mRNA_L-elsbetiae_contig17734.5041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17734.5041.1
Unique NamemRNA_L-elsbetiae_contig17734.5041.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.220e-23
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   10 VRRLSSSGDFGLVLVHAAAHIQVDPSDVSNDLDPRFTQHFHRSLKVLTQ 156
            VRRLSSSGDFGLVLVHAAAHI VDPSD+SNDLDPRFTQHFHRSLKVLTQ
Sbjct: 2894 VRRLSSSGDFGLVLVHAAAHIHVDPSDMSNDLDPRFTQHFHRSLKVLTQ 2942
[Close]
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.350e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   10 VRRLSSSGDFGLVLVHAAAHIQVDPSDVSNDLDPRFTQHFHRSLKVLTQ 156
            VRRLSSSGDFGLVLVHAAAHI VDPSD++NDLDPRFTQHFHRSLKVLTQ
Sbjct: 6579 VRRLSSSGDFGLVLVHAAAHIHVDPSDMTNDLDPRFTQHFHRSLKVLTQ 6627
[Close]
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Match: A0A7S3GQ97_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ97_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.290e-13
Identity = 28/47 (59.57%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 RLSSSGDFGLVLVHAAAHIQVDPSDVSNDLDPRFTQHFHRSLKVLTQ 156
            RLSSSGDFGL+++HA +HI+V+P+D+SND DP+F   F+++LK+L+Q
Sbjct:   97 RLSSSGDFGLIVIHALSHIKVNPADLSNDADPKFLAEFYKNLKILSQ 143
[Close]
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Match: A0A2E9D1H1_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9D1H1_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 2.190e-11
Identity = 28/47 (59.57%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   16 RLSSSGDFGLVLVHAAAHIQVDPSDVSNDLDPRFTQHFHRSLKVLTQ 156
            RLSSSGDFGLV +HA +HI+V+PSD+S+D +P+FT  F+ +L++L+Q
Sbjct:  516 RLSSSGDFGLVAIHALSHIKVNPSDMSDDSNPQFTAEFYTNLRILSQ 562
[Close]
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Match: A0A835YHE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.300e-8
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   13 RRLSSSGDFGLVLVHAAAHIQVD--PSDVSNDLDPRFTQHFHRSLKVLTQ 156
            RRL  SGDFGLVLVHAAAH+  D  P+ + +D  P FT+ FH +L  L +
Sbjct:   77 RRLGGSGDFGLVLVHAAAHLLSDAAPAHLHDDARPEFTRAFHGALATLAR 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17734.5041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KWQ4_9PHAE9.220e-2395.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR26_ECTSI2.350e-2293.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3GQ97_9STRA4.290e-1359.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2E9D1H1_9GAMM2.190e-1159.57Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
A0A835YHE9_9STRA9.300e-854.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17734contigL-elsbetiae_contig17734:2683..2838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog2880.D8LR26
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.6581004-CDS-L-elsbetiae_contig17734:2682..28381622815739.6581004-CDS-L-elsbetiae_contig17734:2682..2838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17734 2683..2838 -
1691683071.4308243-CDS-L-elsbetiae_contig17734:2682..28381691683071.4308243-CDS-L-elsbetiae_contig17734:2682..2838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17734 2683..2838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17734.5041.1prot_L-elsbetiae_contig17734.5041.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17734 2683..2838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17734.5041.1

>prot_L-elsbetiae_contig17734.5041.1 ID=prot_L-elsbetiae_contig17734.5041.1|Name=mRNA_L-elsbetiae_contig17734.5041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MATVRRLSSSGDFGLVLVHAAAHIQVDPSDVSNDLDPRFTQHFHRSLKVL
TQ
back to top

mRNA from alignment at L-elsbetiae_contig17734:2683..2838-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17734.5041.1 ID=mRNA_L-elsbetiae_contig17734.5041.1|Name=mRNA_L-elsbetiae_contig17734.5041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig17734:2683..2838- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACAGTTCGGCGTCTTTCGAGCAGTGGAGACTTCGGGTTGGTGCT
CGTACACGCGGCGGCTCACATCCAAGTCGACCCATCGGACGTGTCGAATG
ATCTCGATCCGCGGTTCACGCAGCACTTCCACCGCTCGCTCAAGGTCTTG
ACACAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17734:2683..2838-

>mRNA_L-elsbetiae_contig17734.5041.1 ID=mRNA_L-elsbetiae_contig17734.5041.1|Name=mRNA_L-elsbetiae_contig17734.5041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig17734:2683..2838- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACAGTTCGGCGTCTTTCGAGCAGTGGAGACTTCGGGTTGGTGCT
CGTACACGCGGCGGCTCACATCCAAGTCGACCCATCGGACGTGTCGAATG
ATCTCGATCCGCGGTTCACGCAGCACTTCCACCGCTCGCTCAAGGTCTTG
ACACAAATGGCGACAGTTCGGCGTCTTTCGAGCAGTGGAGACTTCGGGTT
GGTGCTCGTACACGCGGCGGCTCACATCCAAGTCGACCCATCGGACGTGT
CGAATGATCTCGATCCGCGGTTCACGCAGCACTTCCACCGCTCGCTCAAG
GTCTTGACACAA
back to top