mRNA_L-elsbetiae_contig177.5021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5021.1
Unique NamemRNA_L-elsbetiae_contig177.5021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: B5LWM5_9PHYC (Putative lysine methyltransferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM5_9PHYC)

HSP 1 Score: 283 bits (725), Expect = 8.370e-95
Identity = 121/197 (61.42%), Postives = 146/197 (74.11%), Query Frame = 1
Query:   10 ELSFQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAAAPNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            EL F+   WSCPL+C++C   R NGLRCKNRVC+G P+CWIHN +K+G+  +QSTIP AGKGLFATR   +N W+CPY GE    EC  QRYPG  TAPYA    +N+  D AC RGI + ANGRFN NG V+S+ RHNCI R+RPVG+G+PG+WLK+TK I+ G E+  WYG GGYQL  NHSTRRR   PD+RPC
Sbjct:   11 ELRFETDNWSCPLKCNKCTFTRPNGLRCKNRVCFGFPLCWIHNSQKFGVKIKQSTIPGAGKGLFATRQIPKNTWICPYSGEETTMECIHQRYPGDSTAPYAEKISDNIAYDCACSRGIGSLANGRFNANGKVSSVRRHNCISRYRPVGEGVPGVWLKSTKDIKSGEELMNWYGDGGYQLQQNHSTRRRRRAPDTRPC 207          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: A0A6H5JAG7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG7_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 5.810e-93
Identity = 120/200 (60.00%), Postives = 154/200 (77.00%), Query Frame = 1
Query:    7 KELSFQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAA--APNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            KE SF+   WSCPL C++C+ VRANG+RCKNRVC+G+P+C +HN  KYG+ ++ STI  AGKGLFATR F +N W+CPY+GE  + +C  +RYPG MTA YA     P  + +DSAC+RG+A+ ANG FN NG+V+SLSRHNC+ R+RPVGDG+PG+WLK+TK ++ G EIF WYG GGY L  NHST+RR   PD+RPC
Sbjct:    9 KEYSFRTASWSCPLTCEQCQEVRANGMRCKNRVCFGTPLCHVHNSLKYGVKAKTSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEILPGPEQLHIDSACKRGVASLANGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIFNWYGDGGYMLQHNHSTKRRTKAPDTRPC 208          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: Q8QNC4_ESV1K (EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K)

HSP 1 Score: 276 bits (707), Expect = 4.440e-92
Identity = 121/197 (61.42%), Postives = 143/197 (72.59%), Query Frame = 1
Query:   10 ELSFQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAAAPNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            ELSF+   WSCPL C +C H R +GLRCKNRVC+GSPVCW+HN  KYG+  + STIP AGKGLFATR   R+ W+CPY GE+    C  QRYP   TA Y      N+  D AC RGI + AN +FN NGTV++L RHNC  R+RPVGDG+PG+WLK+TK I+ G+EIF WYG GGY+L DNHST RR  VPDSRPC
Sbjct:   10 ELSFRTANWSCPLTCGQCTHTRDDGLRCKNRVCFGSPVCWVHNARKYGVKIKDSTIPGAGKGLFATRKIPRDSWICPYSGEATTMNCIHQRYPEGETAAYTEQVQANLAYDCACSRGIGSLANAQFNSNGTVSALRRHNCFSRYRPVGDGVPGVWLKSTKVIEEGQEIFNWYGNGGYRLQDNHSTSRRAKVPDSRPC 206          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: A0A6H5JFB7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB7_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 6.410e-90
Identity = 119/199 (59.80%), Postives = 143/199 (71.86%), Query Frame = 1
Query:   10 ELSFQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAAAPN--NVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            ELSF+   WSCPL+C +C H RANG RC+NRVC+GSPVCW+HN  KYG+  + STIP AGKGLFAT    ++ W+CPY GE     C  QRYPGAMTA Y    P   N+  D AC RG+ + AN RFN +G V++LSR NC+ R+RPVGDG+PG+WLKTT+ ++ G EIF WYG GGY L DNHST RR   PDSRPC
Sbjct:   10 ELSFRTADWSCPLKCGQCTHTRANGTRCRNRVCFGSPVCWLHNCIKYGVEIKDSTIPGAGKGLFATTRLPKDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEKIPGPANLAFDCACSRGVGSLANARFNADGKVSALSRQNCLSRYRPVGDGVPGVWLKTTRVVEDGDEIFNWYGDGGYLLQDNHSTSRRAKAPDSRPC 208          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: Q6XLV1_9PHYC (FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV1_9PHYC)

HSP 1 Score: 242 bits (617), Expect = 4.620e-78
Identity = 112/194 (57.73%), Postives = 132/194 (68.04%), Query Frame = 1
Query:   34 WSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAAAPNNVV----VDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQL-DDNHSTRRRESVPDSRPC 600
            WSCPL C RC +VR NG +CK RVC G P CWIH +  +G+  + STIP AGKGLFATR F++N W+CPY GE I   C  QRYPG  TAPYA   P N      VDSAC R + + ANG+F  +G+V+SL  HNC  R+RPVGDG  G+WLK+TK I+ G EIF WYG G Y L   NHST+RR   PDSRPC
Sbjct:   30 WSCPLLCQRCAYVRPNGEQCKKRVCVGHPFCWIHVRAAFGVTVKTSTIPNAGKGLFATRDFKKNTWICPYFGEIIDANCFVQRYPGKATAPYAEMLPLNTTPRKYVDSACTRSVGSLANGKFKGDGSVSSLRHHNCFTRYRPVGDGFKGVWLKSTKTIKAGDEIFNWYGEGNYNLFASNHSTKRRTKAPDSRPC 223          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: A0A6H5J8Q0_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.090e-60
Identity = 89/169 (52.66%), Postives = 118/169 (69.82%), Query Frame = 1
Query:  103 VCYGSPVCWIHNKEKYGIISRQSTIPA-AGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAA--APNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            +C      + H+     +  + ST+   AGKGLFATR F +N W+CPY+GE  + +C  +RYPG MTA YA     P  + +DSAC+RG+A+ +NG FN NG+V+SLSRHNC+ R+RPVGDG+PG+WLK+TK ++ G EIF WYG GGY L  NHST+RR   PD+RPC
Sbjct:    1 MCRRQARAFTHHGHSSHLTCKYSTVLVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEMLPGPEQLHIDSACKRGVASLSNGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIFNWYGDGGYMLQHNHSTKRRTKAPDTRPC 169          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.540e-58
Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1
Query:   19 FQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKYGIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMTAPYAAAAPNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREI 513
            FQ   WS PL   RC+H    G RCK RV +G P+  +HNK KY +  + STIP AG+GLFATR   +  W+CPY+GE     C  +RYPG MTAPY    P  + VDSA  RGI + A+G+FN +GTV+SL RHNC+ R RPVGDGIPG WLKTTK  +PG EI
Sbjct:   11 FQTADWSLPLVSGRCQHETRKGTRCKKRVSFGYPLRSVHNKLKYEVQIKPSTIPGAGEGLFATRSIPKGSWLCPYVGEETTMSCIHKRYPGTMTAPYTMQLPGGLAVDSALVRGIGSLASGKFNADGTVSSLDRHNCVARVRPVGDGIPGPWLKTTKHRRPGDEI 175          
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Match: A0A6H5J8I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.940e-39
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  295 MTAPYAAA--APNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPVGDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC 600
            MTA YA     P  + +DSAC RG+A+ +NG FN NG+V+SLSRHNC+ R+RPVGDG+PG WLK+TK I+ G EIF WYG GGY L  NHST+RR   PD+RPC
Sbjct:    1 MTASYAEMLPGPEQLHIDSACNRGVASLSNGLFNANGSVSSLSRHNCVSRYRPVGDGVPGAWLKSTKPIKIGDEIFNWYGDGGYMLQHNHSTKRRTKEPDTRPC 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
B5LWM5_9PHYC8.370e-9561.42Putative lysine methyltransferase n=1 Tax=Feldmann... [more]
A0A6H5JAG7_9PHAE5.810e-9360.00SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q8QNC4_ESV1K4.440e-9261.42EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K[more]
A0A6H5JFB7_9PHAE6.410e-9059.80SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XLV1_9PHYC4.620e-7857.73FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5J8Q0_9PHAE1.090e-6052.66SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K4T1_9PHAE3.540e-5855.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8I0_9PHAE1.940e-3961.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:40849..41451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-158 SET domain protein
Ec32 orthologEc-06_005320.1
Exons1
Model size603
Cds size603
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.2505157-CDS-L-elsbetiae_contig177:40848..414511622815738.2505157-CDS-L-elsbetiae_contig177:40848..41451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 40849..41451 +
1691683070.5740552-CDS-L-elsbetiae_contig177:40848..414511691683070.5740552-CDS-L-elsbetiae_contig177:40848..41451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 40849..41451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5021.1prot_L-elsbetiae_contig177.5021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 40849..41451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5021.1

>prot_L-elsbetiae_contig177.5021.1 ID=prot_L-elsbetiae_contig177.5021.1|Name=mRNA_L-elsbetiae_contig177.5021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MQKELSFQVPGWSCPLRCDRCEHVRANGLRCKNRVCYGSPVCWIHNKEKY
GIISRQSTIPAAGKGLFATRLFQRNRWVCPYIGESIATECSDQRYPGAMT
APYAAAAPNNVVVDSACRRGIAASANGRFNVNGTVASLSRHNCIIRHRPV
GDGIPGLWLKTTKRIQPGREIFVWYGAGGYQLDDNHSTRRRESVPDSRPC
*
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mRNA from alignment at L-elsbetiae_contig177:40849..41451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5021.1 ID=mRNA_L-elsbetiae_contig177.5021.1|Name=mRNA_L-elsbetiae_contig177.5021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=603bp|location=Sequence derived from alignment at L-elsbetiae_contig177:40849..41451+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAAAGAATTGTCGTTCCAAGTTCCTGGTTGGTCGTGTCCATTACG TTGTGACCGCTGTGAACATGTCCGGGCAAACGGTTTACGTTGCAAAAATA GGGTTTGTTATGGTTCACCCGTTTGCTGGATACATAATAAAGAAAAATAC GGTATTATATCCAGGCAATCCACAATCCCCGCTGCGGGTAAGGGCTTGTT CGCGACGCGATTGTTCCAGAGAAACAGGTGGGTGTGCCCATACATTGGGG AAAGTATCGCAACAGAGTGTAGCGATCAGCGATATCCTGGTGCCATGACA GCCCCATATGCGGCCGCTGCTCCAAATAATGTTGTGGTGGACTCTGCATG TAGAAGGGGGATTGCGGCGAGCGCTAATGGTCGTTTCAATGTTAACGGGA CGGTGGCGAGTCTAAGTAGACATAATTGTATTATAAGGCATCGCCCTGTT GGTGACGGTATCCCTGGTCTCTGGTTAAAGACGACAAAAAGAATACAGCC CGGTCGTGAAATATTTGTCTGGTACGGAGCCGGTGGGTACCAATTGGATG ACAACCACTCCACTAGGAGACGCGAGAGTGTGCCCGATTCTCGTCCATGT TAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:40849..41451+

>mRNA_L-elsbetiae_contig177.5021.1 ID=mRNA_L-elsbetiae_contig177.5021.1|Name=mRNA_L-elsbetiae_contig177.5021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig177:40849..41451+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAAAGAATTGTCGTTCCAAGTTCCTGGTTGGTCGTGTCCATTACG
TTGTGACCGCTGTGAACATGTCCGGGCAAACGGTTTACGTTGCAAAAATA
GGGTTTGTTATGGTTCACCCGTTTGCTGGATACATAATAAAGAAAAATAC
GGTATTATATCCAGGCAATCCACAATCCCCGCTGCGGGTAAGGGCTTGTT
CGCGACGCGATTGTTCCAGAGAAACAGGTGGGTGTGCCCATACATTGGGG
AAAGTATCGCAACAGAGTGTAGCGATCAGCGATATCCTGGTGCCATGACA
GCCCCATATGCGGCCGCTGCTCCAAATAATGTTGTGGTGGACTCTGCATG
TAGAAGGGGGATTGCGGCGAGCGCTAATGGTCGTTTCAATGTTAACGGGA
CGGTGGCGAGTCTAAGTAGACATAATTGTATTATAAGGCATCGCCCTGTT
GGTGACGGTATCCCTGGTCTCTGGTTAAAGACGACAAAAAGAATACAGCC
CGGTCGTGAAATATTTGTCTGGTACGGAGCCGGTGGGTACCAATTGGATG
ACAACCACTCCACTAGGAGACGCGAGAGTGTGCCCGATTCTCGTCCATGT
TAGATGCAGAAAGAATTGTCGTTCCAAGTTCCTGGTTGGTCGTGTCCATT
ACGTTGTGACCGCTGTGAACATGTCCGGGCAAACGGTTTACGTTGCAAAA
ATAGGGTTTGTTATGGTTCACCCGTTTGCTGGATACATAATAAAGAAAAA
TACGGTATTATATCCAGGCAATCCACAATCCCCGCTGCGGGTAAGGGCTT
GTTCGCGACGCGATTGTTCCAGAGAAACAGGTGGGTGTGCCCATACATTG
GGGAAAGTATCGCAACAGAGTGTAGCGATCAGCGATATCCTGGTGCCATG
ACAGCCCCATATGCGGCCGCTGCTCCAAATAATGTTGTGGTGGACTCTGC
ATGTAGAAGGGGGATTGCGGCGAGCGCTAATGGTCGTTTCAATGTTAACG
GGACGGTGGCGAGTCTAAGTAGACATAATTGTATTATAAGGCATCGCCCT
GTTGGTGACGGTATCCCTGGTCTCTGGTTAAAGACGACAAAAAGAATACA
GCCCGGTCGTGAAATATTTGTCTGGTACGGAGCCGGTGGGTACCAATTGG
ATGACAACCACTCCACTAGGAGACGCGAGAGTGTGCCCGATTCTCGTCCA
TGTTAG
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