mRNA_L-elsbetiae_contig17764.5049.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17764.5049.1
Unique NamemRNA_L-elsbetiae_contig17764.5049.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5KH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH24_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 9.440e-53
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            LAL+CG+AGEEDLC+LL V  LY W    +L+APTT+EG+ PN + FE IGGFDFKE+ RFE PHFLQLL+RLELPD  E+ RGGYG +R+PAD+ALA+TLWRL AP+TL+RDRLF
Sbjct:   23 LALICGVAGEEDLCMLLCVCCLYEWRRHHELLAPTTLEGLFPNLNCFEAIGGFDFKEVFRFENPHFLQLLRRLELPDSFEVSRGGYGVTRVPADVALALTLWRLSAPTTLVRDRLF 138          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5JNG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG9_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.350e-45
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   22 AGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITL-WRLGAPSTLIRDRLF 348
            AGEEDLC+L  V  LY W  + +L+APTT+EG+ PN +FFE IGGFDFKE+ RFEKPHFLQLL+RLELPD  E+ RGGYG +R+PAD+ALA+TL WRL AP+TL+RDR F
Sbjct:   30 AGEEDLCMLWCVCCLYEWRRYHELLAPTTLEGVFPNLNFFEAIGGFDFKEVFRFEKPHFLQLLRRLELPDSSEVSRGGYGVTRVPADVALALTLLWRLSAPTTLVRDRSF 139          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: D7G529_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G529_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.410e-44
Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            +A++  + GEEDL L++  Y+L   +L+ QLVAPTT+ G+ P+FDFFEVIGGFDFKEL RFEKPHFL+LL  LELP+  E++RGGYG S++PA LAL +TLWRL  P+TL+RDRLF
Sbjct:    1 MAVMLAMMGEEDLFLVMGAYALQEMALYDQLVAPTTLPGVCPHFDFFEVIGGFDFKELFRFEKPHFLRLLDALELPEYFELHRGGYGVSKVPARLALGVTLWRLACPTTLLRDRLF 116          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5JZ31_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ31_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.610e-42
Identity = 76/116 (65.52%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            +A LC L G EDL ++L  YSL RW +++QLVA TT+EGIR  FD+FE IGGFDFKELLRFEKPHFL LL  L+LP+  E+ R GYG  R+PA LA A+TLWRL AP TLIRDR+F
Sbjct:   23 IAALCALVGGEDLFIVLGTYSLLRWQMYKQLVAATTIEGIR--FDYFERIGGFDFKELLRFEKPHFLDLLGALQLPNTFEVSRWGYGVQRVPARLAFAVTLWRLAAPRTLIRDRIF 136          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5KR86_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR86_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.230e-42
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    4 ALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            A+LC LAGEEDL L+L++  L +   + +L+ PT +EG+ P ++ F  IGG DFKEL RFEKPHF QLL  LELP  IEIYRGGYG +R+PAD+ALA+T+WRL  P+TLIRDRLF
Sbjct:   24 AVLCALAGEEDLFLVLSLLGLVQLEAYEELITPTILEGVYPTYNLFYAIGGMDFKELFRFEKPHFRQLLYELELPKCIEIYRGGYGVTRVPADIALAVTIWRLACPTTLIRDRLF 138          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5L0G5_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G5_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.320e-42
Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            LA+LC LAGEED+ L++  + L +   + +L+APT +EG+ P ++FF+ IGG DFKEL RFEKPHF +LL  L+LP+ IEI+RGG+G SR+P DLALA+T+WRL  P+TLIRDRLF
Sbjct:   23 LAVLCALAGEEDMFLVMATFGLAKLEAYEELIAPTILEGVCPMYNFFDAIGGLDFKELFRFEKPHFRELLHELQLPEEIEIHRGGFGVSRVPIDLALAVTIWRLACPTTLIRDRLF 138          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5L856_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L856_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.890e-41
Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            L L C + GEED+CL+L    L +W  + +LV PT ++G+R  +DFFEV+GGFDFKEL RFEKPHFL LL  LELP  +EI+RGGY   RIPA L LA+TLWRL AP+TL+RDRLF
Sbjct:   23 LCLACSVLGEEDMCLVLGALWLLKWRAYEELVRPTVLDGVR--YDFFEVLGGFDFKELFRFEKPHFLLLLAALELPAELEIWRGGYSCQRIPARLGLAVTLWRLAAPTTLLRDRLF 136          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5KL05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL05_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.090e-39
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   43 LLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            +LL V  LY W  + +L+ PTT+EG+ PN +FFE IGGFDFKE+ RFEKPHFLQLL+RLELPD  E+ R GYG +R+PA +ALA+TLWRL AP+TL+RDRLF
Sbjct:    1 MLLCVCCLYEWRRYHELLGPTTLEGVFPNLNFFEAIGGFDFKEVFRFEKPHFLQLLRRLELPDSFEVSRQGYGVTRVPAYVALALTLWRLSAPTTLVRDRLF 102          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5KAA1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA1_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.350e-38
Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            LA++C   GE+DL L+L  Y + +W  + +LVAPT + G+R  +DF EV+GGFDFKE+ RFEK HF QLL  LELP  +EI RGG+G  RIPA LALA+TLWR  AP+TL+RDRLF
Sbjct:   23 LAVVCAALGEDDLFLVLGAYWMLKWRAYLELVAPTQLGGVR--YDFMEVLGGFDFKEVFRFEKSHFRQLLAALELPPELEIRRGGFGTQRIPASLALAVTLWRFAAPTTLLRDRLF 136          
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Match: A0A6H5JXV8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.790e-36
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    4 ALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVIGGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAITLWRLGAPSTLIRDRLF 348
            ALLC + GEE++ L+L V ++ R   + QLV PTT  G+ P  +F EVIGGFDF+EL RFEKP F+ LL+  ELP  +EI+RGG+G SR+P ++AL +TLWRL  P+TL+RDRLF
Sbjct:   24 ALLCAVVGEEEVFLVLAVVAMQRLRAYEQLVEPTTHAGMYPTHNFMEVIGGFDFRELFRFEKPDFILLLEVQELPAELEIHRGGFGTSRVPMEIALGLTLWRLACPTTLLRDRLF 138          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17764.5049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH24_9PHAE9.440e-5368.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNG9_9PHAE1.350e-4568.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G529_ECTSI3.410e-4462.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZ31_9PHAE1.610e-4265.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KR86_9PHAE2.230e-4261.74DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0G5_9PHAE3.320e-4259.48DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5L856_9PHAE4.890e-4162.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KL05_9PHAE3.090e-3965.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAA1_9PHAE6.350e-3859.48DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXV8_9PHAE3.790e-3656.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17764contigL-elsbetiae_contig17764:1739..2467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue4.8e-36
Seed eggNOG ortholog2880.D7G529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_005010.1
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.2112994-CDS-L-elsbetiae_contig17764:1738..18381622815740.2112994-CDS-L-elsbetiae_contig17764:1738..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17764 1739..1838 -
1691683071.7652347-CDS-L-elsbetiae_contig17764:1738..18381691683071.7652347-CDS-L-elsbetiae_contig17764:1738..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17764 1739..1838 -
1622815740.2221742-CDS-L-elsbetiae_contig17764:2219..24671622815740.2221742-CDS-L-elsbetiae_contig17764:2219..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17764 2220..2467 -
1691683071.7794664-CDS-L-elsbetiae_contig17764:2219..24671691683071.7794664-CDS-L-elsbetiae_contig17764:2219..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17764 2220..2467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17764.5049.1prot_L-elsbetiae_contig17764.5049.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17764 1739..2467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17764.5049.1

>prot_L-elsbetiae_contig17764.5049.1 ID=prot_L-elsbetiae_contig17764.5049.1|Name=mRNA_L-elsbetiae_contig17764.5049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
LALLCGLAGEEDLCLLLTVYSLYRWSLFRQLVAPTTMEGIRPNFDFFEVI
GGFDFKELLRFEKPHFLQLLQRLELPDVIEIYRGGYGHSRIPADLALAIT
LWRLGAPSTLIRDRLF
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mRNA from alignment at L-elsbetiae_contig17764:1739..2467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17764.5049.1 ID=mRNA_L-elsbetiae_contig17764.5049.1|Name=mRNA_L-elsbetiae_contig17764.5049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=729bp|location=Sequence derived from alignment at L-elsbetiae_contig17764:1739..2467- (Laminarionema elsbetiae ELsaHSoW15)
CTGGCTCTGCTTTGCGGTCTCGCGGGGGAAGAAGACCTGTGCCTACTGCT TACTGTGTACAGCCTCTACCGTTGGAGCTTGTTTCGACAGCTGGTTGCAC CTACCACAATGGAAGGGATACGTCCCAACTTCGACTTCTTCGAAGTCATC GGCGGTTTCGACTTTAAGGAGCTGCTGAGGTTTGAGAAGCCCCATTTCTT GCAGCTGCTCCAGCGCCTGGAGCTCCCAGATGTCATCGAAATATACAGGT GAGCGAGTCGAAGTGGACAGCGCGGTACTCGCCCTTTGTCGTGTGTGTAG ATAGCCCTCGGCAGCAACACCACTCGTTACCCCGGCAAACTCAAGACTGT TGTATACCCTATGAAGCAGCAAGCTAAATCGCTATAACATTTGTCAGCTA GGAGAACGGAAGTATATATACCTAGCACACCGAACAATCCCCGAATCAAC ACACCACTGTTTCAACCATGGCTGGTGTACTCATGAAAAAACAGTCACGT CTGTACTTTAGTAGGCTAGGAGTACAGAACTATCCAGCACGGAGGTTGCT GGTGCATATGCGCTACACGTTGCAAATCACCCGACCGCGGTTGAACCCTT TCGCCGCCTCCGCTCGCCGTTTTGTACAGGGGGGGGTATGGGCATAGCCG GATTCCGGCGGACCTTGCTTTGGCCATCACTCTGTGGAGACTGGGGGCGC CCTCCACCTTGATTCGGGATAGACTATTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17764:1739..2467-

>mRNA_L-elsbetiae_contig17764.5049.1 ID=mRNA_L-elsbetiae_contig17764.5049.1|Name=mRNA_L-elsbetiae_contig17764.5049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig17764:1739..2467- (Laminarionema elsbetiae ELsaHSoW15)
CTGGCTCTGCTTTGCGGTCTCGCGGGGGAAGAAGACCTGTGCCTACTGCT
TACTGTGTACAGCCTCTACCGTTGGAGCTTGTTTCGACAGCTGGTTGCAC
CTACCACAATGGAAGGGATACGTCCCAACTTCGACTTCTTCGAAGTCATC
GGCGGTTTCGACTTTAAGGAGCTGCTGAGGTTTGAGAAGCCCCATTTCTT
GCAGCTGCTCCAGCGCCTGGAGCTCCCAGATGTCATCGAAATATACAGCT
GGCTCTGCTTTGCGGTCTCGCGGGGGAAGAAGACCTGTGCCTACTGCTTA
CTGTGTACAGCCTCTACCGTTGGAGCTTGTTTCGACAGCTGGTTGCACCT
ACCACAATGGAAGGGATACGTCCCAACTTCGACTTCTTCGAAGTCATCGG
CGGTTTCGACTTTAAGGAGCTGCTGAGGTTTGAGAAGCCCCATTTCTTGC
AGCTGCTCCAGCGCCTGGAGCTCCCAGATGTCATCGAAATATACAGGGGG
GGGTATGGGCATAGCCGGATTCCGGCGGACCTTGCTTTGGCCATCACTCT
GTGGAGACTGGGGGCGCCCTCCACCTTGATTCGGGATAGACTATTTGGGG
GGGTATGGGCATAGCCGGATTCCGGCGGACCTTGCTTTGGCCATCACTCT
GTGGAGACTGGGGGCGCCCTCCACCTTGATTCGGGATAGACTATTT
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