mRNA_L-elsbetiae_contig1773.5037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1773.5037.1
Unique NamemRNA_L-elsbetiae_contig1773.5037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1773.5037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1773contigL-elsbetiae_contig1773:7119..8576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1458
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1773.5037.1prot_L-elsbetiae_contig1773.5037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1773 7234..8154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.3126497-UTR-L-elsbetiae_contig1773:7118..72331622815739.3126497-UTR-L-elsbetiae_contig1773:7118..7233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1773 7119..7233 +
1691683071.1789362-UTR-L-elsbetiae_contig1773:7118..72331691683071.1789362-UTR-L-elsbetiae_contig1773:7118..7233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1773 7119..7233 +
1622815739.339019-UTR-L-elsbetiae_contig1773:8154..85761622815739.339019-UTR-L-elsbetiae_contig1773:8154..8576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1773 8155..8576 +
1691683071.197814-UTR-L-elsbetiae_contig1773:8154..85761691683071.197814-UTR-L-elsbetiae_contig1773:8154..8576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1773 8155..8576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.3287418-CDS-L-elsbetiae_contig1773:7233..81541622815739.3287418-CDS-L-elsbetiae_contig1773:7233..8154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 7234..8154 +
1691683071.1884468-CDS-L-elsbetiae_contig1773:7233..81541691683071.1884468-CDS-L-elsbetiae_contig1773:7233..8154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 7234..8154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1773.5037.1

>prot_L-elsbetiae_contig1773.5037.1 ID=prot_L-elsbetiae_contig1773.5037.1|Name=mRNA_L-elsbetiae_contig1773.5037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MEAQLRWCWGADIQYSLRQAWCLTRLAETCSLLCRCCGRHASVWRFYPSA
VLHLREANFRTFDFFLCFSAQVSAGEEHEEEEEEDNDDDDAATELDYHDA
GSGNSNNNNNNNNGASSAGNKSSTEEENGDDGDESDEDGDADPETRRFVD
LHTRYRGFLARHLWRSDTADFECPGEGYWEDENDIQLVRDSTAHDLRVAR
QAVFPTRIPHNPLAHKATKAKFEGLRRGYHLCRKVAVSRDGTVYRATDAE
VEAALEAEELTLAGMTDAAKYVRVVRETRRRHKIAREVEAARPARRTTPS
KRRRPR*
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mRNA from alignment at L-elsbetiae_contig1773:7119..8576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1773.5037.1 ID=mRNA_L-elsbetiae_contig1773.5037.1|Name=mRNA_L-elsbetiae_contig1773.5037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:7119..8576+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTATTGGGGCGAGTGCTCCTCTTTTTTCATATGCTTCTTATGTTGTGG
TCTGCCGCGTTTGTTTTCCGCGTTTTGTGGGTCATTTTTGGTCTGAGCCA
GTACGTGCGAGGAGCATGGAAGCACAGCTGCGGTGGTGTTGGGGTGCAGA
CATCCAGTACTCGCTCCGCCAGGCCTGGTGCTTGACAAGACTCGCGGAGA
CGTGCTCTTTGCTCTGCCGCTGCTGTGGTCGACATGCGAGCGTATGGCGT
TTCTATCCTTCAGCAGTTTTACACCTCCGCGAAGCGAATTTCCGAACTTT
TGATTTTTTTTTGTGTTTTTCTGCCCAGGTATCGGCGGGAGAGGAACACG
AAGAGGAGGAGGAAGAGGACAACGATGATGATGATGCCGCCACGGAGCTG
GACTACCACGATGCCGGGAGTGGCAACAGCAACAACAACAACAACAACAA
CAACGGTGCCAGCAGCGCCGGGAACAAAAGCAGCACCGAGGAAGAGAACG
GAGATGACGGAGACGAAAGCGACGAAGACGGCGACGCGGACCCGGAGACC
AGGCGGTTCGTGGACCTGCACACACGGTATCGCGGCTTCCTGGCGCGGCA
CCTCTGGCGGAGCGACACCGCGGACTTCGAGTGCCCGGGGGAAGGGTACT
GGGAAGACGAGAACGACATCCAGCTGGTCCGGGACTCCACCGCCCACGAC
CTGAGGGTCGCCAGGCAGGCGGTGTTCCCCACGCGCATCCCCCACAACCC
CCTCGCGCACAAGGCAACCAAGGCAAAGTTCGAGGGCCTGAGGCGGGGGT
ACCACCTCTGCAGGAAGGTGGCCGTCTCCCGCGACGGGACGGTCTACAGG
GCGACGGACGCGGAGGTAGAGGCGGCCCTCGAGGCGGAGGAGCTCACGCT
CGCCGGCATGACGGACGCCGCCAAGTACGTCAGGGTGGTGCGGGAGACGC
GCCGGCGGCATAAGATCGCCCGGGAGGTGGAGGCTGCTCGCCCGGCTCGC
CGGACCACCCCGTCGAAGCGCAGGCGTCCACGCTAGGCGGACGGGGCGGG
TGTGGGCTTGGTGTTTTGTTTTGGCGGCTTTCTTTGAGACGCGCGGACGC
TATTTACTGCTTGCTGTGTTGCTTTTGGTGGCCTTAAGTATACTCGGGCA
TGGAAAGGGGCGTTCTATTTACACCCGGGCCACGTTTTTGTTTTTTGCTT
CGTTTTTTTCCATTTCCACCATAAATACTTATTGAAAAAGCCAGCGCCCG
AGGGAGGGGGGCACATCGTGTGCCAGACCTCTGATCCGTAGTCACACACA
GAAGGGCCCCTCCCCCCTGAGACCCCCACACTCACCCCTCCGCGGTGCTC
ACCCTCTTTTTTTTTTAACGCGAGACGAGGTCGACAGTAGTCCCTTCCCT
CATTCATGTATGCAGATGTTTCATGTAGTAGCCGATCGATTTTGATATGT
TTGAGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1773:7119..8576+

>mRNA_L-elsbetiae_contig1773.5037.1 ID=mRNA_L-elsbetiae_contig1773.5037.1|Name=mRNA_L-elsbetiae_contig1773.5037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:7119..8576+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCACAGCTGCGGTGGTGTTGGGGTGCAGACATCCAGTACTCGCT
CCGCCAGGCCTGGTGCTTGACAAGACTCGCGGAGACGTGCTCTTTGCTCT
GCCGCTGCTGTGGTCGACATGCGAGCGTATGGCGTTTCTATCCTTCAGCA
GTTTTACACCTCCGCGAAGCGAATTTCCGAACTTTTGATTTTTTTTTGTG
TTTTTCTGCCCAGGTATCGGCGGGAGAGGAACACGAAGAGGAGGAGGAAG
AGGACAACGATGATGATGATGCCGCCACGGAGCTGGACTACCACGATGCC
GGGAGTGGCAACAGCAACAACAACAACAACAACAACAACGGTGCCAGCAG
CGCCGGGAACAAAAGCAGCACCGAGGAAGAGAACGGAGATGACGGAGACG
AAAGCGACGAAGACGGCGACGCGGACCCGGAGACCAGGCGGTTCGTGGAC
CTGCACACACGGTATCGCGGCTTCCTGGCGCGGCACCTCTGGCGGAGCGA
CACCGCGGACTTCGAGTGCCCGGGGGAAGGGTACTGGGAAGACGAGAACG
ACATCCAGCTGGTCCGGGACTCCACCGCCCACGACCTGAGGGTCGCCAGG
CAGGCGGTGTTCCCCACGCGCATCCCCCACAACCCCCTCGCGCACAAGGC
AACCAAGGCAAAGTTCGAGGGCCTGAGGCGGGGGTACCACCTCTGCAGGA
AGGTGGCCGTCTCCCGCGACGGGACGGTCTACAGGGCGACGGACGCGGAG
GTAGAGGCGGCCCTCGAGGCGGAGGAGCTCACGCTCGCCGGCATGACGGA
CGCCGCCAAGTACGTCAGGGTGGTGCGGGAGACGCGCCGGCGGCATAAGA
TCGCCCGGGAGGTGGAGGCTGCTCGCCCGGCTCGCCGGACCACCCCGTCG
AAGCGCAGGCGTCCACGCTAGATGGAAGCACAGCTGCGGTGGTGTTGGGG
TGCAGACATCCAGTACTCGCTCCGCCAGGCCTGGTGCTTGACAAGACTCG
CGGAGACGTGCTCTTTGCTCTGCCGCTGCTGTGGTCGACATGCGAGCGTA
TGGCGTTTCTATCCTTCAGCAGTTTTACACCTCCGCGAAGCGAATTTCCG
AACTTTTGATTTTTTTTTGTGTTTTTCTGCCCAGGTATCGGCGGGAGAGG
AACACGAAGAGGAGGAGGAAGAGGACAACGATGATGATGATGCCGCCACG
GAGCTGGACTACCACGATGCCGGGAGTGGCAACAGCAACAACAACAACAA
CAACAACAACGGTGCCAGCAGCGCCGGGAACAAAAGCAGCACCGAGGAAG
AGAACGGAGATGACGGAGACGAAAGCGACGAAGACGGCGACGCGGACCCG
GAGACCAGGCGGTTCGTGGACCTGCACACACGGTATCGCGGCTTCCTGGC
GCGGCACCTCTGGCGGAGCGACACCGCGGACTTCGAGTGCCCGGGGGAAG
GGTACTGGGAAGACGAGAACGACATCCAGCTGGTCCGGGACTCCACCGCC
CACGACCTGAGGGTCGCCAGGCAGGCGGTGTTCCCCACGCGCATCCCCCA
CAACCCCCTCGCGCACAAGGCAACCAAGGCAAAGTTCGAGGGCCTGAGGC
GGGGGTACCACCTCTGCAGGAAGGTGGCCGTCTCCCGCGACGGGACGGTC
TACAGGGCGACGGACGCGGAGGTAGAGGCGGCCCTCGAGGCGGAGGAGCT
CACGCTCGCCGGCATGACGGACGCCGCCAAGTACGTCAGGGTGGTGCGGG
AGACGCGCCGGCGGCATAAGATCGCCCGGGAGGTGGAGGCTGCTCGCCCG
GCTCGCCGGACCACCCCGTCGAAGCGCAGGCGTCCACGCTAG
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