mRNA_L-elsbetiae_contig177.5022.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5022.1
Unique NamemRNA_L-elsbetiae_contig177.5022.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:43251..44066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-85
Ec32 orthologEc-06_005960.1
Exons1
Model size816
Cds size816
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.2807295-CDS-L-elsbetiae_contig177:43250..440661622815738.2807295-CDS-L-elsbetiae_contig177:43250..44066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 43251..44066 +
1691683070.5836127-CDS-L-elsbetiae_contig177:43250..440661691683070.5836127-CDS-L-elsbetiae_contig177:43250..44066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 43251..44066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5022.1prot_L-elsbetiae_contig177.5022.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 43251..44066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5022.1

>prot_L-elsbetiae_contig177.5022.1 ID=prot_L-elsbetiae_contig177.5022.1|Name=mRNA_L-elsbetiae_contig177.5022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MNFLQNNGIGGVEAVSMFASGNSLADAGNNISKRLLAKKFEKSLLSAADA
YVAGYSSRNTALLGVAGMSAAAGATAWGSLKAWDYASKSTESTQEQKENP
SRAGMVASFAAFAVFAIVFVLVTTARRQNMFVAFTGDNMVADYAKFTAIP
LALLFVGLRVSISSDKMGTRNVLLLASAISGAFFTAAKQFYLVFKLNGIE
RDVFSTLATVFDTCKAEPCNHEHAGFISVFDQINTVLQNNLGMVFGEVDY
AEIARELSKAQLYDNIAAFTG*
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mRNA from alignment at L-elsbetiae_contig177:43251..44066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5022.1 ID=mRNA_L-elsbetiae_contig177.5022.1|Name=mRNA_L-elsbetiae_contig177.5022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig177:43251..44066+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTTCTGCAAAATAACGGGATTGGTGGTGTCGAGGCGGTGTCCAT
GTTTGCGTCCGGCAACTCACTGGCAGACGCCGGAAATAACATATCGAAGC
GCTTGCTGGCTAAAAAATTCGAAAAATCGCTCTTGAGCGCAGCAGATGCG
TATGTCGCTGGCTACAGCTCCAGAAACACGGCCCTTTTAGGAGTCGCGGG
TATGTCAGCAGCAGCCGGTGCCACCGCGTGGGGGAGTTTAAAAGCTTGGG
ATTACGCCAGCAAATCTACCGAAAGCACGCAAGAGCAGAAAGAAAACCCA
TCGAGGGCAGGAATGGTGGCTTCTTTCGCAGCTTTTGCTGTATTTGCAAT
CGTGTTTGTGTTGGTCACCACGGCGCGGCGCCAAAACATGTTCGTCGCCT
TCACAGGCGACAACATGGTAGCGGATTACGCTAAATTCACTGCAATTCCC
CTCGCCCTTTTGTTTGTGGGGCTACGGGTCTCCATTTCCTCTGACAAAAT
GGGGACCAGGAACGTTTTGCTACTGGCGTCCGCCATCTCTGGGGCATTCT
TTACGGCAGCGAAACAATTCTACCTGGTCTTCAAGCTAAACGGCATAGAG
AGAGACGTTTTCTCGACTCTCGCCACGGTGTTTGATACCTGCAAGGCCGA
GCCATGTAACCACGAACACGCCGGCTTTATTAGCGTATTCGACCAAATCA
ACACAGTCCTACAGAACAACCTCGGGATGGTGTTCGGTGAAGTTGACTAC
GCCGAGATTGCAAGAGAATTGAGCAAGGCCCAGTTGTACGACAACATAGC
CGCCTTCACAGGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:43251..44066+

>mRNA_L-elsbetiae_contig177.5022.1 ID=mRNA_L-elsbetiae_contig177.5022.1|Name=mRNA_L-elsbetiae_contig177.5022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig177:43251..44066+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTTCTGCAAAATAACGGGATTGGTGGTGTCGAGGCGGTGTCCAT
GTTTGCGTCCGGCAACTCACTGGCAGACGCCGGAAATAACATATCGAAGC
GCTTGCTGGCTAAAAAATTCGAAAAATCGCTCTTGAGCGCAGCAGATGCG
TATGTCGCTGGCTACAGCTCCAGAAACACGGCCCTTTTAGGAGTCGCGGG
TATGTCAGCAGCAGCCGGTGCCACCGCGTGGGGGAGTTTAAAAGCTTGGG
ATTACGCCAGCAAATCTACCGAAAGCACGCAAGAGCAGAAAGAAAACCCA
TCGAGGGCAGGAATGGTGGCTTCTTTCGCAGCTTTTGCTGTATTTGCAAT
CGTGTTTGTGTTGGTCACCACGGCGCGGCGCCAAAACATGTTCGTCGCCT
TCACAGGCGACAACATGGTAGCGGATTACGCTAAATTCACTGCAATTCCC
CTCGCCCTTTTGTTTGTGGGGCTACGGGTCTCCATTTCCTCTGACAAAAT
GGGGACCAGGAACGTTTTGCTACTGGCGTCCGCCATCTCTGGGGCATTCT
TTACGGCAGCGAAACAATTCTACCTGGTCTTCAAGCTAAACGGCATAGAG
AGAGACGTTTTCTCGACTCTCGCCACGGTGTTTGATACCTGCAAGGCCGA
GCCATGTAACCACGAACACGCCGGCTTTATTAGCGTATTCGACCAAATCA
ACACAGTCCTACAGAACAACCTCGGGATGGTGTTCGGTGAAGTTGACTAC
GCCGAGATTGCAAGAGAATTGAGCAAGGCCCAGTTGTACGACAACATAGC
CGCCTTCACAGGCTAGATGAATTTTCTGCAAAATAACGGGATTGGTGGTG
TCGAGGCGGTGTCCATGTTTGCGTCCGGCAACTCACTGGCAGACGCCGGA
AATAACATATCGAAGCGCTTGCTGGCTAAAAAATTCGAAAAATCGCTCTT
GAGCGCAGCAGATGCGTATGTCGCTGGCTACAGCTCCAGAAACACGGCCC
TTTTAGGAGTCGCGGGTATGTCAGCAGCAGCCGGTGCCACCGCGTGGGGG
AGTTTAAAAGCTTGGGATTACGCCAGCAAATCTACCGAAAGCACGCAAGA
GCAGAAAGAAAACCCATCGAGGGCAGGAATGGTGGCTTCTTTCGCAGCTT
TTGCTGTATTTGCAATCGTGTTTGTGTTGGTCACCACGGCGCGGCGCCAA
AACATGTTCGTCGCCTTCACAGGCGACAACATGGTAGCGGATTACGCTAA
ATTCACTGCAATTCCCCTCGCCCTTTTGTTTGTGGGGCTACGGGTCTCCA
TTTCCTCTGACAAAATGGGGACCAGGAACGTTTTGCTACTGGCGTCCGCC
ATCTCTGGGGCATTCTTTACGGCAGCGAAACAATTCTACCTGGTCTTCAA
GCTAAACGGCATAGAGAGAGACGTTTTCTCGACTCTCGCCACGGTGTTTG
ATACCTGCAAGGCCGAGCCATGTAACCACGAACACGCCGGCTTTATTAGC
GTATTCGACCAAATCAACACAGTCCTACAGAACAACCTCGGGATGGTGTT
CGGTGAAGTTGACTACGCCGAGATTGCAAGAGAATTGAGCAAGGCCCAGT
TGTACGACAACATAGCCGCCTTCACAGGCTAG
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