mRNA_L-elsbetiae_contig177.5015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5015.1
Unique NamemRNA_L-elsbetiae_contig177.5015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5015.1 vs. uniprot
Match: B5LWL4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL4_9PHYC)

HSP 1 Score: 172 bits (437), Expect = 1.630e-48
Identity = 119/310 (38.39%), Postives = 169/310 (54.52%), Query Frame = 1 
Query:    4 RESIIDIASMDEQGVAEMKKFLYEFAETGDILRVTVKLGYEGEKNVVADTVFLENGAHLPTLDTNVFLPYEGGSRRVVYDDIIISSHTFQFIKNNVFVDGEEVVFGTPFMVGGRRVVLAKGSVVLLLEDTLVRVFPESGVQNEVIINN-GTVAVGDVTTTGVFQLGEMKQPSAQNQSSNPNTSNVSYVFFLDKSTDQRVCVLKRTH--MVDFMQTTAKSLLDLGYLHGTLEKVLTYGTQETGIRSVSPGGTESVATIDVQGLAFSSNESAIVIG---EFRLKYDEGSDAVHIQHLDKVSGEYRTKREFGR 915
            + +I+DI++MD + V  MK FLY  A+TGD L V V++    ++ + A   F+EN + L  LD+++FLP+E          + +   T  +   +V VDG  V FGT F++ GRRVVLA+GSVVLL+ED   R FP +GV +EV+ N+   VA G +              S+ NQ S+ +   V+Y F      DQRVCV KRT   + D M   + ++       G L+ V  Y T +  + S + G         V+GL+F S+ +AI+ G   EFR++Y    DAV IQ  D VSG Y TKREFGR
Sbjct:   14 KNAIVDISAMDTESVDSMKSFLYRHAKTGDRLNVNVRVR---DRTLAAQVSFVENQSCLGKLDSSLFLPFEAEKP----SSVRVGKSTIAYENQSVLVDGRVVPFGTEFVLDGRRVVLAEGSVVLLVEDLDTREFPHTGVIDEVLSNDTSAVAFGTIVV------------SSTNQISSEDGEVVAYAFVRSAEDDQRVCVTKRTACLLADGMGEVSCNVRGED---GDLKIVAVYSTADLCLSSTNVG---------VEGLSFDSDNAAIMFGSSGEFRIRYSTDDDAVQIQFKDPVSGSYITKREFGR 292
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BLAST of mRNA_L-elsbetiae_contig177.5015.1 vs. uniprot
Match: Q8QNL6_ESV1K (EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K)

HSP 1 Score: 64.3 bits (155), Expect = 6.440e-8
Identity = 75/338 (22.19%), Postives = 145/338 (42.90%), Query Frame = 1 
Query:    1 MRESIIDIASMDEQGVAEMKKFLYEFAETGDILRVTVKLGYEGEKNVVADTVFLENGAHLPTLDTNVFLPY--EGGSRRVV-------YDDIIISSHTFQFI--------------KNNVFVDGEEVV-FGTPFMVGGRRVVLAKGSVVLLLEDTLVRVFP-ESGVQNEVIINNGTVAVGDVTTTGVFQLGEMKQPSAQNQSSNPNTSNVSYVFFLDKSTDQRVCVLKRTHMVDFMQTTAKSLLDLGYLHGT------LEKVLTYGTQETGIRSVSPGGTESVATIDVQGLAFSSNESAIVIG---EFRLKYDEGSDA-VHIQHLDKVSGEYRTKREF 909
            + +   D    D+       K+  +  + GD +  +V L  +G    +      E        D N+FLP+  + GS +VV        DD+  ++ +   +              +++ F  G  V   G  F + G+ V +A GS+VL+ EDT+ +V+P  +   + VI   G+    + T   +  +G      ++   ++ +T + S+V+  D  TD      +  H +D  + +A   + +G  H        +E V+T  +  T I +          TID  G++F ++++ I  G   +FR+ + +G+ + + I+  D  +G Y T+ EF
Sbjct:   93 LEDGTYDATQFDKSVHDVFLKYFNDIVQNGDTIYASVIL--KGAPKNIETRAVTEGSTTDVVGDQNLFLPFSRDSGSAQVVTLSNSIPIDDVEATAVSDVAVAQDLGGDVELLYTPESDTFTIGNNVYGVGDKFNLFGKMVTVADGSIVLVFEDTVAKVYPFNTSTASNVIGTLGSQFAKNYTCNVINVVG------SKTTGASGDTYSSSWVY--DTETDTIAEATRIVHTID--EDSANGTISIGVRHTDANSNTFIEPVVTCASGSTTISAQDDSDNTVSTTIDPTGISFDTDDACIYFGAAQKFRIIFRDGTPSTLAIESYDADTGTYMTRSEF 418
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWL4_9PHYC1.630e-4838.39Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNL6_ESV1K6.440e-822.19EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:19716..20633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size918
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.0050368-CDS-L-elsbetiae_contig177:19715..206331622815738.0050368-CDS-L-elsbetiae_contig177:19715..20633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 19716..20633 -
1691683070.494564-CDS-L-elsbetiae_contig177:19715..206331691683070.494564-CDS-L-elsbetiae_contig177:19715..20633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 19716..20633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5015.1prot_L-elsbetiae_contig177.5015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 19716..20633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5015.1

>prot_L-elsbetiae_contig177.5015.1 ID=prot_L-elsbetiae_contig177.5015.1|Name=mRNA_L-elsbetiae_contig177.5015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
MRESIIDIASMDEQGVAEMKKFLYEFAETGDILRVTVKLGYEGEKNVVAD
TVFLENGAHLPTLDTNVFLPYEGGSRRVVYDDIIISSHTFQFIKNNVFVD
GEEVVFGTPFMVGGRRVVLAKGSVVLLLEDTLVRVFPESGVQNEVIINNG
TVAVGDVTTTGVFQLGEMKQPSAQNQSSNPNTSNVSYVFFLDKSTDQRVC
VLKRTHMVDFMQTTAKSLLDLGYLHGTLEKVLTYGTQETGIRSVSPGGTE
SVATIDVQGLAFSSNESAIVIGEFRLKYDEGSDAVHIQHLDKVSGEYRTK
REFGR*
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mRNA from alignment at L-elsbetiae_contig177:19716..20633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5015.1 ID=mRNA_L-elsbetiae_contig177.5015.1|Name=mRNA_L-elsbetiae_contig177.5015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig177:19716..20633- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGAATCTATAATCGACATCGCCTCGATGGATGAACAGGGAGTGGC
GGAGATGAAGAAGTTTTTGTATGAGTTCGCCGAAACAGGCGATATACTGC
GTGTTACGGTCAAATTAGGGTACGAAGGCGAAAAAAACGTTGTCGCCGAT
ACCGTATTTTTGGAGAACGGAGCTCATCTCCCGACCCTTGACACCAACGT
TTTCCTCCCTTACGAAGGGGGTAGTCGCAGAGTCGTTTATGACGACATCA
TTATTTCTTCTCACACTTTTCAGTTTATCAAAAATAACGTTTTCGTTGAC
GGTGAAGAGGTCGTTTTCGGCACACCCTTTATGGTAGGTGGGCGTCGAGT
GGTTCTTGCCAAGGGTTCGGTCGTGCTCTTGCTGGAAGATACTTTGGTGA
GAGTTTTTCCCGAAAGTGGTGTTCAAAATGAAGTAATTATTAACAACGGA
ACTGTAGCCGTGGGTGACGTGACGACTACTGGCGTGTTTCAACTAGGTGA
GATGAAACAACCATCGGCTCAAAACCAGAGTTCAAATCCAAATACATCTA
ATGTATCATATGTTTTTTTTCTCGATAAATCTACCGACCAGAGGGTGTGT
GTTCTGAAAAGAACCCACATGGTGGATTTTATGCAAACTACCGCAAAAAG
CCTTCTCGACCTTGGGTACTTACACGGCACGCTGGAAAAGGTCCTAACGT
ACGGAACACAGGAGACTGGTATTCGAAGCGTGTCTCCTGGTGGCACCGAG
TCCGTCGCTACGATTGACGTGCAAGGCCTCGCATTTAGTTCAAACGAAAG
TGCAATCGTAATTGGTGAGTTCAGACTCAAGTATGACGAAGGTTCAGATG
CTGTGCATATTCAACACCTCGACAAAGTTTCTGGAGAGTACAGAACCAAA
CGAGAGTTTGGCAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:19716..20633-

>mRNA_L-elsbetiae_contig177.5015.1 ID=mRNA_L-elsbetiae_contig177.5015.1|Name=mRNA_L-elsbetiae_contig177.5015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig177:19716..20633- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGAATCTATAATCGACATCGCCTCGATGGATGAACAGGGAGTGGC
GGAGATGAAGAAGTTTTTGTATGAGTTCGCCGAAACAGGCGATATACTGC
GTGTTACGGTCAAATTAGGGTACGAAGGCGAAAAAAACGTTGTCGCCGAT
ACCGTATTTTTGGAGAACGGAGCTCATCTCCCGACCCTTGACACCAACGT
TTTCCTCCCTTACGAAGGGGGTAGTCGCAGAGTCGTTTATGACGACATCA
TTATTTCTTCTCACACTTTTCAGTTTATCAAAAATAACGTTTTCGTTGAC
GGTGAAGAGGTCGTTTTCGGCACACCCTTTATGGTAGGTGGGCGTCGAGT
GGTTCTTGCCAAGGGTTCGGTCGTGCTCTTGCTGGAAGATACTTTGGTGA
GAGTTTTTCCCGAAAGTGGTGTTCAAAATGAAGTAATTATTAACAACGGA
ACTGTAGCCGTGGGTGACGTGACGACTACTGGCGTGTTTCAACTAGGTGA
GATGAAACAACCATCGGCTCAAAACCAGAGTTCAAATCCAAATACATCTA
ATGTATCATATGTTTTTTTTCTCGATAAATCTACCGACCAGAGGGTGTGT
GTTCTGAAAAGAACCCACATGGTGGATTTTATGCAAACTACCGCAAAAAG
CCTTCTCGACCTTGGGTACTTACACGGCACGCTGGAAAAGGTCCTAACGT
ACGGAACACAGGAGACTGGTATTCGAAGCGTGTCTCCTGGTGGCACCGAG
TCCGTCGCTACGATTGACGTGCAAGGCCTCGCATTTAGTTCAAACGAAAG
TGCAATCGTAATTGGTGAGTTCAGACTCAAGTATGACGAAGGTTCAGATG
CTGTGCATATTCAACACCTCGACAAAGTTTCTGGAGAGTACAGAACCAAA
CGAGAGTTTGGCAGGTAAATGAGAGAATCTATAATCGACATCGCCTCGAT
GGATGAACAGGGAGTGGCGGAGATGAAGAAGTTTTTGTATGAGTTCGCCG
AAACAGGCGATATACTGCGTGTTACGGTCAAATTAGGGTACGAAGGCGAA
AAAAACGTTGTCGCCGATACCGTATTTTTGGAGAACGGAGCTCATCTCCC
GACCCTTGACACCAACGTTTTCCTCCCTTACGAAGGGGGTAGTCGCAGAG
TCGTTTATGACGACATCATTATTTCTTCTCACACTTTTCAGTTTATCAAA
AATAACGTTTTCGTTGACGGTGAAGAGGTCGTTTTCGGCACACCCTTTAT
GGTAGGTGGGCGTCGAGTGGTTCTTGCCAAGGGTTCGGTCGTGCTCTTGC
TGGAAGATACTTTGGTGAGAGTTTTTCCCGAAAGTGGTGTTCAAAATGAA
GTAATTATTAACAACGGAACTGTAGCCGTGGGTGACGTGACGACTACTGG
CGTGTTTCAACTAGGTGAGATGAAACAACCATCGGCTCAAAACCAGAGTT
CAAATCCAAATACATCTAATGTATCATATGTTTTTTTTCTCGATAAATCT
ACCGACCAGAGGGTGTGTGTTCTGAAAAGAACCCACATGGTGGATTTTAT
GCAAACTACCGCAAAAAGCCTTCTCGACCTTGGGTACTTACACGGCACGC
TGGAAAAGGTCCTAACGTACGGAACACAGGAGACTGGTATTCGAAGCGTG
TCTCCTGGTGGCACCGAGTCCGTCGCTACGATTGACGTGCAAGGCCTCGC
ATTTAGTTCAAACGAAAGTGCAATCGTAATTGGTGAGTTCAGACTCAAGT
ATGACGAAGGTTCAGATGCTGTGCATATTCAACACCTCGACAAAGTTTCT
GGAGAGTACAGAACCAAACGAGAGTTTGGCAGGTAA
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