mRNA_L-elsbetiae_contig1772.5031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1772.5031.1
Unique NamemRNA_L-elsbetiae_contig1772.5031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1772.5031.1 vs. uniprot
Match: A0A6H5JSQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.080e-18
Identity = 97/234 (41.45%), Postives = 122/234 (52.14%), Query Frame = 1 
Query:   10 MASATMPSHGMSRAAMSIP--TSGSTRGAGAARVSRGQKRSASSKAAPSHFSRDTGDAAQDIGQAED----QQQHPASVFYF--VEGATTPPPAAQIPNTPAQRDHLSPPAGPPEPGG--------------EEKGAFQPAYNRPWRKRAREARRPTVVLENTPE--LGPEGLGEGGSGDAMRQRASEKEEVVAHRKETKKKAMNTAALPIVDLVGIVSPLVIIVGMTIVQNAP 639
            M SA +P HG  RAA SIP  T+G T   G ARV  G      S   P      T  AA   G A+D    +Q +P S  +F  V+G   P   +Q+P +P ++  L  PAGPPEPGG              +  GA   AY+RPWR+RAR+ARR TV  EN PE     E                    +VA RK++++KA+N AALPIVDLVG+VSPLV+I GMT+V   P
Sbjct:   33 MVSALIPPHG--RAANSIPSTTAGGTP-TGPARVFVG------SDGNPKLSPTGTAAAAPPSGDADDAHRERQHNPTSAVFFDDVDGHAEP---SQLPGSPYEQRDL--PAGPPEPGGGVDQRHRAQQLVSSQRSGALPAAYHRPWRQRARDARRQTV-FENNPEERFEAEXXXXXXXXXXXXXXXXXXXXLVASRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 251
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BLAST of mRNA_L-elsbetiae_contig1772.5031.1 vs. uniprot
Match: D7FP65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP65_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.440e-11
Identity = 61/141 (43.26%), Postives = 78/141 (55.32%), Query Frame = 1 
Query:  268 AQIPNTPAQRDHLSPPAGPPEPGG--------------EEKGAFQPAYNRPWRKRAREARRPTVVLENTPELGPEGLGEGGSGDAMRQRASEKEEVVAH---RKETKKKAMNTAALPIVDLVGIVSPLVIIVGMTIVQNAP 639
            +Q+P +   +  LS  AGPPEPGG              +  GA   AY+RPWR+RAR+ARR TV  EN PE G  G  EG                      R+++++KA+N AALPIVDLVG+VSPLV+I GMT+V   P
Sbjct:  118 SQLPGSLYDQRDLS--AGPPEPGGGVDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTV-FENNPEEGF-GAEEGXXXXXXXXXXXXXXXXXXXXXXRRDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1772.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSQ5_9PHAE1.080e-1841.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP65_ECTSI1.440e-1143.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1772contigL-elsbetiae_contig1772:863..3538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000680.1
Exons1
Model size2676
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1772.5031.1prot_L-elsbetiae_contig1772.5031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1772 872..1504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.991222-UTR-L-elsbetiae_contig1772:862..8711622815738.991222-UTR-L-elsbetiae_contig1772:862..871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1772 863..871 +
1691683070.9867554-UTR-L-elsbetiae_contig1772:862..8711691683070.9867554-UTR-L-elsbetiae_contig1772:862..871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1772 863..871 +
1622815739.0200703-UTR-L-elsbetiae_contig1772:1504..35381622815739.0200703-UTR-L-elsbetiae_contig1772:1504..3538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1772 1505..3538 +
1691683071.0071378-UTR-L-elsbetiae_contig1772:1504..35381691683071.0071378-UTR-L-elsbetiae_contig1772:1504..3538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1772 1505..3538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.0038252-CDS-L-elsbetiae_contig1772:871..15041622815739.0038252-CDS-L-elsbetiae_contig1772:871..1504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1772 872..1504 +
1691683070.997726-CDS-L-elsbetiae_contig1772:871..15041691683070.997726-CDS-L-elsbetiae_contig1772:871..1504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1772 872..1504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1772.5031.1

>prot_L-elsbetiae_contig1772.5031.1 ID=prot_L-elsbetiae_contig1772.5031.1|Name=mRNA_L-elsbetiae_contig1772.5031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MASATMPSHGMSRAAMSIPTSGSTRGAGAARVSRGQKRSASSKAAPSHFS
RDTGDAAQDIGQAEDQQQHPASVFYFVEGATTPPPAAQIPNTPAQRDHLS
PPAGPPEPGGEEKGAFQPAYNRPWRKRAREARRPTVVLENTPELGPEGLG
EGGSGDAMRQRASEKEEVVAHRKETKKKAMNTAALPIVDLVGIVSPLVII
VGMTIVQNAP*
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mRNA from alignment at L-elsbetiae_contig1772:863..3538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1772.5031.1 ID=mRNA_L-elsbetiae_contig1772.5031.1|Name=mRNA_L-elsbetiae_contig1772.5031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:863..3538+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGAGTATGGCGAGCGCGACGATGCCCTCGCACGGCATGAGCAGGGC
AGCAATGTCCATCCCCACCAGCGGCAGCACGCGCGGCGCGGGCGCAGCTC
GAGTCTCGCGCGGCCAGAAGCGATCGGCATCATCGAAGGCGGCTCCCTCT
CACTTCTCCAGAGATACCGGAGACGCCGCGCAAGACATCGGTCAAGCGGA
AGATCAGCAACAACATCCCGCCTCGGTGTTTTATTTCGTTGAGGGTGCCA
CCACCCCCCCTCCGGCGGCACAGATTCCCAACACGCCCGCCCAGAGGGAC
CACCTCTCCCCGCCCGCGGGCCCCCCAGAGCCCGGTGGGGAAGAAAAAGG
GGCTTTTCAGCCCGCCTACAACCGCCCGTGGCGGAAGCGCGCGCGCGAGG
CCAGGCGCCCCACGGTGGTGTTGGAGAATACGCCGGAGCTTGGGCCAGAG
GGCTTGGGGGAGGGGGGCAGCGGAGACGCGATGAGGCAGCGCGCCTCCGA
GAAGGAGGAGGTGGTAGCGCACAGGAAGGAGACGAAGAAGAAGGCGATGA
ACACGGCAGCTCTGCCCATCGTCGACCTGGTCGGCATCGTGTCCCCCCTG
GTTATCATTGTGGGGATGACCATCGTGCAAAACGCGCCTTGATATGGTTG
AGTGGCTTTTCTTTTATGTCTTGAGAGAAAGTGGCGCCCATGTCCGGCCC
GGCCCCCGCACGGGCGATGTCTAAATGGCGCACGGGCGATGTCTAAATAA
GAACAGAGTAGTATGATAGTTAGCTTGGGGCTATTGGTATCGGCGCAAGC
AATGACGCTTGCGCACAATTTTGACAGGGTTGGGGAGAGGGAGAGCAAAA
CATGCGAGCTGGCTGCACCACGCTGCTGCAGCCGCACGAGTATTTGTGAA
CGTGGTGCAGGAGTGAATTGTATGTCATGGCTTGGATGATAGCCAGTTCG
GTGTCAGACGATGGGTGAGGGAGGCAGTGCGGAGGAGCACTTTTATAGTT
GTTGGGAATGTATTTTGAGGCGGTATGATGCACGCTCGCACGGAAGGGGT
ACGGACTGCTGCTGTTTGATTTTCGTCGAGCTGTTGCCGGAATTCGTGTT
GTTTCTGTGTTTGCTTTCTGGTTCAACAGCGGATGGTTGTGTTTGACGCG
TGAGGGATTCCAGCATCATGGATGGCATGTTTCCCCCCCCCCAGACTCGG
TTCGGGAACGTGACGCACGCGAGTGAGTGAGTGGGCAGTGGTATGCTGTG
TGTCGTGTTTGTGTCTGTTCATGAAGACCTGGTTGTTTAGTCCACAGGTA
GTGTTAGTCGCGAAGGGTAGGGTTTGATCAGAGAACGGCCGCACGCTTCG
AAAGACGCTGTTGTGGTGCTCGAAGTAAAAAAAAACAGGGTTGGATGTAA
AGACATGGAATTGTCGGGATGTGTGTTGATGGGTGGTATTTGAGCTTTGA
GAATGTTTCCGCTTGATGGCAGAATCATGAGGCACGTGCGTGTGTCAGCT
AGTGACGTGTGTCAGCTAGTGACGTGTAGTGTGGGTAGTCATCACGTGTA
TACAGAGTTTTGCGAGTGGGCGGGTTGCGGTGTTGTGTGCGTTGTGCAAT
AGTCACGTGTGTATGTTGGACTTGTACTCCGGTGGTGCGATGAGCGCGAG
CTCTCTCAATGATGTTTCTAGTTCTGCCTCGCGGCTGCACACCAGCTGCC
GTAAAAAGGCAAAAGGTGTTATTTGTGCTACATGTGATTTTCGTTTTTTT
TTATTTTTTATATGTATGTTGTTGTGCTTTCTTTCACCTTGGGGGGAGAT
AAGCAGTAAGGAGCGGAGGTTGATCAAGCGCTTGATGCTGACGCTGCTCT
ACAGTTCATCGACCGCTTGATGTTGATGTCAGCGGTAGCAATCTATGGGT
GTAAGTAGGGCTCGGGTTCCGGAAGTGGTGTTTCTTGACTTGCCTACCGA
GGACGACACCTTTGTTTTCTGTTTTTTGTGGCTCGACGCGATGGTTGTCT
GTGGAATCTCTGCAATGGACACTAGCCTGGCTTCTGTCGTATTTTCGAAG
CGTGTGCGCAGCGTAGCATATACATTCATTCCTGGGGCATTTTGCGACAC
AAAAGTTGTTTTCACGTTGCATGCATGGTTCGGTGGTCGTGTTGGCGTGC
CGCCGTGATATAGTGAAAATATACGAATGCCATCTATATGGCGAGACTTA
AAACAAAAAAAAAGTATGACAGCACGTGTGTGCAGGTTGGGTGTGGTGGT
TCGATTTGGATGGGATCTCTGGGCCCGTATGTTGCACATGTGCGTGGATG
GATATGTTGCGAGTCATGGGCAGGGAGGGAAGGGGGCGACTTGGTGATAG
GACGAGGCGTGGGGTAGGATGATGGGAGCGAGTAGGAAGCTACGGCATGA
CTGCTTGCTGTGCGGTTGTGAATCGTGTCGATGGATTGACACGATTGATG
GAAGCTGTCTACGAAGCCTATGGTATTTGGAGTTTGTTTCGAGTGGAGGA
GACCGAGGACCCGGTTTGGTATCGAAGCTCATGCATTCATGAAATATTTA
GTATCTTATCTATTGATCTGTTCTCCAGCACAGGAAGCTGTCTGCAAAGC
CTATGCTATTCGGAGTTGGTTTGTTTCGAGTGGAGGGGACCGAGGGCCCG
GTTTGATATCGAAGCTGCATGCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1772:863..3538+

>mRNA_L-elsbetiae_contig1772.5031.1 ID=mRNA_L-elsbetiae_contig1772.5031.1|Name=mRNA_L-elsbetiae_contig1772.5031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig1772:863..3538+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAGCGCGACGATGCCCTCGCACGGCATGAGCAGGGCAGCAATGTC
CATCCCCACCAGCGGCAGCACGCGCGGCGCGGGCGCAGCTCGAGTCTCGC
GCGGCCAGAAGCGATCGGCATCATCGAAGGCGGCTCCCTCTCACTTCTCC
AGAGATACCGGAGACGCCGCGCAAGACATCGGTCAAGCGGAAGATCAGCA
ACAACATCCCGCCTCGGTGTTTTATTTCGTTGAGGGTGCCACCACCCCCC
CTCCGGCGGCACAGATTCCCAACACGCCCGCCCAGAGGGACCACCTCTCC
CCGCCCGCGGGCCCCCCAGAGCCCGGTGGGGAAGAAAAAGGGGCTTTTCA
GCCCGCCTACAACCGCCCGTGGCGGAAGCGCGCGCGCGAGGCCAGGCGCC
CCACGGTGGTGTTGGAGAATACGCCGGAGCTTGGGCCAGAGGGCTTGGGG
GAGGGGGGCAGCGGAGACGCGATGAGGCAGCGCGCCTCCGAGAAGGAGGA
GGTGGTAGCGCACAGGAAGGAGACGAAGAAGAAGGCGATGAACACGGCAG
CTCTGCCCATCGTCGACCTGGTCGGCATCGTGTCCCCCCTGGTTATCATT
GTGGGGATGACCATCGTGCAAAACGCGCCTTGAATGGCGAGCGCGACGAT
GCCCTCGCACGGCATGAGCAGGGCAGCAATGTCCATCCCCACCAGCGGCA
GCACGCGCGGCGCGGGCGCAGCTCGAGTCTCGCGCGGCCAGAAGCGATCG
GCATCATCGAAGGCGGCTCCCTCTCACTTCTCCAGAGATACCGGAGACGC
CGCGCAAGACATCGGTCAAGCGGAAGATCAGCAACAACATCCCGCCTCGG
TGTTTTATTTCGTTGAGGGTGCCACCACCCCCCCTCCGGCGGCACAGATT
CCCAACACGCCCGCCCAGAGGGACCACCTCTCCCCGCCCGCGGGCCCCCC
AGAGCCCGGTGGGGAAGAAAAAGGGGCTTTTCAGCCCGCCTACAACCGCC
CGTGGCGGAAGCGCGCGCGCGAGGCCAGGCGCCCCACGGTGGTGTTGGAG
AATACGCCGGAGCTTGGGCCAGAGGGCTTGGGGGAGGGGGGCAGCGGAGA
CGCGATGAGGCAGCGCGCCTCCGAGAAGGAGGAGGTGGTAGCGCACAGGA
AGGAGACGAAGAAGAAGGCGATGAACACGGCAGCTCTGCCCATCGTCGAC
CTGGTCGGCATCGTGTCCCCCCTGGTTATCATTGTGGGGATGACCATCGT
GCAAAACGCGCCTTGA
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