mRNA_L-elsbetiae_contig1774.5042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1774.5042.1
Unique NamemRNA_L-elsbetiae_contig1774.5042.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1774.5042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1774contigL-elsbetiae_contig1774:4009..4350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.7616832-CDS-L-elsbetiae_contig1774:4008..43501622815739.7616832-CDS-L-elsbetiae_contig1774:4008..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1774 4009..4350 +
1691683071.4779599-CDS-L-elsbetiae_contig1774:4008..43501691683071.4779599-CDS-L-elsbetiae_contig1774:4008..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1774 4009..4350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1774.5042.1prot_L-elsbetiae_contig1774.5042.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1774 4009..4350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1774.5042.1

>prot_L-elsbetiae_contig1774.5042.1 ID=prot_L-elsbetiae_contig1774.5042.1|Name=mRNA_L-elsbetiae_contig1774.5042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
AKVSLPLQARVRLPPRSIGRPSHPFSTTYPTHYYSMATIAELRQNNFYQL
SKRRNLVILIGVTLNCPLRHLTIQQGHTIPCSIRVNQATFWLVAWAGSFE
VQVDMACSVWRTNN
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mRNA from alignment at L-elsbetiae_contig1774:4009..4350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1774.5042.1 ID=mRNA_L-elsbetiae_contig1774.5042.1|Name=mRNA_L-elsbetiae_contig1774.5042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig1774:4009..4350+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAAAGTGTCGCTTCCTCTTCAGGCTCGAGTTCGTTTGCCGCCACGAAG
TATTGGCCGTCCGAGCCACCCATTCTCTACAACATACCCTACACACTACT
ACTCCATGGCAACGATCGCTGAGCTGAGGCAGAACAACTTTTATCAACTA
AGCAAGAGAAGGAACCTTGTGATTCTGATTGGAGTCACCTTGAACTGTCC
CCTACGGCATCTTACTATCCAACAGGGCCATACCATACCCTGCTCGATCA
GAGTCAACCAAGCCACCTTCTGGCTTGTTGCGTGGGCCGGCTCTTTCGAG
GTACAGGTAGACATGGCCTGTTCTGTTTGGCGCACGAATAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1774:4009..4350+

>mRNA_L-elsbetiae_contig1774.5042.1 ID=mRNA_L-elsbetiae_contig1774.5042.1|Name=mRNA_L-elsbetiae_contig1774.5042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig1774:4009..4350+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAAAGTGTCGCTTCCTCTTCAGGCTCGAGTTCGTTTGCCGCCACGAAG
TATTGGCCGTCCGAGCCACCCATTCTCTACAACATACCCTACACACTACT
ACTCCATGGCAACGATCGCTGAGCTGAGGCAGAACAACTTTTATCAACTA
AGCAAGAGAAGGAACCTTGTGATTCTGATTGGAGTCACCTTGAACTGTCC
CCTACGGCATCTTACTATCCAACAGGGCCATACCATACCCTGCTCGATCA
GAGTCAACCAAGCCACCTTCTGGCTTGTTGCGTGGGCCGGCTCTTTCGAG
GTACAGGTAGACATGGCCTGTTCTGTTTGGCGCACGAATAATGCCAAAGT
GTCGCTTCCTCTTCAGGCTCGAGTTCGTTTGCCGCCACGAAGTATTGGCC
GTCCGAGCCACCCATTCTCTACAACATACCCTACACACTACTACTCCATG
GCAACGATCGCTGAGCTGAGGCAGAACAACTTTTATCAACTAAGCAAGAG
AAGGAACCTTGTGATTCTGATTGGAGTCACCTTGAACTGTCCCCTACGGC
ATCTTACTATCCAACAGGGCCATACCATACCCTGCTCGATCAGAGTCAAC
CAAGCCACCTTCTGGCTTGTTGCGTGGGCCGGCTCTTTCGAGGTACAGGT
AGACATGGCCTGTTCTGTTTGGCGCACGAATAAT
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