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Homology
BLAST of mRNA_L-elsbetiae_contig1772.5033.1 vs. uniprot
Match: A0A6H5JND2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND2_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.270e-18 Identity = 99/161 (61.49%), Postives = 111/161 (68.94%), Query Frame = 1
Query: 46 MGEPVIGSIVCGSVALVMVIWNWRIVEHQKWLLRKCGKEAATKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----------CPSSSRSFVVKLESLPEWNESSPD---------MFSKTRERFETAPMSPALSSTRSRSGTGCFFKD 471
MGEP+I SI CGS+A+VM++WNWR+ E QK + C XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CPS V+KLESLPE NES+ + +K RER ETAP+SP LSSTRSRSGTGCFF D
Sbjct: 1 MGEPIIASITCGSIAVVMLLWNWRMYELQKTRGKACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAICPSR----VIKLESLPECNESTSQSQDKQSPLLLVTKPRERLETAPLSPPLSSTRSRSGTGCFFTD 157
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_000670.1 |
| Exons | 2 |
| Model size | 930 |
| Cds size | 498 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815738.8779156-UTR-L-elsbetiae_contig1772:6453..6840 | 1622815738.8779156-UTR-L-elsbetiae_contig1772:6453..6840 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1772 6454..6840 - |
| 1691683070.9333367-UTR-L-elsbetiae_contig1772:6453..6840 | 1691683070.9333367-UTR-L-elsbetiae_contig1772:6453..6840 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1772 6454..6840 - |
| 1622815738.9167967-UTR-L-elsbetiae_contig1772:8126..8171 | 1622815738.9167967-UTR-L-elsbetiae_contig1772:8126..8171 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1772 8127..8171 - |
| 1691683070.9636402-UTR-L-elsbetiae_contig1772:8126..8171 | 1691683070.9636402-UTR-L-elsbetiae_contig1772:8126..8171 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1772 8127..8171 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815738.8928154-CDS-L-elsbetiae_contig1772:6840..6910 | 1622815738.8928154-CDS-L-elsbetiae_contig1772:6840..6910 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1772 6841..6910 - |
| 1691683070.9428985-CDS-L-elsbetiae_contig1772:6840..6910 | 1691683070.9428985-CDS-L-elsbetiae_contig1772:6840..6910 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1772 6841..6910 - |
| 1622815738.906352-CDS-L-elsbetiae_contig1772:7698..8126 | 1622815738.906352-CDS-L-elsbetiae_contig1772:7698..8126 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1772 7699..8126 - |
| 1691683070.9535286-CDS-L-elsbetiae_contig1772:7698..8126 | 1691683070.9535286-CDS-L-elsbetiae_contig1772:7698..8126 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1772 7699..8126 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1772.5033.1 >prot_L-elsbetiae_contig1772.5033.1 ID=prot_L-elsbetiae_contig1772.5033.1|Name=mRNA_L-elsbetiae_contig1772.5033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MGEPVIGSIVCGSVALVMVIWNWRIVEHQKWLLRKCGKEAATKARARAQL
RAEARAKVAVSVAALEEASEEATRVSTEASTKSSACPSSSRSFVVKLESL
PEWNESSPDMFSKTRERFETAPMSPALSSTRSRSGTGCFFKDGSDTKPAV
DYRMSTGGDIDMYLA* back to topmRNA from alignment at L-elsbetiae_contig1772:6454..8171- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1772.5033.1 ID=mRNA_L-elsbetiae_contig1772.5033.1|Name=mRNA_L-elsbetiae_contig1772.5033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1718bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:6454..8171- (Laminarionema elsbetiae ELsaHSoW15)
TATACTTCTCACATCAAGCAGAGAAACGCAGAAAAGCACGTAAAAATGGG
CGAGCCGGTGATCGGGAGCATTGTGTGCGGGTCCGTGGCGCTGGTGATGG
TCATCTGGAATTGGCGCATCGTGGAGCACCAGAAGTGGTTATTGCGGAAG
TGCGGCAAGGAGGCCGCAACGAAGGCGAGAGCCAGAGCACAGCTGAGAGC
GGAAGCGCGAGCAAAGGTGGCCGTGTCTGTCGCGGCTCTGGAAGAAGCCT
CGGAAGAAGCGACGCGCGTCTCGACTGAGGCGTCGACGAAGTCTTCGGCC
TGCCCCTCTTCTTCGCGCTCCTTCGTCGTGAAGCTGGAGTCGCTACCCGA
GTGGAACGAGAGCTCGCCGGACATGTTCTCGAAGACGCGCGAGAGGTTCG
AGACTGCACCGATGTCCCCGGCCTTGTCCTCCACACGTTCGCGATCAGGA
ACCGGGTGCTTCTTCAAGGACGGGTGAGCCGACCATCCTTGCTGCGAGAG
TCCTTGCTTTCGGTGACAAATGAGAAATAAGTGGTCCGATACTTGTCCTC
GGCAAGAAACCCTCAACGGCTGCGCAATATTTACGCGCGCGTCCCGAACG
TTCGTATCAACATTCAACTTCACTGATACACCTTGAATCTTGGTTGAAAA
ATCCGGTACGACGTGCCGACCGGGCTTCATTGCAAGGTTTGCTTTCGACA
CTTTGGGGGGGTAAACCGTTTCTGAGTGACGTGAGTGCTGGTTACCACGG
ACGAGAATGTAGCAGACAGGGCAAACGGATATTTATTTGATGTTTAGCCG
CGCGCGCCCGCCTCTTTCTAGTAAATCTCCTTGCCCCAAGGGATTCACCC
GGTATTGTTGCGTACGCGGGGTAGTAAAAACAAAGCTGTGTTCGGTGACT
GCTTGCCCCTTCGTCCCTCACCTTTACTGCTGCTGTAGGTATGTACATAA
AGTAGCAGCACGGAACCGTGGTCTTTTGTTCTCAAAATAGCGAATAAACC
AACCGCCAGTCGCATAAAAAAAAAGAAGTAAAATATTCTTTTATATGTGC
TTGTGACTTGTGACCACGGGATGGAGGTACTGACTAGAGAGATCGGAACG
GTTTATAATATGATGACGGCAACAACTGCGAGAAATCAGCTTGAGAAATC
AGCTTGCGTATTGTATTTACGTCACAAGCACGTCGTTGTCCTGCTCACAT
CGTTTCTCACGCCCCTTTCTTATCAATGCGCTCATCCCTCTTACCCTCTG
CTTCACTGCAGGTCCGACACCAAGCCCGCCGTCGACTACCGCATGTCGAC
CGGTGGTGACATCGACATGTATCTGGCTTGAAGCGCATGAACAAGACAGA
CTCGCTGGCCAGGCAGATGCAGCAGGCGGCAGCGCGGAAGGTTCCGACGT
TCCGATAGCCGTTCCGCCGTCTCAGGCCCCGTCGCGAAGGCTCGTGCGTC
CCCACTTGCAATAGCGAGCCGGAGATAAAACAACGGCCTCTGCAGCCGAG
AGCGGGAGAGATGTACGGTGCGGGGGGGTGGCTTGGTATATCAGCGGCAG
GAAGGGGGGGCTCCTTGTACCACTGCCCTCCAGCGGGCTTTGAATGGGTC
TCATTTCACCTATAAATGCTGCTGTGTGTACGGTAGCTCGAGCCTGCACA
ACTTGGCGCCAGATGAAGGGACGCAGTCTCTTCGCAGCTGCAACTGGCGG
TACGAACGAGTGTTGAAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1772:6454..8171- >mRNA_L-elsbetiae_contig1772.5033.1 ID=mRNA_L-elsbetiae_contig1772.5033.1|Name=mRNA_L-elsbetiae_contig1772.5033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:6454..8171- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAGCCGGTGATCGGGAGCATTGTGTGCGGGTCCGTGGCGCTGGT
GATGGTCATCTGGAATTGGCGCATCGTGGAGCACCAGAAGTGGTTATTGC
GGAAGTGCGGCAAGGAGGCCGCAACGAAGGCGAGAGCCAGAGCACAGCTG
AGAGCGGAAGCGCGAGCAAAGGTGGCCGTGTCTGTCGCGGCTCTGGAAGA
AGCCTCGGAAGAAGCGACGCGCGTCTCGACTGAGGCGTCGACGAAGTCTT
CGGCCTGCCCCTCTTCTTCGCGCTCCTTCGTCGTGAAGCTGGAGTCGCTA
CCCGAGTGGAACGAGAGCTCGCCGGACATGTTCTCGAAGACGCGCGAGAG
GTTCGAGACTGCACCGATGTCCCCGGCCTTGTCCTCCACACGTTCGCGAT
CAGGAACCGGGTGCTTCTTCAAGGACGGATGGGCGAGCCGGTGATCGGGA
GCATTGTGTGCGGGTCCGTGGCGCTGGTGATGGTCATCTGGAATTGGCGC
ATCGTGGAGCACCAGAAGTGGTTATTGCGGAAGTGCGGCAAGGAGGCCGC
AACGAAGGCGAGAGCCAGAGCACAGCTGAGAGCGGAAGCGCGAGCAAAGG
TGGCCGTGTCTGTCGCGGCTCTGGAAGAAGCCTCGGAAGAAGCGACGCGC
GTCTCGACTGAGGCGTCGACGAAGTCTTCGGCCTGCCCCTCTTCTTCGCG
CTCCTTCGTCGTGAAGCTGGAGTCGCTACCCGAGTGGAACGAGAGCTCGC
CGGACATGTTCTCGAAGACGCGCGAGAGGTTCGAGACTGCACCGATGTCC
CCGGCCTTGTCCTCCACACGTTCGCGATCAGGAACCGGGTGCTTCTTCAA
GGACGGGTCCGACACCAAGCCCGCCGTCGACTACCGCATGTCGACCGGTG
GTGACATCGACATGTATCTGGCTTGAGTCCGACACCAAGCCCGCCGTCGA
CTACCGCATGTCGACCGGTGGTGACATCGACATGTATCTGGCTTGA back to top
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