mRNA_L-elsbetiae_contig1773.5036.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1773.5036.1
Unique NamemRNA_L-elsbetiae_contig1773.5036.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1773.5036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1773contigL-elsbetiae_contig1773:2275..5420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size406
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1773.5036.1prot_L-elsbetiae_contig1773.5036.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1773 2275..5420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.2575696-CDS-L-elsbetiae_contig1773:2274..23901622815739.2575696-CDS-L-elsbetiae_contig1773:2274..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 2275..2390 +
1691683071.1400516-CDS-L-elsbetiae_contig1773:2274..23901691683071.1400516-CDS-L-elsbetiae_contig1773:2274..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 2275..2390 +
1622815739.2689664-CDS-L-elsbetiae_contig1773:4882..51011622815739.2689664-CDS-L-elsbetiae_contig1773:4882..5101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 4883..5101 +
1691683071.151989-CDS-L-elsbetiae_contig1773:4882..51011691683071.151989-CDS-L-elsbetiae_contig1773:4882..5101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 4883..5101 +
1622815739.2788553-CDS-L-elsbetiae_contig1773:5350..54201622815739.2788553-CDS-L-elsbetiae_contig1773:5350..5420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 5351..5420 +
1691683071.1693645-CDS-L-elsbetiae_contig1773:5350..54201691683071.1693645-CDS-L-elsbetiae_contig1773:5350..5420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1773 5351..5420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1773.5036.1

>prot_L-elsbetiae_contig1773.5036.1 ID=prot_L-elsbetiae_contig1773.5036.1|Name=mRNA_L-elsbetiae_contig1773.5036.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
SCISGAKSCSCVCTLLDITRIACARSSWTGPAAGRRICRDRTRQLAWRSS
KCAASMPELSDEERLLLVDRVDELRLNGDQKMILSDKAMNCQRNDADFKK
LKMLGTFWRRYREGLVSYANFSRQVDKACGLPEER
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mRNA from alignment at L-elsbetiae_contig1773:2275..5420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1773.5036.1 ID=mRNA_L-elsbetiae_contig1773.5036.1|Name=mRNA_L-elsbetiae_contig1773.5036.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3146bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:2275..5420+ (Laminarionema elsbetiae ELsaHSoW15)
TCATGTATTTCTGGAGCGAAATCCTGTTCCTGTGTGTGTACCTTGCTTGA
CATCACACGTATCGCCTGCGCGCGTTCGTCGTGGACTGGCCCAGCAGCAG
GAAGGAGAATCTGCAGGTATGATTCGTGAGTAAGCTGCGAACAGCATCCG
CCAAACTAGGCTGCATGAAGTAACAAACACCTCGGCATCGATCCGCGCAG
GCCGTTTGGTAGACTAGATAAATAGGCTTGTAGCAGGAGACATCACATGT
ACATGATATGCAAAGGCTCGACAAACACATGCATTCGCCTTGGTCGGGCG
CAAATGAAAAGTATCCAATGTCCGGTCTAGAACAAAGGAGCTGTCCTTGG
CCCCTATTACCTCTGTATCTACCGCGGATGACACAGAATACCACCCCCCC
TGGACAGATTTTCAAAGCTCGGTTACTCCCCAGCAAGATTAATGCCAGTG
CCGAAATGAAGTGGCGTTGGAAAGATCTAGTGGAGGGCTGTCCGAAAATG
TGTCGTTTGGTGTCCGCACCCTCTTCGCTATGGAGGAATCAAGCTCTGAA
ATCTGCCCAGGGGGGAGGGGTGGTATCCTGTGTGTCCACAGCAGGCAGCA
GTACAACAGTGGGCGCCCGCGAGTAAGAAAAATTCGAGTAAGAAAAAAAG
ACTCAAATTTCCGCGAAAAATAAGAAAATGGCGCTAAGAAACCTACCTCA
ATCTGGGCCACAGCATAAGAAACATCCCAATAAGAAACTGAGCGCAGAAC
AGGCCAAAGTATAAGAAACTCAGTGCATGAGAGAGAGTGTGACAAATAAG
AAACGCCCCCTCCTCCCGGTGCCCACCCCCTACCCCCCACCGCGTGTATT
TGTTGGCGGTGACGGTATGCGTGTGATTGTCTTTATGCGGTCCCCCCCCG
CGGACCGCTTCGTGCTTCCTTGCTTGTGCCACCAAGCACAACGCCCGTGT
GATGGCGCAATCCACCGACTCGATCGACAGCTTGCAGAAGTTGTTGGCCG
TTAGAGATCAGCTGTCGAGCCGCCACATTGAGGACATCAAAAAGCATCTC
CTCAGCAAAAAGACTCTTTTCTTTGAGGCAATTGGCGCGGTGCGGATCTT
TTGGGGATACTGTACGGCACCTTCGCCCAAAACGCGCCTTGCACCACTCT
GTTCGGGGGTTTTTGCGCTTCGTTTCCATGTGCGGATGTGTTCTCCGGGC
CGTGGCGAGAATGTTGTGAGGGAATGATAATATTGATGCCACATGCAACA
ATACGCAACCCCATGGGCAGGTTACGAACCTCATTAGACATGAGGACATG
TAACGGAAGCAGCGTAGGCGCTAGAAAGGTGGCATTACAAAAAAACAAGC
AATATCCTGCAAGGTCCAAAAAAATAAGAAACTGCTTATAAGAAAATGAA
CGACGTAGGCTGGTGTTTCGGCCGAAAATAGGAAATTGAGGCTCGACCCA
TATTTTACGTTTCTTACTTTCGGGCGCCAACTGTAGCGTCCTTCTTGGGT
ATTGTACCGCAACATGCTACAATAGGCACGACTTATTTTCTTGTAACCAA
CCTGTGGACTGTGGCCCACCTCGCGACAACGGCGGACTCCAGCACAGACG
GACAGAAGGGGAGGGGACAACAACAAGAAGGGATGTGTTGGATCAAGAAG
AAAAGGTGTTTGCAGAGCACTCACGGTGGTAGTCTAGTACATGTTGGGTA
ACACCTAAATACACCTACCGTAGGTGACACAAGATACCACACCCCCTGGA
CCGACTTTTAGAGCTCCAGTACTCCGCAACGAAGAAGGTGCCAGCACCAA
ACGACACATTTCCGGACAGCCCTCGACCAGATCTTTCCAGCGCCACCCAT
TTCGGAAGTGGCGCTCTTCTTGTTGGGGAGGAATCGAGCTTTGAAAATAT
GTCTAGGGGGTGTGGTATCTTGTGTCACCTACGGTAATCGGCCCGCTGAT
AAGAAACCCGAAATCGGGCTCAGGCTGACGTTCTGTGTTGGGTTGGGAGC
CGAGGATAGCAATTTCTTGTGCCATGTATGTATGTATAGGATTTAGTGTC
GCACTCGCGGCCCCGGCTGGACACTCGCTACATATCTTAATAATTTGAAA
ATCTCAGGCTGTCAGGCTGGCTTTCTCATTCGGAGCTTTATAGCTTTCTT
ATTGGCGGGCCGGTGCTGCTACTACTGCTGTACAAATAGTATGCAGGAGT
ATATACATGCTTCGGGTCATAGAGTTAGAGTTGAAAACTGCGCGTCCGTC
CATGGTCACGCGAAACGACAGTCATGTGTTGGTGCTCCTCTGTTGAATAA
GTGTTCGTTTACCCCCGAGCTCAACTCCACATTATGGTTCAAAAAGACAC
CGCTAATCTCGTGTTACAAAACAGTATCGACGCTTGGAATATACCACACC
GCCGCCGCAACACCCCAAACGCGAAACTTTAGATGAGATGAGATGCTCAC
GGCCGTGTGCTGCTAAATACATAGTACATATGAGCAAGATAAACATTCCT
CGGGTTTTGTGTATTTCTAGTTTGGCCCATCATGCGTTTTCCTCTCCTCG
CTGTAGCGTCATTCCATCTCTCCGCCACCGACCACCGACCCGACCGCCCT
TCTTCCAGAGATAGAACACGGCAGCTGGCTTGGCGGTCGAGCAAGTGCGC
AGCCAGCATGCCCGAGCTCTCCGACGAGGAGCGCCTGCTTCTGGTAGACA
GGGTGGACGAGCTCCGGCTCAACGGGGACCAGAAGATGATCCTCAGCGAC
AAAGCGATGAACTGCCAGAGAAACGATGCGGACTTCAAGAAGCTCAAGAT
GCTCGGCACCTTTTGGCGCCGGTACAGGTGCGGCGCGAAGCAAGAACTTG
TGCGCGCTTGCGCGTGAACGTGTCTAGGGTGACTCTCGCGGACTCGGGGC
GGGTCGGGGGGGGCGGGGACGGTAGGGCTTATATATATACCGTGGCAGGG
GCGATGAACTAACTATTTGGCTGGCGCGTGGGTATCATCGCCGGAGTGTA
TACATGGCGTTGATCGTGTGCCACCACACTGCTGCAATCGCTGGGCACCA
ACTTTGTCCTCCTCGGCTCCTCGCAGGGAGGGTTTGGTGTCCTACGCCAA
CTTCAGCAGACAGGTCGACAAGGCCTGTGGGTTGCCCGAAGAGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1773:2275..5420+

>mRNA_L-elsbetiae_contig1773.5036.1 ID=mRNA_L-elsbetiae_contig1773.5036.1|Name=mRNA_L-elsbetiae_contig1773.5036.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1773:2275..5420+ (Laminarionema elsbetiae ELsaHSoW15)
TCATGTATTTCTGGAGCGAAATCCTGTTCCTGTGTGTGTACCTTGCTTGA
CATCACACGTATCGCCTGCGCGCGTTCGTCGTGGACTGGCCCAGCAGCAG
GAAGGAGAATCTGCAGTCATGTATTTCTGGAGCGAAATCCTGTTCCTGTG
TGTGTACCTTGCTTGACATCACACGTATCGCCTGCGCGCGTTCGTCGTGG
ACTGGCCCAGCAGCAGGAAGGAGAATCTGCAGAGATAGAACACGGCAGCT
GGCTTGGCGGTCGAGCAAGTGCGCAGCCAGCATGCCCGAGCTCTCCGACG
AGGAGCGCCTGCTTCTGGTAGACAGGGTGGACGAGCTCCGGCTCAACGGG
GACCAGAAGATGATCCTCAGCGACAAAGCGATGAACTGCCAGAGAAACGA
TGCGGACTTCAAGAAGCTCAAGATGCTCGGCACCTTTTGGCGCCGGTACA
GAGATAGAACACGGCAGCTGGCTTGGCGGTCGAGCAAGTGCGCAGCCAGC
ATGCCCGAGCTCTCCGACGAGGAGCGCCTGCTTCTGGTAGACAGGGTGGA
CGAGCTCCGGCTCAACGGGGACCAGAAGATGATCCTCAGCGACAAAGCGA
TGAACTGCCAGAGAAACGATGCGGACTTCAAGAAGCTCAAGATGCTCGGC
ACCTTTTGGCGCCGGTACAGGGAGGGTTTGGTGTCCTACGCCAACTTCAG
CAGACAGGTCGACAAGGCCTGTGGGTTGCCCGAAGAGCGAGGAGGGTTTG
GTGTCCTACGCCAACTTCAGCAGACAGGTCGACAAGGCCTGTGGGTTGCC
CGAAGAGCGA
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