mRNA_L-elsbetiae_contig177.5018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5018.1
Unique NamemRNA_L-elsbetiae_contig177.5018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5018.1 vs. uniprot
Match: D8LPB0_ECTSI (EsV-1-78 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.240e-9
Identity = 56/218 (25.69%), Postives = 102/218 (46.79%), Query Frame = 1 
Query:   22 STKTKYKWEVRKKCPK-CLTAPLDHLFALNDITASVDSPRDIADGIKVVSATLRNEHMCVDVTSQMGECVSIRVGVDDEYAKIGEVMLYMGDLVKVSSSSAAPDTGVDGDWSLDILYLGHAHPLKHVSAQEFGVKYVAKISEGILFPPYNAAETIRKGFKANKVV---FARSFDERDLTPLAKKYAGLRANFYQDV-DDPQVQKRYIDHTEAHVLLSE 660
            +T++ Y W+ R +     +   LD L  ++     VD+    A  I+++ A         D+T+ +G+  +   G+  E      + + +  + + + S +A D  V    ++ I Y GH++  K   A+ F  +Y  K S+   FPPY ++E+IR+G    +++   FA    +  L   A + AGLR NFY++V DDP + +  +   E      E
Sbjct:   56 ATRSAYIWDTRGRLGNGVIVGVLDTLLRVDADQTRVDTSSGHA-SIEILQAVATVRQGDCDITNVLGDMWADGDGLRMEVP----IEVALDGVRRGNDSDSAEDVEV----TVRIRYRGHSNESKRYPAETFSARYTCKGSQTFRFPPYASSESIRRGLGTPRILRCNFAEDNGKLLLGREATESAGLRRNFYENVQDDPCLLRNVVTFIEPSARFQE 264
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPB0_ECTSI6.240e-925.69EsV-1-78 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:24602..25267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size666
Cds size657
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.134246-UTR-L-elsbetiae_contig177:24601..246101622815738.134246-UTR-L-elsbetiae_contig177:24601..24610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig177 24602..24610 +
1691683070.5356002-UTR-L-elsbetiae_contig177:24601..246101691683070.5356002-UTR-L-elsbetiae_contig177:24601..24610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig177 24602..24610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.145321-CDS-L-elsbetiae_contig177:24610..252671622815738.145321-CDS-L-elsbetiae_contig177:24610..25267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 24611..25267 +
1691683070.5446925-CDS-L-elsbetiae_contig177:24610..252671691683070.5446925-CDS-L-elsbetiae_contig177:24610..25267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 24611..25267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5018.1prot_L-elsbetiae_contig177.5018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 24611..25267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5018.1

>prot_L-elsbetiae_contig177.5018.1 ID=prot_L-elsbetiae_contig177.5018.1|Name=mRNA_L-elsbetiae_contig177.5018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MMYSSTKTKYKWEVRKKCPKCLTAPLDHLFALNDITASVDSPRDIADGIK
VVSATLRNEHMCVDVTSQMGECVSIRVGVDDEYAKIGEVMLYMGDLVKVS
SSSAAPDTGVDGDWSLDILYLGHAHPLKHVSAQEFGVKYVAKISEGILFP
PYNAAETIRKGFKANKVVFARSFDERDLTPLAKKYAGLRANFYQDVDDPQ
VQKRYIDHTEAHVLLSENG
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mRNA from alignment at L-elsbetiae_contig177:24602..25267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5018.1 ID=mRNA_L-elsbetiae_contig177.5018.1|Name=mRNA_L-elsbetiae_contig177.5018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig177:24602..25267+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTATTCATGATGTACTCGTCTACAAAAACGAAGTACAAGTGGGAGGT
AAGGAAAAAATGCCCAAAATGTTTGACAGCACCGTTAGACCACCTGTTCG
CGTTGAATGATATTACCGCGTCCGTGGACTCCCCCCGGGACATCGCCGAT
GGGATCAAGGTCGTGTCCGCTACACTGAGGAATGAACACATGTGTGTAGA
TGTCACTTCTCAAATGGGGGAATGTGTTTCAATTCGCGTGGGAGTCGATG
ACGAATATGCTAAAATAGGGGAGGTGATGTTGTATATGGGCGACCTCGTA
AAAGTTTCGTCTTCGAGTGCTGCTCCTGATACAGGTGTAGATGGTGACTG
GTCATTGGACATTCTTTATCTAGGACACGCACACCCTTTAAAGCATGTAT
CTGCACAGGAGTTCGGTGTGAAGTATGTCGCCAAGATTTCTGAGGGCATT
TTGTTTCCGCCCTACAACGCGGCAGAGACGATTAGAAAAGGCTTCAAAGC
TAACAAGGTGGTGTTTGCAAGGTCATTTGACGAGAGAGACTTGACGCCGT
TGGCCAAAAAGTACGCTGGACTCAGGGCCAATTTCTACCAGGATGTTGAT
GATCCCCAAGTCCAAAAGCGTTACATAGACCACACGGAGGCCCACGTCTT
GTTGTCAGAGAATGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:24602..25267+

>mRNA_L-elsbetiae_contig177.5018.1 ID=mRNA_L-elsbetiae_contig177.5018.1|Name=mRNA_L-elsbetiae_contig177.5018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig177:24602..25267+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTACTCGTCTACAAAAACGAAGTACAAGTGGGAGGTAAGGAAAAA
ATGCCCAAAATGTTTGACAGCACCGTTAGACCACCTGTTCGCGTTGAATG
ATATTACCGCGTCCGTGGACTCCCCCCGGGACATCGCCGATGGGATCAAG
GTCGTGTCCGCTACACTGAGGAATGAACACATGTGTGTAGATGTCACTTC
TCAAATGGGGGAATGTGTTTCAATTCGCGTGGGAGTCGATGACGAATATG
CTAAAATAGGGGAGGTGATGTTGTATATGGGCGACCTCGTAAAAGTTTCG
TCTTCGAGTGCTGCTCCTGATACAGGTGTAGATGGTGACTGGTCATTGGA
CATTCTTTATCTAGGACACGCACACCCTTTAAAGCATGTATCTGCACAGG
AGTTCGGTGTGAAGTATGTCGCCAAGATTTCTGAGGGCATTTTGTTTCCG
CCCTACAACGCGGCAGAGACGATTAGAAAAGGCTTCAAAGCTAACAAGGT
GGTGTTTGCAAGGTCATTTGACGAGAGAGACTTGACGCCGTTGGCCAAAA
AGTACGCTGGACTCAGGGCCAATTTCTACCAGGATGTTGATGATCCCCAA
GTCCAAAAGCGTTACATAGACCACACGGAGGCCCACGTCTTGTTGTCAGA
GAATGGAATGATGTACTCGTCTACAAAAACGAAGTACAAGTGGGAGGTAA
GGAAAAAATGCCCAAAATGTTTGACAGCACCGTTAGACCACCTGTTCGCG
TTGAATGATATTACCGCGTCCGTGGACTCCCCCCGGGACATCGCCGATGG
GATCAAGGTCGTGTCCGCTACACTGAGGAATGAACACATGTGTGTAGATG
TCACTTCTCAAATGGGGGAATGTGTTTCAATTCGCGTGGGAGTCGATGAC
GAATATGCTAAAATAGGGGAGGTGATGTTGTATATGGGCGACCTCGTAAA
AGTTTCGTCTTCGAGTGCTGCTCCTGATACAGGTGTAGATGGTGACTGGT
CATTGGACATTCTTTATCTAGGACACGCACACCCTTTAAAGCATGTATCT
GCACAGGAGTTCGGTGTGAAGTATGTCGCCAAGATTTCTGAGGGCATTTT
GTTTCCGCCCTACAACGCGGCAGAGACGATTAGAAAAGGCTTCAAAGCTA
ACAAGGTGGTGTTTGCAAGGTCATTTGACGAGAGAGACTTGACGCCGTTG
GCCAAAAAGTACGCTGGACTCAGGGCCAATTTCTACCAGGATGTTGATGA
TCCCCAAGTCCAAAAGCGTTACATAGACCACACGGAGGCCCACGTCTTGT
TGTCAGAGAATGGA
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