mRNA_L-elsbetiae_contig17716.5030.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17716.5030.1
Unique NamemRNA_L-elsbetiae_contig17716.5030.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17716.5030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17716contigL-elsbetiae_contig17716:2458..2912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17716.5030.1prot_L-elsbetiae_contig17716.5030.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17716 2564..2881 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.8172672-UTR-L-elsbetiae_contig17716:2457..25631622815738.8172672-UTR-L-elsbetiae_contig17716:2457..2563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17716 2458..2563 +
1691683070.9022746-UTR-L-elsbetiae_contig17716:2457..25631691683070.9022746-UTR-L-elsbetiae_contig17716:2457..2563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17716 2458..2563 +
1622815738.8474803-UTR-L-elsbetiae_contig17716:2881..29121622815738.8474803-UTR-L-elsbetiae_contig17716:2881..2912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17716 2882..2912 +
1691683070.9217298-UTR-L-elsbetiae_contig17716:2881..29121691683070.9217298-UTR-L-elsbetiae_contig17716:2881..2912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17716 2882..2912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.832438-CDS-L-elsbetiae_contig17716:2563..28811622815738.832438-CDS-L-elsbetiae_contig17716:2563..2881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17716 2564..2881 +
1691683070.910294-CDS-L-elsbetiae_contig17716:2563..28811691683070.910294-CDS-L-elsbetiae_contig17716:2563..2881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17716 2564..2881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17716.5030.1

>prot_L-elsbetiae_contig17716.5030.1 ID=prot_L-elsbetiae_contig17716.5030.1|Name=mRNA_L-elsbetiae_contig17716.5030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MGHVSPKPSLPSGGRAFYHRFHTMQEDGFKTKFRDQLRDDFPPQMPQRKS
YVCVLHAQFLFRSPKCYPLVVWVTNHTSSNPPYVLTVKNRRTGGAAGPRV
RSSCT*
back to top

mRNA from alignment at L-elsbetiae_contig17716:2458..2912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17716.5030.1 ID=mRNA_L-elsbetiae_contig17716.5030.1|Name=mRNA_L-elsbetiae_contig17716.5030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig17716:2458..2912+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTAGAAGTTATCCGCAAGCTGAACCGCAAAACTTCACAGAATCTT
TTGATGGCTCCAGCACTTTGTGACCACGGGCCCGTGAGTTGCTAGATTTT
TTCTACATGGGTCACGTCAGCCCAAAACCAAGTCTTCCTTCGGGAGGCAG
AGCTTTCTACCACCGATTTCATACAATGCAAGAGGACGGCTTCAAAACTA
AGTTTCGCGACCAATTACGCGACGACTTTCCGCCTCAAATGCCACAAAGA
AAATCGTATGTATGTGTACTACACGCTCAGTTCCTGTTCCGCTCACCAAA
ATGTTACCCCTTGGTAGTCTGGGTAACTAACCACACATCATCGAACCCTC
CCTATGTATTAACTGTCAAAAACCGAAGGACGGGGGGGGCGGCAGGCCCC
CGCGTCCGGAGCTCTTGTACATAGTATTCCAACACTTGATGCGGTCAATT
CCCAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17716:2458..2912+

>mRNA_L-elsbetiae_contig17716.5030.1 ID=mRNA_L-elsbetiae_contig17716.5030.1|Name=mRNA_L-elsbetiae_contig17716.5030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig17716:2458..2912+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCACGTCAGCCCAAAACCAAGTCTTCCTTCGGGAGGCAGAGCTTT
CTACCACCGATTTCATACAATGCAAGAGGACGGCTTCAAAACTAAGTTTC
GCGACCAATTACGCGACGACTTTCCGCCTCAAATGCCACAAAGAAAATCG
TATGTATGTGTACTACACGCTCAGTTCCTGTTCCGCTCACCAAAATGTTA
CCCCTTGGTAGTCTGGGTAACTAACCACACATCATCGAACCCTCCCTATG
TATTAACTGTCAAAAACCGAAGGACGGGGGGGGCGGCAGGCCCCCGCGTC
CGGAGCTCTTGTACATAGATGGGTCACGTCAGCCCAAAACCAAGTCTTCC
TTCGGGAGGCAGAGCTTTCTACCACCGATTTCATACAATGCAAGAGGACG
GCTTCAAAACTAAGTTTCGCGACCAATTACGCGACGACTTTCCGCCTCAA
ATGCCACAAAGAAAATCGTATGTATGTGTACTACACGCTCAGTTCCTGTT
CCGCTCACCAAAATGTTACCCCTTGGTAGTCTGGGTAACTAACCACACAT
CATCGAACCCTCCCTATGTATTAACTGTCAAAAACCGAAGGACGGGGGGG
GCGGCAGGCCCCCGCGTCCGGAGCTCTTGTACATAG
back to top