mRNA_L-elsbetiae_contig17732.5040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17732.5040.1
Unique NamemRNA_L-elsbetiae_contig17732.5040.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17732.5040.1 vs. uniprot
Match: D7FZI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.240e-25
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 3 
Query:   27 EQRQFMEYMQVLFTNTAVVHSFLGEMDPGFVVCLDFDRLGDANQAFKVAKVLAPNETVAEMLARSFVGAMEGHVSRDGVELLPYLSEDMVVERLQRKLDSFESVYC 344
            E+R F+EYM+VLFT+ AV+ SFL E+ P F+VC D+DRLGD  QA  +A  +APN+ +A ++  S V       S      LP+   D VV RLQRKLD+FE +YC
Sbjct:   10 EERLFLEYMRVLFTDIAVLQSFLSEIGPEFIVCHDWDRLGDKEQASTIAHFIAPNDEIAGLVESSLVQTARKKSSNTNP--LPFEDADAVVSRLQRKLDAFEPLYC 113
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BLAST of mRNA_L-elsbetiae_contig17732.5040.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.880e-22
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:   27 EQRQFMEYMQVLFTNTAVVHSFLGEMDPGFVVCLDFDRLGDANQAFKVAKVLAPNETVAEMLARSFVGAMEGHVSRDGVELLPYLSEDMVVERLQRKLDSFESVYC 344
            ++R F++YM+VLFT+ AV+HSFLGE+ P FVVC D+DRLGD  QA  +A  ++PN+ +A ++  S V   +     D    LP+     VV RLQRKLD+FE +YC
Sbjct:  304 QERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPNDEIASLVESSLVQTAKKSSRTDP---LPFEDAYAVVLRLQRKLDAFEHLYC 406
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17732.5040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI1_ECTSI2.240e-2549.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH94_9PHAE1.880e-2248.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17732contigL-elsbetiae_contig17732:2541..3140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17732.5040.1prot_L-elsbetiae_contig17732.5040.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17732 2582..3068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.5961428-UTR-L-elsbetiae_contig17732:2540..25811622815739.5961428-UTR-L-elsbetiae_contig17732:2540..2581Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17732 2541..2581 +
1691683071.3912294-UTR-L-elsbetiae_contig17732:2540..25811691683071.3912294-UTR-L-elsbetiae_contig17732:2540..2581Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17732 2541..2581 +
1622815739.6267252-UTR-L-elsbetiae_contig17732:3068..31401622815739.6267252-UTR-L-elsbetiae_contig17732:3068..3140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17732 3069..3140 +
1691683071.4197986-UTR-L-elsbetiae_contig17732:3068..31401691683071.4197986-UTR-L-elsbetiae_contig17732:3068..3140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17732 3069..3140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.606596-CDS-L-elsbetiae_contig17732:2581..25961622815739.606596-CDS-L-elsbetiae_contig17732:2581..2596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17732 2582..2596 +
1691683071.3996394-CDS-L-elsbetiae_contig17732:2581..25961691683071.3996394-CDS-L-elsbetiae_contig17732:2581..2596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17732 2582..2596 +
1622815739.6165764-CDS-L-elsbetiae_contig17732:2774..30681622815739.6165764-CDS-L-elsbetiae_contig17732:2774..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17732 2775..3068 +
1691683071.41071-CDS-L-elsbetiae_contig17732:2774..30681691683071.41071-CDS-L-elsbetiae_contig17732:2774..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17732 2775..3068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17732.5040.1

>prot_L-elsbetiae_contig17732.5040.1 ID=prot_L-elsbetiae_contig17732.5040.1|Name=mRNA_L-elsbetiae_contig17732.5040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MEYMQVLFTNTAVVHSFLGEMDPGFVVCLDFDRLGDANQAFKVAKVLAPN
ETVAEMLARSFVGAMEGHVSRDGVELLPYLSEDMVVERLQRKLDSFESVY
CK*
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mRNA from alignment at L-elsbetiae_contig17732:2541..3140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17732.5040.1 ID=mRNA_L-elsbetiae_contig17732.5040.1|Name=mRNA_L-elsbetiae_contig17732.5040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig17732:2541..3140+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAGGTCTATGCCGACAGCAAAACTGAACAACGCCAGTTCATGGAGTAC
ATGCAGGTTCGTGGCAATTTCGGTTGAAAGACTATACGTAACATGATGAA
TGTCATTGCTATCTATCGTGGAAAGGTGTTTCTATTCGGTAATATCGACA
AAAAATATCCAAGTTCATGTTTGACGCCACGAAGACGACATGCCCACACC
CCAAAGCTCGTCGTTTTTTTCATGCTTTGAGCAGGTACTCTTTACCAACA
CGGCTGTTGTGCATTCCTTCCTTGGAGAGATGGATCCGGGGTTCGTCGTC
TGCCTCGACTTTGACCGTCTGGGAGATGCGAATCAAGCATTCAAAGTAGC
CAAAGTGCTAGCCCCGAACGAGACGGTTGCCGAAATGCTGGCACGTTCGT
TTGTGGGGGCGATGGAAGGACATGTATCTCGAGATGGGGTAGAATTGCTG
CCATATTTATCTGAAGACATGGTAGTCGAGCGCCTTCAGCGCAAACTTGA
CTCGTTTGAATCAGTCTACTGCAAGTGAGTGATTTTTTAGCTGCACTAAG
ACCTTCGGGTCCATTTTCTTTTTCTTTTCTTTCTTTTTTTCGGTATTAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17732:2541..3140+

>mRNA_L-elsbetiae_contig17732.5040.1 ID=mRNA_L-elsbetiae_contig17732.5040.1|Name=mRNA_L-elsbetiae_contig17732.5040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig17732:2541..3140+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTACATGCAGATGGAGTACATGCAGGTACTCTTTACCAACACGGC
TGTTGTGCATTCCTTCCTTGGAGAGATGGATCCGGGGTTCGTCGTCTGCC
TCGACTTTGACCGTCTGGGAGATGCGAATCAAGCATTCAAAGTAGCCAAA
GTGCTAGCCCCGAACGAGACGGTTGCCGAAATGCTGGCACGTTCGTTTGT
GGGGGCGATGGAAGGACATGTATCTCGAGATGGGGTAGAATTGCTGCCAT
ATTTATCTGAAGACATGGTAGTCGAGCGCCTTCAGCGCAAACTTGACTCG
TTTGAATCAGTCTACTGCAAGTGAGTACTCTTTACCAACACGGCTGTTGT
GCATTCCTTCCTTGGAGAGATGGATCCGGGGTTCGTCGTCTGCCTCGACT
TTGACCGTCTGGGAGATGCGAATCAAGCATTCAAAGTAGCCAAAGTGCTA
GCCCCGAACGAGACGGTTGCCGAAATGCTGGCACGTTCGTTTGTGGGGGC
GATGGAAGGACATGTATCTCGAGATGGGGTAGAATTGCTGCCATATTTAT
CTGAAGACATGGTAGTCGAGCGCCTTCAGCGCAAACTTGACTCGTTTGAA
TCAGTCTACTGCAAGTGA
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