mRNA_L-elsbetiae_contig177.5009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5009.1
Unique NamemRNA_L-elsbetiae_contig177.5009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5009.1 vs. uniprot
Match: B5LWL2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL2_9PHYC)

HSP 1 Score: 151 bits (381), Expect = 3.760e-39
Identity = 88/228 (38.60%), Postives = 137/228 (60.09%), Query Frame = 1 
Query:  481 SQNSHDHGITSASKSNITRLVEEFKREAKEFRPNDAVVEEAITTCKEVQSRADNSISTDTLANAHRAIVSLCPDEFYSETGVSQSQILDMVMWKISTIADTSVQNGLKETLCKRLSSGVENGNVVCGTGKVSRIISVFEGVLEGAQKGISINLVEREIAQLAAKVRHDVL-------------------YASEMSKILRERVQAEYIENLNMEPSVINPLVDVYTHAY 1107
            SQNSHDHG+ +A   N+ +L  +FK  ++EFR  D VV EA+  C  + S  D  ++   +     +I    P  F  +T  +Q  +LDMV+WKI+T+    V++ ++ETL KRL+SGVE  +VVCGTG++ RI+SVFEG  +  QK +SI++V +EIA+ A+++R +VL                    +  MS+ L +  +  YIE+L M P+V+ PL++VY+ A+
Sbjct:  101 SQNSHDHGVVTALVQNLKKLGIDFKSSSREFREADEVVAEAVEFCTSM-SLPDEDVNK--ILRVLHSISQTDPSRF-RDTDFTQINVLDMVLWKIATVNPDDVRSNMRETLLKRLASGVEGDSVVCGTGRMGRILSVFEGT-DNFQKSVSIDVVSQEIARAASRIRSEVLDRATKEERQAYENGTSPDPISKTMSEKLGDEARKLYIEDLKMHPNVVEPLLEVYSGAF 323
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BLAST of mRNA_L-elsbetiae_contig177.5009.1 vs. uniprot
Match: Q6XM40_9PHYC (FirrV-1-A47 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM40_9PHYC)

HSP 1 Score: 145 bits (365), Expect = 5.670e-37
Identity = 80/210 (38.10%), Postives = 126/210 (60.00%), Query Frame = 1 
Query:  484 QNSHDHGITSASKSNITRLVEEFKREAKEFRPNDAVVEEAITTCKEVQSRADNSISTDTLANAHRAIVSLCPDEFYSETGVSQSQILDMVMWKISTIADTSVQNGLKETLCKRLSSGVENGNVVCGTGKVSRIISVFEGV--LEGAQKGISINLVEREIAQLAAKVRHDVLYASEMSKILRERVQAEYIENLNMEPSVINPLVDVYTHAY 1107
            Q +HDHG  +A + N+  + EEF++ +  FR +D V+ EA+  C   Q+       TD +     AI S   DE +  + +SQ  I+DMVMW+IS I D +++  ++E LC ++ S  ENG+VVC TG+++R+++VFEGV   +  QKG+ ++   +EIA +AAK R  VL  +E     R+ V   Y+E+L  E SVI+P+V+ Y   +
Sbjct:  102 QTAHDHGTVAALRKNVRFIQEEFEKASGTFRTHDEVISEALALC--TQNPRWREKETDAMRQVLNAIQST-GDEAFMGSSLSQVNIMDMVMWRISRITDPTLRANVEENLCIQILSCYENGHVVCTTGRMTRLVAVFEGVPGFDAYQKGVLLSTARKEIATIAAKTRDRVLENNEHVACFRDEVHKTYVEDLGFEKSVIDPIVNEYAEYF 308
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BLAST of mRNA_L-elsbetiae_contig177.5009.1 vs. uniprot
Match: A0A250XJZ3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJZ3_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 3.810e-10
Identity = 55/189 (29.10%), Postives = 94/189 (49.74%), Query Frame = 1 
Query:  484 QNSHDHGITSASKSNITRLVEEFKREAKEFRPNDAVVEEAITTCKEVQSRADNSISTDTLANAHRAIVSLCPDEFYSETGVSQSQILDMVMWKISTIADTS-VQNGLKETLCKRLSSGVENGNVVCGTGKVSRIISVFEGVLEGAQKGISINLVEREIAQLAAKVRHDVLYASEMSKILRERVQAEYIE 1047
            QN HDHG+   +  N+  +  + +R +     NDA+ +   +  K   S  +         NA R + SL  +  +++ G S+++ L  V W +   +DT  ++  L+E L K+L++GVE+G+VVC TGK++RI S  EG   G      +  +  E+  LAAK R   L    + ++     + E I+
Sbjct:   91 QNVHDHGVVQTTAKNLDLIPSDPRRSS-----NDAIAQVMDSVLKSDMSVCERE-------NAIRVLDSLSTN-VHTKFGRSEAKTLADV-WDVIRRSDTEQLRKNLEENLVKQLATGVEDGSVVCSTGKIARITSSLEGSGLGLTTMRPLWAIRDELGTLAAKTRDQALLFERIKRLRASDKEKEQIK 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWL2_9PHYC3.760e-3938.60Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM40_9PHYC5.670e-3738.10FirrV-1-A47 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A250XJZ3_9CHLO3.810e-1029.10Uncharacterized protein (Fragment) n=1 Tax=Chlamyd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:5105..6274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1110
Cds size1110
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.7372515-CDS-L-elsbetiae_contig177:5104..60941622815737.7372515-CDS-L-elsbetiae_contig177:5104..6094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 5105..6094 +
1691683070.3917987-CDS-L-elsbetiae_contig177:5104..60941691683070.3917987-CDS-L-elsbetiae_contig177:5104..6094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 5105..6094 +
1622815737.7507095-CDS-L-elsbetiae_contig177:6154..62741622815737.7507095-CDS-L-elsbetiae_contig177:6154..6274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 6155..6274 +
1691683070.4051285-CDS-L-elsbetiae_contig177:6154..62741691683070.4051285-CDS-L-elsbetiae_contig177:6154..6274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 6155..6274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5009.1prot_L-elsbetiae_contig177.5009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 5105..6274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5009.1

>prot_L-elsbetiae_contig177.5009.1 ID=prot_L-elsbetiae_contig177.5009.1|Name=mRNA_L-elsbetiae_contig177.5009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=370bp
MDGLVRNFVVHGNEKIIRWESLVDMGDVYARGFFPYFLPNINVALDCYEV
GTRCPDAKVRGNAEAKMTSIESSPMSEKDQQGRRIHVRYGESIIKLAEKY
ILETKKRQLLEKHQTDLEKRNNENRKKTNKDSRRRRLVGNKSTNRLNMET
QRRLERIGGGSQNSHDHGITSASKSNITRLVEEFKREAKEFRPNDAVVEE
AITTCKEVQSRADNSISTDTLANAHRAIVSLCPDEFYSETGVSQSQILDM
VMWKISTIADTSVQNGLKETLCKRLSSGVENGNVVCGTGKVSRIISVFEG
VLEGAQKGISINLVEREIAQLAAKVRHDVLYASEMSKILRERVQAEYIEN
LNMEPSVINPLVDVYTHAY*
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mRNA from alignment at L-elsbetiae_contig177:5105..6274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5009.1 ID=mRNA_L-elsbetiae_contig177.5009.1|Name=mRNA_L-elsbetiae_contig177.5009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig177:5105..6274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGGTTAGTTCGAAATTTCGTCGTCCACGGCAATGAGAAAATAAT
TCGCTGGGAGAGTCTTGTAGACATGGGGGACGTATACGCCAGAGGGTTCT
TCCCGTACTTTTTACCCAATATCAATGTTGCACTCGATTGTTACGAAGTG
GGGACGAGGTGCCCCGACGCCAAAGTTCGTGGAAACGCTGAGGCTAAAAT
GACTTCCATAGAGTCTAGTCCGATGTCGGAGAAAGACCAACAGGGTAGAC
GTATACATGTTCGTTACGGCGAGTCAATCATTAAACTCGCAGAGAAGTAC
ATACTCGAGACCAAAAAACGTCAACTTCTGGAGAAACACCAGACGGATTT
AGAGAAACGCAACAACGAAAATCGAAAGAAAACTAACAAAGACAGTAGGA
GGAGGAGATTAGTGGGTAATAAAAGTACTAATCGTCTCAATATGGAAACC
CAGCGTAGACTAGAGAGAATAGGTGGAGGATCACAGAATTCTCACGACCA
CGGTATAACGTCGGCATCGAAATCAAATATCACGAGATTGGTAGAAGAAT
TCAAGCGAGAAGCAAAGGAGTTTCGCCCCAACGACGCTGTCGTTGAAGAA
GCAATCACTACATGTAAGGAGGTTCAATCCCGTGCCGACAATTCCATTTC
TACAGACACTCTCGCGAACGCACATCGTGCAATAGTCTCGCTTTGCCCAG
ACGAGTTTTATTCCGAAACCGGTGTGTCTCAGAGCCAAATCCTAGATATG
GTAATGTGGAAAATATCAACTATCGCAGATACTTCGGTGCAGAATGGTCT
GAAAGAAACATTGTGCAAAAGACTGTCGAGTGGTGTGGAAAATGGGAATG
TAGTGTGTGGGACAGGAAAAGTTTCGCGCATTATATCCGTATTCGAAGGA
GTGCTAGAAGGCGCGCAAAAGGGTATATCAATAAATCTTGTCGAGCGCGA
AATTGCACAACTGGCAGCGAAAGTGCGGCACGACGTCCTCGTTTCCATCG
GACCAGTCGGGCGCAAGGCATACGAGACCGGTAACAACGCGAAATCTGAG
TACGCCTCAGAAATGTCCAAAATTCTGCGAGAAAGGGTTCAAGCGGAGTA
TATAGAAAATCTGAATATGGAACCGAGTGTTATCAATCCTCTCGTAGACG
TCTACACCCACGCGTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:5105..6274+

>mRNA_L-elsbetiae_contig177.5009.1 ID=mRNA_L-elsbetiae_contig177.5009.1|Name=mRNA_L-elsbetiae_contig177.5009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2220bp|location=Sequence derived from alignment at L-elsbetiae_contig177:5105..6274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGGTTAGTTCGAAATTTCGTCGTCCACGGCAATGAGAAAATAAT
TCGCTGGGAGAGTCTTGTAGACATGGGGGACGTATACGCCAGAGGGTTCT
TCCCGTACTTTTTACCCAATATCAATGTTGCACTCGATTGTTACGAAGTG
GGGACGAGGTGCCCCGACGCCAAAGTTCGTGGAAACGCTGAGGCTAAAAT
GACTTCCATAGAGTCTAGTCCGATGTCGGAGAAAGACCAACAGGGTAGAC
GTATACATGTTCGTTACGGCGAGTCAATCATTAAACTCGCAGAGAAGTAC
ATACTCGAGACCAAAAAACGTCAACTTCTGGAGAAACACCAGACGGATTT
AGAGAAACGCAACAACGAAAATCGAAAGAAAACTAACAAAGACAGTAGGA
GGAGGAGATTAGTGGGTAATAAAAGTACTAATCGTCTCAATATGGAAACC
CAGCGTAGACTAGAGAGAATAGGTGGAGGATCACAGAATTCTCACGACCA
CGGTATAACGTCGGCATCGAAATCAAATATCACGAGATTGGTAGAAGAAT
TCAAGCGAGAAGCAAAGGAGTTTCGCCCCAACGACGCTGTCGTTGAAGAA
GCAATCACTACATGTAAGGAGGTTCAATCCCGTGCCGACAATTCCATTTC
TACAGACACTCTCGCGAACGCACATCGTGCAATAGTCTCGCTTTGCCCAG
ACGAGTTTTATTCCGAAACCGGTGTGTCTCAGAGCCAAATCCTAGATATG
GTAATGTGGAAAATATCAACTATCGCAGATACTTCGGTGCAGAATGGTCT
GAAAGAAACATTGTGCAAAAGACTGTCGAGTGGTGTGGAAAATGGGAATG
TAGTGTGTGGGACAGGAAAAGTTTCGCGCATTATATCCGTATTCGAAGGA
GTGCTAGAAGGCGCGCAAAAGGGTATATCAATAAATCTTGTCGAGCGCGA
AATTGCACAACTGGCAGCGAAAGTGCGGCACGACGTCCTCATGGATGGGT
TAGTTCGAAATTTCGTCGTCCACGGCAATGAGAAAATAATTCGCTGGGAG
AGTCTTGTAGACATGGGGGACGTATACGCCAGAGGGTTCTTCCCGTACTT
TTTACCCAATATCAATGTTGCACTCGATTGTTACGAAGTGGGGACGAGGT
GCCCCGACGCCAAAGTTCGTGGAAACGCTGAGGCTAAAATGACTTCCATA
GAGTCTAGTCCGATGTCGGAGAAAGACCAACAGGGTAGACGTATACATGT
TCGTTACGGCGAGTCAATCATTAAACTCGCAGAGAAGTACATACTCGAGA
CCAAAAAACGTCAACTTCTGGAGAAACACCAGACGGATTTAGAGAAACGC
AACAACGAAAATCGAAAGAAAACTAACAAAGACAGTAGGAGGAGGAGATT
AGTGGGTAATAAAAGTACTAATCGTCTCAATATGGAAACCCAGCGTAGAC
TAGAGAGAATAGGTGGAGGATCACAGAATTCTCACGACCACGGTATAACG
TCGGCATCGAAATCAAATATCACGAGATTGGTAGAAGAATTCAAGCGAGA
AGCAAAGGAGTTTCGCCCCAACGACGCTGTCGTTGAAGAAGCAATCACTA
CATGTAAGGAGGTTCAATCCCGTGCCGACAATTCCATTTCTACAGACACT
CTCGCGAACGCACATCGTGCAATAGTCTCGCTTTGCCCAGACGAGTTTTA
TTCCGAAACCGGTGTGTCTCAGAGCCAAATCCTAGATATGGTAATGTGGA
AAATATCAACTATCGCAGATACTTCGGTGCAGAATGGTCTGAAAGAAACA
TTGTGCAAAAGACTGTCGAGTGGTGTGGAAAATGGGAATGTAGTGTGTGG
GACAGGAAAAGTTTCGCGCATTATATCCGTATTCGAAGGAGTGCTAGAAG
GCGCGCAAAAGGGTATATCAATAAATCTTGTCGAGCGCGAAATTGCACAA
CTGGCAGCGAAAGTGCGGCACGACGTCCTCTACGCCTCAGAAATGTCCAA
AATTCTGCGAGAAAGGGTTCAAGCGGAGTATATAGAAAATCTGAATATGG
AACCGAGTGTTATCAATCCTCTCGTAGACGTCTACACCCACGCGTACTGA
TACGCCTCAGAAATGTCCAAAATTCTGCGAGAAAGGGTTCAAGCGGAGTA
TATAGAAAATCTGAATATGGAACCGAGTGTTATCAATCCTCTCGTAGACG
TCTACACCCACGCGTACTGA
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