mRNA_L-elsbetiae_contig1773.5039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1773.5039.1
Unique NamemRNA_L-elsbetiae_contig1773.5039.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1773.5039.1 vs. uniprot
Match: A0A6H5JM25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM25_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.650e-40
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 1 
Query:  196 MGGDKPANGADDGSSPHRLSSFVGERSYLIDPCDSREDPVVCAALLDANAYIDLDDVLEAEIEFIKGSGVSIKVGELRRRVQLVLADFRGVLLALFSEYCKRKPQHEYVLAKLAVPPPTNPTAL 567
            M  +KPA+GAD G SPHRL SFVGE  +L+DPCDSREDP+VCAAL+ AN YIDL+DV EAE EF K +GVSIKV +LR RVQLVLADFR VLL +F++Y +R    E  L +LAV P TNP  L
Sbjct:    1 MAREKPASGADVGWSPHRLPSFVGEHGHLVDPCDSREDPIVCAALVKANVYIDLEDVFEAEREFWKNTGVSIKVEDLRHRVQLVLADFRDVLLTMFTDYSER----ESGLERLAVAPATNPAKL 120
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BLAST of mRNA_L-elsbetiae_contig1773.5039.1 vs. uniprot
Match: D8LDA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA4_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.010e-40
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 1 
Query:  196 MGGDKPANGADDGSSPHRLSSFVGERSYLIDPCDSREDPVVCAALLDANAYIDLDDVLEAEIEFIKGSGVSIKVGELRRRVQLVLADFRGVLLALFSEYCKRKPQHEYVLAKLAVPPPTNPTAL 567
            M  +KPA+GAD G SPHRL SFVGE   L+DPCDSREDP+VCAAL+ AN Y+DL+DVLEAE EF K +GVSI+V +LR RVQLVLADFR VLL +F++Y +R    E  L +LAV P TNP  L
Sbjct:    1 MAREKPASGADVGWSPHRLPSFVGEHGRLVDPCDSREDPIVCAALVKANVYVDLEDVLEAEREFWKNTGVSIRVEDLRHRVQLVLADFRDVLLTMFTDYSER----ESGLERLAVAPATNPATL 120
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1773.5039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM25_9PHAE1.650e-4065.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDA4_ECTSI5.010e-4064.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1773contigL-elsbetiae_contig1773:19360..23634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue6e-09
Seed eggNOG ortholog44056.XP_009041909.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size709
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1773.5039.1prot_L-elsbetiae_contig1773.5039.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1773 19360..23634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.4996006-CDS-L-elsbetiae_contig1773:19359..194161622815739.4996006-CDS-L-elsbetiae_contig1773:19359..19416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 19360..19416 +
1691683071.32968-CDS-L-elsbetiae_contig1773:19359..194161691683071.32968-CDS-L-elsbetiae_contig1773:19359..19416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 19360..19416 +
1622815739.5149791-CDS-L-elsbetiae_contig1773:19834..199441622815739.5149791-CDS-L-elsbetiae_contig1773:19834..19944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 19835..19944 +
1691683071.3437977-CDS-L-elsbetiae_contig1773:19834..199441691683071.3437977-CDS-L-elsbetiae_contig1773:19834..19944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 19835..19944 +
1622815739.5253646-CDS-L-elsbetiae_contig1773:20608..207231622815739.5253646-CDS-L-elsbetiae_contig1773:20608..20723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 20609..20723 +
1691683071.351819-CDS-L-elsbetiae_contig1773:20608..207231691683071.351819-CDS-L-elsbetiae_contig1773:20608..20723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 20609..20723 +
1622815739.5360203-CDS-L-elsbetiae_contig1773:21237..213481622815739.5360203-CDS-L-elsbetiae_contig1773:21237..21348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 21238..21348 +
1691683071.3604634-CDS-L-elsbetiae_contig1773:21237..213481691683071.3604634-CDS-L-elsbetiae_contig1773:21237..21348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 21238..21348 +
1622815739.5509164-CDS-L-elsbetiae_contig1773:22170..222751622815739.5509164-CDS-L-elsbetiae_contig1773:22170..22275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 22171..22275 +
1691683071.3712215-CDS-L-elsbetiae_contig1773:22170..222751691683071.3712215-CDS-L-elsbetiae_contig1773:22170..22275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 22171..22275 +
1622815739.5641048-CDS-L-elsbetiae_contig1773:23424..236341622815739.5641048-CDS-L-elsbetiae_contig1773:23424..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 23425..23634 +
1691683071.3800385-CDS-L-elsbetiae_contig1773:23424..236341691683071.3800385-CDS-L-elsbetiae_contig1773:23424..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 23425..23634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1773.5039.1

>prot_L-elsbetiae_contig1773.5039.1 ID=prot_L-elsbetiae_contig1773.5039.1|Name=mRNA_L-elsbetiae_contig1773.5039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
DPAQPLVFLQKGQALLRMQEHAGASRTFLGGLRIAPGHTDLQRLFYRSLR
GVRESSQRYVPGWRWMGGDKPANGADDGSSPHRLSSFVGERSYLIDPCDS
REDPVVCAALLDANAYIDLDDVLEAEIEFIKGSGVSIKVGELRRRVQLVL
ADFRGVLLALFSEYCKRKPQHEYVLAKLAVPPPTNPTALADEGGEFTEAD
NKSQARTSDESREDGSIVSSNNASNINSDGTIADEK
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mRNA from alignment at L-elsbetiae_contig1773:19360..23634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1773.5039.1 ID=mRNA_L-elsbetiae_contig1773.5039.1|Name=mRNA_L-elsbetiae_contig1773.5039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4275bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:19360..23634+ (Laminarionema elsbetiae ELsaHSoW15)
GATCCCGCTCAGCCGCTGGTGTTCCTGCAGAAGGGGCAGGCCCTGCTCAG
GATGCAGGTCGGAGGAGACGCTGGTCGATAGCACCTTTTTCGCGCTGCAA
GCAGTTTCGGAGCGCTTGAAGGGTTGTGCCCTGGTGCACCTGAACGGACA
GCACCACACGCGCTGCTGTTCCCGTAGATGGGTGGAGACTTTAATAACGT
GCCTTTGAGGAGTGTTTGTGGGTCTTGTCCAGTATGTGCGATGGCTGCCG
TCGTTCAACGTGCGGTATTGCTCCCATGCTTCCATGCGCCATGCACCGGC
GTTATGCCTGAATGTGTTCAGAACAGACCAAAACCTCCGCCGAAAATAAA
ATGACAGCAAAGGTATGCCTGACGGCGCTTTATTAAAAATGAAACAAATG
CTGTGTGTGTGTGTGACGGTCTGAATTTGAATGCGCGCTACTCGCACCTC
ACTCCCAAAAACGCAACCATCACAGGAGCACGCCGGGGCTAGTCGGACCT
TCCTAGGCGGGTTGAGGATAGCCCCAGGGCACACTGATCTCCAACGGTTG
TTCTACCGCAGCCTTCGGGGTGTTCGAGAAAGCAGGTCAGCTGCCATGCG
TATGTGTGGCGTGCGGTACTCCACGATTTAGCTGGCCTTGCTTGTGCTGA
ATGTGCTTGTGTGTCGTTCTATTTTATTGGCTGGCCATCTCGCGGCGTAG
TGGCCTACTTAGTTGAGCGCGATATATCATGGAACCACACTTGAGATGTG
CGAGAGTGCCTTGCCCTGTGGACGCGCCCAACGCAGCAGCAGCAGCTTGT
TGGTGGTGCCATTTACTATTGCACTGTTGAAGTCTTGTTCAGGTACCTTC
TACACCCACACAATAGCCGCCTTGTTTGCCCGGGGGCTTCAAAATTGTTG
AAAAGGCGTCTTCGAACTCGCGCATCACGCTCGTTTCAAGCACCCGCCGC
AAGACTGTATCAGATACACTTTTCCACCCCAAACCCATGGTTTTCTCGTG
GTCATTGTCCTCTACCTGGCGAAACCGTCCGAGGACTTATCTGTCTAGGG
AGACGGGAGTGTGACGGGGAGGCGAGGGGAGAGGGGGAGCGGGCGTAGTC
AGGGGCGTTGCCGGTTACGATTTTGACGCATGTTTCCAACGTGATTGGTC
AGTGGTATCTCGTTGTTTCTTAACCTCCACCGCTGCACTCCCTCCCTCCC
TCCGTATTGCGCAAAACACGCGCAACGGACAACATCCGTATTGTTCCAGT
CAGAGGTACGTGCCGGGGTGGAGGTGGATGGGTGGAGACAAACCTGCAAA
CGGGGCTGACGACGGTTCGAGCCCGCATAGGCTGTCGTCGTTCGTGGGAG
AGCGGAGCTACCTGGTGGGTGCCCGGACGCCCATGCAGCTGTTCTACAAG
TATCGGCAGTTCGATTTTCGTGCCACATGGAAAGTCGTGTGGTGCGCCAT
ACATACCCCCGCAAAGAGTGTCCACGAACTTCCTTGGGTGCTGATCTTCA
CCACGGCACCTCTCTGCCTTCGAGTGGGAGTTAGCGTCGAACGACGACAT
CTACACTTTCGTACATACCCTATCACATGCACACTCAGTATTTGTCAGGC
TCTGCAGTGTTCTCGGCCATCTACAATAAATGCGATAGAGTCTCTTGATG
TTGCATTGCACCTGGAATTAATTAGATAACATGCTTTCACGTTACATACC
ATCCCCATCAAAGTGGGCAGCACTTACGGCATCTTGGTGATGGCCATTTA
GCCGTTTCACCGACAAGGAATATTAATATTTTGCGTAGGTGAGAATCGGT
TTCGCTCTTTGCCCACCAATCCTTGCGCTCCTTTGTGACCGCTGTTTTAT
GTGTTCTGTGTCTTCCGTCGCGGTAAAGATTGATCCGTGCGATTCGCGGG
AAGACCCCGTCGTCTGCGCGGCGCTGCTCGATGCCAACGCCTACATCGAC
CTGGACGACGTTCTCGAGGCGGAAATAGAGTTTATTAAGGTGAAACTTTG
ATCTCGGCCAATGAGAAAAGGAAAAGAGTTCCTCCGAACAAGGGACGAAA
CAGCACTATTTAGTTAGCGTCAGATGCGCATACTTACGCAGACACGGAAT
ATGGCTTCTAAGCGGGCCAGCGCCTCATTTGGGGGTGCGTGTGGTTATGT
ACCATGCGTACTTCCATCACGCGTGAGCAAGACAAGCAATGGTGTCCATA
AATCTCCCAACCGCCTTCTGCGCACACAATGCTCGAACCATGCACACGCA
CCGGGCTGTTACGACGAAATATTAGTCAACCGCTCGCAAAAAAGCATATC
ACCGCATGTGTTCTCTGTGCTTCCTAAGGCACCAAGCCGGAACTGCATGT
CTTGAGAAAAAACATCTCAGACGAAACGGTATGCCGTGATATACACTCTC
CAGGAGGGGGGGGGGGGGAATGCCTGGTCGGCGAAAACCCGACACGGACC
CCTCCCACCTCGTAGGTCGTTCTACAAGCCACAAGGCCCACCAAGTACTC
TTTTTTCTGCCTGTTGTGCGGCTAGCGCGATTATCTCTTTGCATTTATTC
TTCCGAGTTAATAGTACGTACCCTCGGATTATTGATTTGGCGCCAACGAC
CAGTCTACACACCCTCGTTAGGGGCGCGTATGTAGCTTACCTTTTCTATA
TATTTTTCTTCAACGAGGTCGGCGTGCCCTGTTTTGTGACCACGGGTCCC
CCATGTGCGTTTTGGATCAGCGAGCTAATGTAAGAAGCAACAACAACAAC
AAAAACAACTTCCCCGTTTACTAAGGCTTTTCGCATTGCGTTGAATCGTA
AAAATGCTCAGGGCTCTGGCGTGTCTATCAAGGTGGGGGAGTTACGACGC
CGTGTGCAGCTGGTTCTGGCGGATTTCAGGGGCGTCCTCTTGGCACTGTT
CTCGGAGTACTGCAAGGTGTGGTTTGTGGCTGACGCTTAAAATGCTGCTT
TTAAGGTATTGCGGTAGCGGGTGCCAATTTTTCGGCTCCCGTCTCCCCTT
CTTGCTTCAGTACACGCCGTCCACGACAATCTGTTTTCTCAACAGTGCGC
TCCAACTCGAAGTTCGGTTGCGGCCCTCTTCACGGACAAGTCAATAGCCG
GTCGCCCCGGTGGTCTAGTTATTTAGTATCCACGCAACCTTCTAAGAACC
AGGTGATGGCTTCGAGCCCCGGCGAAGCGAGTTTTTTTCTCACATTCGTT
CCTGTAAAATTGAAAGCGATTTCGTGAGTAAATGATATTTCGACTTCATT
GTTGACGAGGGTGCGGAGTGCTGAACCCTCCTCGCGATAAAAACTTCACA
GGCAGGCACCGCAGGGGGGTCCCCCCCCCCCCCCCCCCCCCATGTGGGAC
CCCCCCCGCCGTTGCGCAAAGGGTCAGTGGGGGGGGGGGACGGGGGGGGG
GGCAGGGGCGGGGGGAANNNNNNNNNNTTCCGTTCATTTTTTTCGGGGAG
GGGCGGGGTGGGGACCCCCCCCCCCGAAAAAACCTCCCCGGGGGGCCCCC
CGGGGGGGGCCCCCCCCCCCCCCCCCCTCTTGTGTGACCCCGGTTGGGTC
GTCTAGCTAGTCGTAGTGGAGGAAGGGGACCAGTGGGGCAGACGACGAAT
GAGCCAATAATGGGAGGGAGAAAAAAAAACACAATAGAAGTGCTTGCCGT
CTTTCTTTGTGTGTCCCAAAAGGGCGAGTCTTTTAAAAATAAACAATGAA
TCAAAGATGGAACCTACCCCACATTAGAGCAAGGACTCAATATGGGGTTC
AAACGGTATTCCATCCAGTGACGTGATATTTGGCGAAGCGAGCAGAAAAA
CAACCTAAAATATCAGAAGCGTTCAACATCTTCCCTGCAAAGATTTAAGA
TTTGCGAGGTCGGCCAACAAGTATTTCTGTTTTCCTCTGACACGCTCTCG
ACTACGAGTCGTTCATCGCATACCAAAATGAGTCTGGTTGGGGGTTGCTT
TTGCACTTGCGGAGAAAAAAACAGGCTACACATGCTTGAACTCTGCGAGC
CAAAAAGGTTTCCGGTCAGTCTCGCACATCCTTCTACGCGTCTCGATCGA
TCTCGTCCTTGAAAGCGCAAACCACAGCACGAATACGTTCTGGCGAAGTT
GGCCGTGCCGCCGCCGACCAACCCGACCGCGCTAGCTGACGAAGGCGGCG
AGTTCACCGAGGCAGACAACAAGTCGCAGGCCCGCACTTCTGACGAGTCC
AGGGAAGACGGCAGCATCGTCAGCAGCAACAATGCCAGCAACATCAACAG
CGATGGTACCATCGCCGATGAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1773:19360..23634+

>mRNA_L-elsbetiae_contig1773.5039.1 ID=mRNA_L-elsbetiae_contig1773.5039.1|Name=mRNA_L-elsbetiae_contig1773.5039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:19360..23634+ (Laminarionema elsbetiae ELsaHSoW15)
GATCCCGCTCAGCCGCTGGTGTTCCTGCAGAAGGGGCAGGCCCTGCTCAG
GATGCAGGATCCCGCTCAGCCGCTGGTGTTCCTGCAGAAGGGGCAGGCCC
TGCTCAGGATGCAGGAGCACGCCGGGGCTAGTCGGACCTTCCTAGGCGGG
TTGAGGATAGCCCCAGGGCACACTGATCTCCAACGGTTGTTCTACCGCAG
CCTTCGGGGTGTTCGAGAAAGCAGGAGCACGCCGGGGCTAGTCGGACCTT
CCTAGGCGGGTTGAGGATAGCCCCAGGGCACACTGATCTCCAACGGTTGT
TCTACCGCAGCCTTCGGGGTGTTCGAGAAAGCAGTCAGAGGTACGTGCCG
GGGTGGAGGTGGATGGGTGGAGACAAACCTGCAAACGGGGCTGACGACGG
TTCGAGCCCGCATAGGCTGTCGTCGTTCGTGGGAGAGCGGAGCTACCTGT
CAGAGGTACGTGCCGGGGTGGAGGTGGATGGGTGGAGACAAACCTGCAAA
CGGGGCTGACGACGGTTCGAGCCCGCATAGGCTGTCGTCGTTCGTGGGAG
AGCGGAGCTACCTGATTGATCCGTGCGATTCGCGGGAAGACCCCGTCGTC
TGCGCGGCGCTGCTCGATGCCAACGCCTACATCGACCTGGACGACGTTCT
CGAGGCGGAAATAGAGTTTATTAAGATTGATCCGTGCGATTCGCGGGAAG
ACCCCGTCGTCTGCGCGGCGCTGCTCGATGCCAACGCCTACATCGACCTG
GACGACGTTCTCGAGGCGGAAATAGAGTTTATTAAGGGCTCTGGCGTGTC
TATCAAGGTGGGGGAGTTACGACGCCGTGTGCAGCTGGTTCTGGCGGATT
TCAGGGGCGTCCTCTTGGCACTGTTCTCGGAGTACTGCAAGGGCTCTGGC
GTGTCTATCAAGGTGGGGGAGTTACGACGCCGTGTGCAGCTGGTTCTGGC
GGATTTCAGGGGCGTCCTCTTGGCACTGTTCTCGGAGTACTGCAAGCGCA
AACCACAGCACGAATACGTTCTGGCGAAGTTGGCCGTGCCGCCGCCGACC
AACCCGACCGCGCTAGCTGACGAAGGCGGCGAGTTCACCGAGGCAGACAA
CAAGTCGCAGGCCCGCACTTCTGACGAGTCCAGGGAAGACGGCAGCATCG
TCAGCAGCAACAATGCCAGCAACATCAACAGCGATGGTACCATCGCCGAT
GAAAAGCGCAAACCACAGCACGAATACGTTCTGGCGAAGTTGGCCGTGCC
GCCGCCGACCAACCCGACCGCGCTAGCTGACGAAGGCGGCGAGTTCACCG
AGGCAGACAACAAGTCGCAGGCCCGCACTTCTGACGAGTCCAGGGAAGAC
GGCAGCATCGTCAGCAGCAACAATGCCAGCAACATCAACAGCGATGGTAC
CATCGCCGATGAAAAG
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