mRNA_L-elsbetiae_contig177.5016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5016.1
Unique NamemRNA_L-elsbetiae_contig177.5016.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5016.1 vs. uniprot
Match: Q6XLU8_9PHYC (FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU8_9PHYC)

HSP 1 Score: 68.6 bits (166), Expect = 8.620e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MKKEQVTFLATIGLVCTGLSQLRDDDP-MRAQFGPVTAYQMSHFVMYLSI 147
            MKK ++ FLATIGLVC  LSQL DDDP +++Q GP+T YQ SHF+MY  I
Sbjct:   11 MKKNEIAFLATIGLVCGALSQLHDDDPVLQSQVGPLTGYQASHFLMYFII 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XLU8_9PHYC8.620e-1264.00FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:22196..22623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size428
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.0404868-UTR-L-elsbetiae_contig177:22195..224731622815738.0404868-UTR-L-elsbetiae_contig177:22195..22473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig177 22196..22473 -
1691683070.5065691-UTR-L-elsbetiae_contig177:22195..224731691683070.5065691-UTR-L-elsbetiae_contig177:22195..22473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig177 22196..22473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.0527399-CDS-L-elsbetiae_contig177:22473..226231622815738.0527399-CDS-L-elsbetiae_contig177:22473..22623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 22474..22623 -
1691683070.5155494-CDS-L-elsbetiae_contig177:22473..226231691683070.5155494-CDS-L-elsbetiae_contig177:22473..22623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 22474..22623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5016.1prot_L-elsbetiae_contig177.5016.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 22474..22623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5016.1

>prot_L-elsbetiae_contig177.5016.1 ID=prot_L-elsbetiae_contig177.5016.1|Name=mRNA_L-elsbetiae_contig177.5016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MKKEQVTFLATIGLVCTGLSQLRDDDPMRAQFGPVTAYQMSHFVMYLSI*
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mRNA from alignment at L-elsbetiae_contig177:22196..22623-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5016.1 ID=mRNA_L-elsbetiae_contig177.5016.1|Name=mRNA_L-elsbetiae_contig177.5016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=428bp|location=Sequence derived from alignment at L-elsbetiae_contig177:22196..22623- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGGAACAGGTCACGTTTTTGGCAACGATAGGGTTGGTTTGTAC
AGGTCTATCACAATTGAGGGACGATGATCCTATGAGAGCCCAGTTCGGAC
CAGTTACCGCTTATCAAATGAGCCACTTCGTCATGTATTTATCTATATAG
GGTACGTCGATTTTCTAAAAATAGAAGAGGTCGTAGTTGCTTCAATTTTG
TGGGAACTCATCGAATTCGGGTTCGGCAAAGCGTTTAACCAAGAAGATTA
CTGGACGTCCGGAGGGGGTAGTGGTCAGGCCAAAGACTTGGCTTATAATA
TGTCAGGCTACCTTATGGGAGTGGCCCTCGCCAAGAAGGTGCCATGTTCA
CTAAATAATTGTCAAAGAATTATTATTCGAGGGTACGGATCGTTGGCGTT
GGCTATAGTGTTGATGGGATACGTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:22196..22623-

>mRNA_L-elsbetiae_contig177.5016.1 ID=mRNA_L-elsbetiae_contig177.5016.1|Name=mRNA_L-elsbetiae_contig177.5016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig177:22196..22623- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGGAACAGGTCACGTTTTTGGCAACGATAGGGTTGGTTTGTAC
AGGTCTATCACAATTGAGGGACGATGATCCTATGAGAGCCCAGTTCGGAC
CAGTTACCGCTTATCAAATGAGCCACTTCGTCATGTATTTATCTATATAG
ATGAAGAAGGAACAGGTCACGTTTTTGGCAACGATAGGGTTGGTTTGTAC
AGGTCTATCACAATTGAGGGACGATGATCCTATGAGAGCCCAGTTCGGAC
CAGTTACCGCTTATCAAATGAGCCACTTCGTCATGTATTTATCTATATAG
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