mRNA_L-elsbetiae_contig177.5019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5019.1
Unique NamemRNA_L-elsbetiae_contig177.5019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5019.1 vs. uniprot
Match: B5LWF2_9PHYC (SET domain-containing protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF2_9PHYC)

HSP 1 Score: 193 bits (491), Expect = 1.740e-58
Identity = 94/209 (44.98%), Postives = 141/209 (67.46%), Query Frame = 1 
Query:   10 SDTESINTEDFESESESESGRNGAYGKHVRIVDKDDIALRTSSIEGAGKGVFCKRGIPARTILPFYALIKKLSHVKDGTDHSYFMSVSYMNSNNEARCIQTLIADGNPTLSCTKKLPRSLRAASYVNESTKAAPNCVFVKNPCISKQDVINSHREKKPIPVTLLVVPRDLQEGEELLTMYGPDYKRTYNVWIDKKGYKDKIVDLAHEIV 636
            S+ +++ +ED  SES  ++  +  Y  H  ++ ++D++ R S I GAG GVFCK+ +   TILP YA+++K+S +    D SY+MS+SY NS  + R +  +++DGNP L   KKLPR++RAASYVNE+++  PNC+F+ NP ++K+DV  ++R K PI   LLVVPR + +GEEL T+YG D+ R Y+ W  K     ++ DLAHEIV
Sbjct:   19 SEADTVGSEDIFSESSHDT--DDGYSLH--LIQREDVSTRESQIRGAGLGVFCKKPLEPGTILPMYAVVRKVSEIDSTDDSSYYMSISYTNSRGDKRNLTNIVSDGNPNLPSLKKLPRNMRAASYVNEASRYPPNCIFISNPMLTKEDVTRAYRYKTPIVSALLVVPRFIGKGEELFTLYGKDFVRHYSPWSGKDEDTRELQDLAHEIV 223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWF2_9PHYC1.740e-5844.98SET domain-containing protein n=1 Tax=Feldmannia s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:26991..27665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-28 SET domain protein
Ec32 orthologEc-06_006470.1
Exons1
Model size675
Cds size675
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.180532-CDS-L-elsbetiae_contig177:26990..276651622815738.180532-CDS-L-elsbetiae_contig177:26990..27665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 26991..27665 +
1691683070.5532444-CDS-L-elsbetiae_contig177:26990..276651691683070.5532444-CDS-L-elsbetiae_contig177:26990..27665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 26991..27665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5019.1prot_L-elsbetiae_contig177.5019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 26991..27665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5019.1

>prot_L-elsbetiae_contig177.5019.1 ID=prot_L-elsbetiae_contig177.5019.1|Name=mRNA_L-elsbetiae_contig177.5019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MAPSDTESINTEDFESESESESGRNGAYGKHVRIVDKDDIALRTSSIEGA
GKGVFCKRGIPARTILPFYALIKKLSHVKDGTDHSYFMSVSYMNSNNEAR
CIQTLIADGNPTLSCTKKLPRSLRAASYVNESTKAAPNCVFVKNPCISKQ
DVINSHREKKPIPVTLLVVPRDLQEGEELLTMYGPDYKRTYNVWIDKKGY
KDKIVDLAHEIVDENKCQIAQYLK*
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mRNA from alignment at L-elsbetiae_contig177:26991..27665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5019.1 ID=mRNA_L-elsbetiae_contig177.5019.1|Name=mRNA_L-elsbetiae_contig177.5019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=675bp|location=Sequence derived from alignment at L-elsbetiae_contig177:26991..27665+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCTAGTGACACCGAAAGCATCAACACAGAGGATTTTGAAAGCGA
AAGCGAAAGCGAAAGCGGGCGAAATGGTGCGTATGGGAAACACGTGCGCA
TCGTCGACAAAGACGACATCGCACTGAGGACCTCCTCGATAGAAGGTGCC
GGGAAAGGTGTTTTCTGCAAGCGAGGGATTCCTGCCAGAACGATCTTACC
CTTTTACGCCCTCATAAAAAAACTCTCACATGTGAAGGACGGTACCGACC
ACTCGTATTTCATGTCAGTCAGTTACATGAACTCCAATAATGAAGCGAGG
TGTATTCAGACGTTGATAGCCGATGGTAATCCTACTCTTTCATGTACCAA
GAAGCTGCCGAGGAGCCTCAGAGCTGCATCTTACGTCAACGAGAGTACGA
AGGCAGCGCCTAATTGTGTTTTTGTGAAGAATCCCTGTATTTCGAAACAA
GACGTCATCAATTCACACAGAGAGAAGAAACCGATTCCGGTAACACTACT
CGTCGTCCCTCGCGATCTTCAAGAGGGAGAGGAATTGCTGACAATGTACG
GTCCTGACTACAAAAGGACCTACAACGTTTGGATTGACAAGAAAGGATAC
AAGGATAAAATAGTTGACTTGGCCCACGAAATAGTGGATGAGAATAAGTG
TCAAATAGCCCAATACCTCAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:26991..27665+

>mRNA_L-elsbetiae_contig177.5019.1 ID=mRNA_L-elsbetiae_contig177.5019.1|Name=mRNA_L-elsbetiae_contig177.5019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig177:26991..27665+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCTAGTGACACCGAAAGCATCAACACAGAGGATTTTGAAAGCGA
AAGCGAAAGCGAAAGCGGGCGAAATGGTGCGTATGGGAAACACGTGCGCA
TCGTCGACAAAGACGACATCGCACTGAGGACCTCCTCGATAGAAGGTGCC
GGGAAAGGTGTTTTCTGCAAGCGAGGGATTCCTGCCAGAACGATCTTACC
CTTTTACGCCCTCATAAAAAAACTCTCACATGTGAAGGACGGTACCGACC
ACTCGTATTTCATGTCAGTCAGTTACATGAACTCCAATAATGAAGCGAGG
TGTATTCAGACGTTGATAGCCGATGGTAATCCTACTCTTTCATGTACCAA
GAAGCTGCCGAGGAGCCTCAGAGCTGCATCTTACGTCAACGAGAGTACGA
AGGCAGCGCCTAATTGTGTTTTTGTGAAGAATCCCTGTATTTCGAAACAA
GACGTCATCAATTCACACAGAGAGAAGAAACCGATTCCGGTAACACTACT
CGTCGTCCCTCGCGATCTTCAAGAGGGAGAGGAATTGCTGACAATGTACG
GTCCTGACTACAAAAGGACCTACAACGTTTGGATTGACAAGAAAGGATAC
AAGGATAAAATAGTTGACTTGGCCCACGAAATAGTGGATGAGAATAAGTG
TCAAATAGCCCAATACCTCAAGTAGATGGCGCCTAGTGACACCGAAAGCA
TCAACACAGAGGATTTTGAAAGCGAAAGCGAAAGCGAAAGCGGGCGAAAT
GGTGCGTATGGGAAACACGTGCGCATCGTCGACAAAGACGACATCGCACT
GAGGACCTCCTCGATAGAAGGTGCCGGGAAAGGTGTTTTCTGCAAGCGAG
GGATTCCTGCCAGAACGATCTTACCCTTTTACGCCCTCATAAAAAAACTC
TCACATGTGAAGGACGGTACCGACCACTCGTATTTCATGTCAGTCAGTTA
CATGAACTCCAATAATGAAGCGAGGTGTATTCAGACGTTGATAGCCGATG
GTAATCCTACTCTTTCATGTACCAAGAAGCTGCCGAGGAGCCTCAGAGCT
GCATCTTACGTCAACGAGAGTACGAAGGCAGCGCCTAATTGTGTTTTTGT
GAAGAATCCCTGTATTTCGAAACAAGACGTCATCAATTCACACAGAGAGA
AGAAACCGATTCCGGTAACACTACTCGTCGTCCCTCGCGATCTTCAAGAG
GGAGAGGAATTGCTGACAATGTACGGTCCTGACTACAAAAGGACCTACAA
CGTTTGGATTGACAAGAAAGGATACAAGGATAAAATAGTTGACTTGGCCC
ACGAAATAGTGGATGAGAATAAGTGTCAAATAGCCCAATACCTCAAGTAG
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