mRNA_L-elsbetiae_contig177.5014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5014.1
Unique NamemRNA_L-elsbetiae_contig177.5014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5014.1 vs. uniprot
Match: B5LWL3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL3_9PHYC)

HSP 1 Score: 278 bits (711), Expect = 9.870e-88
Identity = 165/383 (43.08%), Postives = 230/383 (60.05%), Query Frame = 1 
Query:    1 MSLKYFARYRFNSN-DVAEEDFGIRDLAVESGSIDTVDDSQHGSCLSLDGTTSLLSTGGFANIADGADRAFSLWAKITTVEATTNQDDSRSGQRRPSPVLCYGELASPNAFVLYACNTEGYPEFYDYHTSRFKISGDVIKNDKWTFLTFSFKS--QVLTIFADGEEIFSTT-VPLTTGTSDPLRIGTDAQGEYFEGCLLDLRIWESALEASVVDYMFSVGPNFDEQLPSPYVEKQFSRSSVVAGNILCRTMYGVQTKGDKLTESFFCVNENAEPKEAVRIEHSQDDYGIASQTVRVRDG-GVLRKTIEISPENTTF-SSTSSSVVFSAEGVHLLNGGQDLEKGCIFFGAGRDFRMRVGDGSFLIEAYSSETGGYRTKMEISSL 1131
            MSL YFARYRFN   D+A+ED G+ DL VE+GS+ +V+D +HG+ L LDG TSL S G F +I D + R FS WA   +  A              SPV+ YGEL S  AFV+YA N    PEFYDY T R   SG   +   W    F++ +  +V+ I+ DG  +   T V LTTG SDPLRIGTD  GEYFEG L+D+R++   + +S V  ++  GPN+ ++L         +RS   AG+++CRTM+GV   G  +++++F    ++   E  R+E   DD G A + V VRDG G L K ++ +  NTTF ++   SV+FS+EGVHL    +D E+GC++FG  R FR+R    SFL+EA +++   Y  KME+SS+
Sbjct:    1 MSLGYFARYRFNDPLDLAKEDLGVGDLVVETGSLQSVEDPRHGTVLYLDGATSLASLGDFGDIVDDSSRCFSFWANCDSEFA--------------SPVVSYGELESSRAFVVYAKNDLSQPEFYDYQT-RVSPSGSDTEQSGWHHFAFTYSADDKVIQIYLDGSLVLQETGVTLTTGASDPLRIGTDGLGEYFEGSLVDIRVFSKNVASSTVLTLYREGPNYLDELGEASFVSSHNRSDAAAGDLVCRTMFGVSPDGQTISQAYF----DSSVGEVARVEDGLDDSGTAYRAVSVRDGDGTLSKVLQFTGNNTTFFNNNKESVIFSSEGVHLA---EDGERGCMYFGNARQFRLRSTGSSFLVEALATQE--YVVKMEVSSV 359
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWL3_9PHYC9.870e-8843.08Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:18545..19678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1134
Cds size1134
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.9637184-CDS-L-elsbetiae_contig177:18544..196781622815737.9637184-CDS-L-elsbetiae_contig177:18544..19678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 18545..19678 +
1691683070.4828377-CDS-L-elsbetiae_contig177:18544..196781691683070.4828377-CDS-L-elsbetiae_contig177:18544..19678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 18545..19678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5014.1prot_L-elsbetiae_contig177.5014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 18545..19678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5014.1

>prot_L-elsbetiae_contig177.5014.1 ID=prot_L-elsbetiae_contig177.5014.1|Name=mRNA_L-elsbetiae_contig177.5014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp
MSLKYFARYRFNSNDVAEEDFGIRDLAVESGSIDTVDDSQHGSCLSLDGT
TSLLSTGGFANIADGADRAFSLWAKITTVEATTNQDDSRSGQRRPSPVLC
YGELASPNAFVLYACNTEGYPEFYDYHTSRFKISGDVIKNDKWTFLTFSF
KSQVLTIFADGEEIFSTTVPLTTGTSDPLRIGTDAQGEYFEGCLLDLRIW
ESALEASVVDYMFSVGPNFDEQLPSPYVEKQFSRSSVVAGNILCRTMYGV
QTKGDKLTESFFCVNENAEPKEAVRIEHSQDDYGIASQTVRVRDGGVLRK
TIEISPENTTFSSTSSSVVFSAEGVHLLNGGQDLEKGCIFFGAGRDFRMR
VGDGSFLIEAYSSETGGYRTKMEISSL*
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mRNA from alignment at L-elsbetiae_contig177:18545..19678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5014.1 ID=mRNA_L-elsbetiae_contig177.5014.1|Name=mRNA_L-elsbetiae_contig177.5014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig177:18545..19678+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTAAAATACTTTGCAAGGTACAGATTTAATAGTAATGACGTCGC
AGAAGAAGACTTTGGTATCAGAGATCTCGCCGTTGAGTCAGGATCGATAG
ACACGGTGGATGACTCCCAGCACGGTTCCTGCCTTTCTCTCGATGGTACA
ACTTCCCTTTTGTCCACGGGTGGTTTCGCCAACATCGCCGACGGCGCCGA
CAGAGCCTTCTCGTTATGGGCGAAAATTACTACTGTAGAGGCCACCACGA
ATCAAGATGATTCCCGGTCCGGCCAAAGACGGCCCAGCCCAGTACTGTGC
TACGGAGAACTCGCGTCACCCAATGCGTTTGTCTTGTATGCGTGTAATAC
AGAGGGATACCCAGAGTTTTACGACTACCATACCAGTAGGTTTAAAATTT
CAGGGGACGTCATTAAGAATGACAAGTGGACTTTTCTTACGTTTTCGTTC
AAGTCCCAGGTGCTAACTATTTTCGCCGACGGCGAAGAAATATTTTCGAC
CACTGTCCCCCTCACCACAGGAACAAGCGATCCGCTGCGGATTGGTACCG
ACGCGCAAGGAGAATACTTTGAAGGATGTCTCTTGGACCTACGCATATGG
GAATCCGCGTTGGAAGCCTCAGTGGTGGATTACATGTTTTCCGTGGGTCC
AAACTTTGACGAACAACTACCGTCTCCCTACGTCGAAAAACAATTTAGCA
GGTCGTCGGTCGTGGCTGGAAACATTTTGTGTAGAACCATGTACGGTGTA
CAAACCAAGGGTGACAAACTCACCGAATCTTTTTTTTGCGTCAACGAAAA
TGCCGAGCCTAAGGAGGCAGTGCGTATCGAGCACTCCCAGGATGACTACG
GAATTGCTTCACAGACGGTCCGCGTCCGAGATGGCGGCGTTCTACGTAAA
ACAATTGAAATATCTCCGGAAAATACTACGTTTTCATCGACGTCAAGTTC
CGTCGTATTTTCGGCAGAAGGGGTGCATCTTTTAAACGGTGGCCAGGACC
TAGAGAAGGGATGTATCTTCTTCGGAGCAGGCAGAGATTTCAGAATGAGG
GTAGGGGACGGAAGTTTCCTGATCGAAGCATATTCGTCAGAGACAGGGGG
TTACCGGACGAAGATGGAAATTTCTTCTTTATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:18545..19678+

>mRNA_L-elsbetiae_contig177.5014.1 ID=mRNA_L-elsbetiae_contig177.5014.1|Name=mRNA_L-elsbetiae_contig177.5014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2268bp|location=Sequence derived from alignment at L-elsbetiae_contig177:18545..19678+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTAAAATACTTTGCAAGGTACAGATTTAATAGTAATGACGTCGC
AGAAGAAGACTTTGGTATCAGAGATCTCGCCGTTGAGTCAGGATCGATAG
ACACGGTGGATGACTCCCAGCACGGTTCCTGCCTTTCTCTCGATGGTACA
ACTTCCCTTTTGTCCACGGGTGGTTTCGCCAACATCGCCGACGGCGCCGA
CAGAGCCTTCTCGTTATGGGCGAAAATTACTACTGTAGAGGCCACCACGA
ATCAAGATGATTCCCGGTCCGGCCAAAGACGGCCCAGCCCAGTACTGTGC
TACGGAGAACTCGCGTCACCCAATGCGTTTGTCTTGTATGCGTGTAATAC
AGAGGGATACCCAGAGTTTTACGACTACCATACCAGTAGGTTTAAAATTT
CAGGGGACGTCATTAAGAATGACAAGTGGACTTTTCTTACGTTTTCGTTC
AAGTCCCAGGTGCTAACTATTTTCGCCGACGGCGAAGAAATATTTTCGAC
CACTGTCCCCCTCACCACAGGAACAAGCGATCCGCTGCGGATTGGTACCG
ACGCGCAAGGAGAATACTTTGAAGGATGTCTCTTGGACCTACGCATATGG
GAATCCGCGTTGGAAGCCTCAGTGGTGGATTACATGTTTTCCGTGGGTCC
AAACTTTGACGAACAACTACCGTCTCCCTACGTCGAAAAACAATTTAGCA
GGTCGTCGGTCGTGGCTGGAAACATTTTGTGTAGAACCATGTACGGTGTA
CAAACCAAGGGTGACAAACTCACCGAATCTTTTTTTTGCGTCAACGAAAA
TGCCGAGCCTAAGGAGGCAGTGCGTATCGAGCACTCCCAGGATGACTACG
GAATTGCTTCACAGACGGTCCGCGTCCGAGATGGCGGCGTTCTACGTAAA
ACAATTGAAATATCTCCGGAAAATACTACGTTTTCATCGACGTCAAGTTC
CGTCGTATTTTCGGCAGAAGGGGTGCATCTTTTAAACGGTGGCCAGGACC
TAGAGAAGGGATGTATCTTCTTCGGAGCAGGCAGAGATTTCAGAATGAGG
GTAGGGGACGGAAGTTTCCTGATCGAAGCATATTCGTCAGAGACAGGGGG
TTACCGGACGAAGATGGAAATTTCTTCTTTATAAATGTCTCTAAAATACT
TTGCAAGGTACAGATTTAATAGTAATGACGTCGCAGAAGAAGACTTTGGT
ATCAGAGATCTCGCCGTTGAGTCAGGATCGATAGACACGGTGGATGACTC
CCAGCACGGTTCCTGCCTTTCTCTCGATGGTACAACTTCCCTTTTGTCCA
CGGGTGGTTTCGCCAACATCGCCGACGGCGCCGACAGAGCCTTCTCGTTA
TGGGCGAAAATTACTACTGTAGAGGCCACCACGAATCAAGATGATTCCCG
GTCCGGCCAAAGACGGCCCAGCCCAGTACTGTGCTACGGAGAACTCGCGT
CACCCAATGCGTTTGTCTTGTATGCGTGTAATACAGAGGGATACCCAGAG
TTTTACGACTACCATACCAGTAGGTTTAAAATTTCAGGGGACGTCATTAA
GAATGACAAGTGGACTTTTCTTACGTTTTCGTTCAAGTCCCAGGTGCTAA
CTATTTTCGCCGACGGCGAAGAAATATTTTCGACCACTGTCCCCCTCACC
ACAGGAACAAGCGATCCGCTGCGGATTGGTACCGACGCGCAAGGAGAATA
CTTTGAAGGATGTCTCTTGGACCTACGCATATGGGAATCCGCGTTGGAAG
CCTCAGTGGTGGATTACATGTTTTCCGTGGGTCCAAACTTTGACGAACAA
CTACCGTCTCCCTACGTCGAAAAACAATTTAGCAGGTCGTCGGTCGTGGC
TGGAAACATTTTGTGTAGAACCATGTACGGTGTACAAACCAAGGGTGACA
AACTCACCGAATCTTTTTTTTGCGTCAACGAAAATGCCGAGCCTAAGGAG
GCAGTGCGTATCGAGCACTCCCAGGATGACTACGGAATTGCTTCACAGAC
GGTCCGCGTCCGAGATGGCGGCGTTCTACGTAAAACAATTGAAATATCTC
CGGAAAATACTACGTTTTCATCGACGTCAAGTTCCGTCGTATTTTCGGCA
GAAGGGGTGCATCTTTTAAACGGTGGCCAGGACCTAGAGAAGGGATGTAT
CTTCTTCGGAGCAGGCAGAGATTTCAGAATGAGGGTAGGGGACGGAAGTT
TCCTGATCGAAGCATATTCGTCAGAGACAGGGGGTTACCGGACGAAGATG
GAAATTTCTTCTTTATAA
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