mRNA_L-elsbetiae_contig1772.5032.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1772.5032.1
Unique NamemRNA_L-elsbetiae_contig1772.5032.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1772.5032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1772contigL-elsbetiae_contig1772:5981..6309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.9518166-CDS-L-elsbetiae_contig1772:5980..63071622815738.9518166-CDS-L-elsbetiae_contig1772:5980..6307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1772 5981..6307 +
1691683070.9748547-CDS-L-elsbetiae_contig1772:5980..63071691683070.9748547-CDS-L-elsbetiae_contig1772:5980..6307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1772 5981..6307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1772.5032.1prot_L-elsbetiae_contig1772.5032.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1772 5981..6307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1772.5032.1

>prot_L-elsbetiae_contig1772.5032.1 ID=prot_L-elsbetiae_contig1772.5032.1|Name=mRNA_L-elsbetiae_contig1772.5032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
ACKKPTARKDRTSYRGPAKFDRKLCSKSTMHVSSKLLSHPRAKNLDNTLH
SDEPTYVVTPQLAVPVENTKIQTYHIFQSSFLSSPQEAETASSVFVVGTY
SRASTRPSG
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mRNA from alignment at L-elsbetiae_contig1772:5981..6309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1772.5032.1 ID=mRNA_L-elsbetiae_contig1772.5032.1|Name=mRNA_L-elsbetiae_contig1772.5032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=329bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:5981..6309+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGCAAAAAACCAACCGCAAGGAAAGATCGAACAAGCTACCGGGGGCC
GGCCAAGTTCGATCGTAAGTTATGCAGCAAATCAACGATGCATGTAAGCT
CTAAGCTCCTGTCACACCCCCGGGCAAAAAACCTTGACAACACTCTACAT
AGCGACGAACCTACGTATGTAGTGACGCCACAACTTGCCGTGCCCGTGGA
AAATACGAAAATACAAACGTACCACATTTTTCAATCTTCCTTTTTGTCAA
GCCCGCAAGAGGCGGAAACAGCGTCGAGCGTGTTTGTTGTGGGAACATAC
TCGCGGGCATCCACCCGTCCGTCTGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1772:5981..6309+

>mRNA_L-elsbetiae_contig1772.5032.1 ID=mRNA_L-elsbetiae_contig1772.5032.1|Name=mRNA_L-elsbetiae_contig1772.5032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:5981..6309+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGCAAAAAACCAACCGCAAGGAAAGATCGAACAAGCTACCGGGGGCC
GGCCAAGTTCGATCGTAAGTTATGCAGCAAATCAACGATGCATGTAAGCT
CTAAGCTCCTGTCACACCCCCGGGCAAAAAACCTTGACAACACTCTACAT
AGCGACGAACCTACGTATGTAGTGACGCCACAACTTGCCGTGCCCGTGGA
AAATACGAAAATACAAACGTACCACATTTTTCAATCTTCCTTTTTGTCAA
GCCCGCAAGAGGCGGAAACAGCGTCGAGCGTGTTTGTTGTGGGAACATAC
TCGCGGGCATCCACCCGTCCGTCTGGCGCATGCAAAAAACCAACCGCAAG
GAAAGATCGAACAAGCTACCGGGGGCCGGCCAAGTTCGATCGTAAGTTAT
GCAGCAAATCAACGATGCATGTAAGCTCTAAGCTCCTGTCACACCCCCGG
GCAAAAAACCTTGACAACACTCTACATAGCGACGAACCTACGTATGTAGT
GACGCCACAACTTGCCGTGCCCGTGGAAAATACGAAAATACAAACGTACC
ACATTTTTCAATCTTCCTTTTTGTCAAGCCCGCAAGAGGCGGAAACAGCG
TCGAGCGTGTTTGTTGTGGGAACATACTCGCGGGCATCCACCCGTCCGTC
TGGC
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