAG
ACACCCAAAGGACGCGTCGAGGGGGACCGGAGCGGGCCGGGGCGGTAGGT
TTTGCTAAACGTGCACCCCAACGCGTGTGCGCTCTTTTCTTGATCTCTAC
GTCGTCTCACCTACGTGCTCGATCGAACTCTTGGGGTGCGTTTTAAGGTC
TCGCCGCCGACTCTTACCTATCCTACAGCCGAAAAAGTAGCGCGGGACAT
GTCGGGTGCAGGGCTTCAACCGGACAAGCTTCCAAAGACAATCCGGGGGG
ACACAATACGAGGGTTTTTAACTTGGTGTTTTTATCCGGGTATAGGTCCC
ATACATAGGTACGATACAAAACCCCTTTTGAATTTTGAAAGCTATTTATG
AATATGTTTTTTTTTTTTGCGGTTCGGGTGCTCACACGCGTCACACACCC
AAAACCTCGTTTGTTTTGTGTTTCTTTCGCTCCTTCCGGCGTCTCGTTTT
TTTCCCGTGGGTCTCGCCACCCGCGCATCTCGTTCCCTTCCTTGTTCCTC
CCCCATCCTCTCTCTCCTCCCCTTCTCTCCTCCCCTCTCCTCTCCTCTCC
TCTCCTCGCACGCTGTCCACGCCTCCACCTACGCATCCCGCCCACCCGCC
CGCCTGCCTGTCTGCCTGCCTGCCTGCCTGCCTGTGTGCCTGCCTGTGTG
CCTGCCTGCCACGTTTTTGCGGATCATCAGGACAAAGATTCCATGAACGC
CGAGGCTACGGAGCTGAGGAAAGTTATTTCCGATCTCGAGCGGGAAAAGG
ACGACGCCATCACCGAGAAAGAGGTACGTACGTACGTACGTACATGCGTC
CGCACGTGGTACGTACGTGAGTAGTAGTAGTAGTACGTTCGTGAGCTTGG
AGACCGCCCGATCGAGATGGAATTTCCCTTGCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTGCCCTCCTCCCCTCCTGATGGGAGCTGTGTC
CGCGCACGACGAGGCACAACAGTCGTCAGTATGTATTTATGTTTGTATGT
ATGTATGTTTGTGTCCCCTAAGTCCGTGTTGCCTTGGGTTCCGCCCACCC
CCGGCACGGCGGTGTTATCTTCGGTTGGTGTTTTTTGTACATGTTTCGAC
AATTTCGAGGTTAGTGTTATTTCTTTCTTTATTTCTTTACTTGAAGCATT
TATGTATGTTGTTTCCGGGGCGGGCGGGTTCGGGTAGATAGATCGTGGCG
GTGCCTTTTCAGACTTGTCGAGTGCTTCGTCCGTGCGATGGCGGCGTCAA
AAGGCAGAAGGTATAGGTATGCCTCTTCGTCGTTTCATTATGTTCATGTC
TACTGCTGTTGAGGGAAGTCTTGCATAGATAGGGGCTCTGCTACTCTGCG
GCAGCTCTCGGACGTCTCGCATCTCAGGTCGGGCGTGAGAACAATAGGAC
CGCCAAGAATTCCTGTCTACATTCCACATATGTAATATACCATGAGACAG
GAGTTCCGTAACCCTAACCCCAAACCGACCCCCCATTAGCCGTCTCCATA
CTTTATCCCATACGATGTATTCCATACTTTTATCCCATTAGCCGTTTCCA
TACTTTATCCCATATGATTTCCATACTTTATCCCATTAGCCGTCTCCATA
CTTTATCCCATATGATGTATTCCATACTTTATCCCATTAGCCGTCTCCAA
ACTTTATCCCAGTAAAACCTGCTGCTACTGGAACAATCAACAAAACACGC
AAGCAAGAAGTTGAAAGTATGCACGCATCTACTACATACTCCGGAGTAGG
TTATATCAAAGTCTGATTATTTTTGCAGCATTGTCACCAATAACCGTTGC
TCCGCGATCCTGTCGTGTTTCTCTCGTTTTGACATATCCCCCCCCCCCCC
CTCGCCCTACCCCCGCAAAAATGGAACACTCCAATAATTCCCCAGGCGAA
GGTAGCAGAGTGGCAAGCGCTCTCGACGAGCACCGAGGAGATCAGGGCGG
AGGCAGCCCGCCTGGAGGCGCAGAACCTCAAGCTGGGGGACGAGCTGGAT
CGGCTGGCGCCGGCGGCGTCGCCCGCGGCTGGCAAGAAGGCGGCCGCTGC
CGCGGCGGAGCTAGCCGCCGCTCTCAAGGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17765:466..3199+

>mRNA_L-elsbetiae_contig17765.5050.1 ID=mRNA_L-elsbetiae_contig17765.5050.1|Name=mRNA_L-elsbetiae_contig17765.5050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig17765:466..3199+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGCTCAAGGCAAAGAACCACGGGTTGAATACGCAGATGGACGC
TCTCGGGGCCGACCACGAAAGGCTGGCGGCTCTCTTGGACGCGGCGGAAA
AGATGCAGCAGCTCAAGGCAAAGAACCACGGGTTGAATACGCAGATGGAC
GCTCTCGGGGCCGACCACGAAAGGCTGGCGGCTCTCTTGGACGCGGCGGA
AAAGGACAAAGATTCCATGAACGCCGAGGCTACGGAGCTGAGGAAAGTTA
TTTCCGATCTCGAGCGGGAAAAGGACGACGCCATCACCGAGAAAGAGGAC
AAAGATTCCATGAACGCCGAGGCTACGGAGCTGAGGAAAGTTATTTCCGA
TCTCGAGCGGGAAAAGGACGACGCCATCACCGAGAAAGAGGCGAAGGTAG
CAGAGTGGCAAGCGCTCTCGACGAGCACCGAGGAGATCAGGGCGGAGGCA
GCCCGCCTGGAGGCGCAGAACCTCAAGCTGGGGGACGAGCTGGATCGGCT
GGCGCCGGCGGCGTCGCCCGCGGCTGGCAAGAAGGCGGCCGCTGCCGCGG
CGGAGCTAGCCGCCGCTCTCAAGGCGTGAGCGAAGGTAGCAGAGTGGCAA
GCGCTCTCGACGAGCACCGAGGAGATCAGGGCGGAGGCAGCCCGCCTGGA
GGCGCAGAACCTCAAGCTGGGGGACGAGCTGGATCGGCTGGCGCCGGCGG
CGTCGCCCGCGGCTGGCAAGAAGGCGGCCGCTGCCGCGGCGGAGCTAGCC
GCCGCTCTCAAGGCGTGA
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