mRNA_L-elsbetiae_contig177.5008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5008.1
Unique NamemRNA_L-elsbetiae_contig177.5008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5008.1 vs. uniprot
Match: A0A6C0F9T4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F9T4_9ZZZZ)

HSP 1 Score: 103 bits (258), Expect = 3.660e-24
Identity = 73/198 (36.87%), Postives = 98/198 (49.49%), Query Frame = 1 
Query:   19 NLTTLEWLVHKYVMHGYDRVNFPIVGKIIDKESSLHWDHHHQVMSDMSLDVEGDLKPNFHGLFFRYKATMIFTIILFVILSIQFRALKLGVSCKVTAFIGLSST--IIYSFLWNNFHALLHGANDVIIPGGEGVSNKYQNTVVNWVPKIWFEWMMLNHAQHHAVKGPSKGNYNIILPGFDYLVGTYRIPPCFDNTEYC 606
            +L+  EWL+HKY+MH  +       G+ I  E   H  HH+QV SDM+L  EG+      GL+F    T   ++ + VI  I    +     CK+T   G+S    + Y F+W+  H   H   D              N  +N +   +F W   NHA HH VKG +KGNYNII+PG D+L GTYR   C  N EYC
Sbjct:   16 SLSIGEWLMHKYIMHNTEGS----FGRFILGEQ--HIIHHNQVNSDMTLK-EGE---EHIGLYFGVWETFWISVAIMVIQRIIMYIINFD--CKITYSFGISLAGGLFYKFMWDYLHYSFHDLTD--------------NLEINKL-NPYFYWWFKNHAYHHLVKGEAKGNYNIIVPGADFLFGTYR--SCVTNKEYC 184
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BLAST of mRNA_L-elsbetiae_contig177.5008.1 vs. uniprot
Match: A0A2E7W294_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7W294_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 6.580e-16
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:  319 LSSTIIYSFLWNNFHALLHGANDVIIPGGEGVSNKYQNTVVNWVPKIWFEWMMLNHAQHHAVKGPSKGNYNIILPGFDYLVGTYRIPPCFDNTEYC 606
            ++  + Y F+W+  H   H  N++                  W     F W   NH+ HH VKG  KGNYNIILPG D+++GTYR   C DNTEYC
Sbjct:    7 MAIALFYKFMWDWLHYAFHQINELD----------------RWKTNPVFYWYFRNHSYHHLVKGKQKGNYNIILPGGDHILGTYR--SCIDNTEYC 84
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BLAST of mRNA_L-elsbetiae_contig177.5008.1 vs. uniprot
Match: A0A6C0B4T8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B4T8_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 1.300e-14
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 1 
Query:  115 SSLHWDHHHQVMSDMSLDVEGDLKPN---FHGLFFRYKATM-IFTI--ILFVILSIQFRALKLGVSCKVTAFIGLSSTIIYSFLWNNFHALLHGANDVI-----IPGGEGVSNKYQNTVVNWVPKIWFEWMMLNHAQHHAVKGPSKGNYNIILPGFDYLVG 564
            S  HW HH   + DM+L    +   +   + GLFF +  T+ +FT+  I    LSI F A+ + +S        L+     S  WN  H  +H   + +     IPG +   + +++  ++   K  ++W+  NH  HH  KGP KGNYN+ LPG D+L G
Sbjct:    9 SKDHWTHHQHTLDDMTLKQSNNYNEDVNKYFGLFFVWPYTVGVFTVGFIEAYGLSIVFNAVNMNISLLAVLLYVLAFCFYQSSFWNTIHPDIHFITEKLSWSEGIPGSDIWKSIFESIPMDG-NKNAYDWLKDNHIMHHIRKGPKKGNYNVTLPGADWLFG 168
[Close]
BLAST of mRNA_L-elsbetiae_contig177.5008.1 vs. uniprot
Match: A0A6C0AVF1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AVF1_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 2.210e-5
Identity = 26/84 (30.95%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  331 IIYSFL-WNNFHALLHGANDVIIPGGEGVSNKYQNTVVNWVPKI--WFEWMMLNHAQHHAVKGPSKGNYNIILPGFDYLVGTYR 573
            I+Y+ + WN+ H  +H        G +            ++ K   + +W++ NH +HH  KG +KGNYNI +PG D++  TY 
Sbjct:  114 ILYAIIMWNSIHPYIHKK-----CGRDYTIFSMPCNFTEYIAKTNSFVKWIIENHTKHHIYKGENKGNYNITIPGADFIYNTYN 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6C0F9T4_9ZZZZ3.660e-2436.87Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A2E7W294_9PROT6.580e-1639.58Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
A0A6C0B4T8_9ZZZZ1.300e-1431.68Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0AVF1_9ZZZZ2.210e-530.95Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:4176..4781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog38833.XP_003063276.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C10X@1,2SNGB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.700037-CDS-L-elsbetiae_contig177:4175..47811622815737.700037-CDS-L-elsbetiae_contig177:4175..4781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 4176..4781 +
1691683070.3800497-CDS-L-elsbetiae_contig177:4175..47811691683070.3800497-CDS-L-elsbetiae_contig177:4175..4781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 4176..4781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5008.1prot_L-elsbetiae_contig177.5008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 4176..4781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5008.1

>prot_L-elsbetiae_contig177.5008.1 ID=prot_L-elsbetiae_contig177.5008.1|Name=mRNA_L-elsbetiae_contig177.5008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
IVVIYANLTTLEWLVHKYVMHGYDRVNFPIVGKIIDKESSLHWDHHHQVM
SDMSLDVEGDLKPNFHGLFFRYKATMIFTIILFVILSIQFRALKLGVSCK
VTAFIGLSSTIIYSFLWNNFHALLHGANDVIIPGGEGVSNKYQNTVVNWV
PKIWFEWMMLNHAQHHAVKGPSKGNYNIILPGFDYLVGTYRIPPCFDNTE
YC
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mRNA from alignment at L-elsbetiae_contig177:4176..4781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5008.1 ID=mRNA_L-elsbetiae_contig177.5008.1|Name=mRNA_L-elsbetiae_contig177.5008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig177:4176..4781+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCGTAATTTACGCCAATCTGACGACATTAGAGTGGTTGGTCCACAA
GTACGTTATGCACGGTTATGACAGAGTGAATTTCCCCATTGTAGGGAAGA
TTATTGATAAGGAGTCATCTCTGCACTGGGATCACCACCACCAGGTTATG
AGTGACATGAGTCTCGACGTCGAAGGCGACTTAAAGCCCAACTTTCATGG
CCTATTTTTCCGATACAAAGCCACGATGATCTTTACTATCATTCTCTTCG
TCATTCTGAGCATCCAGTTCCGCGCGCTGAAACTTGGTGTGAGCTGCAAG
GTTACTGCCTTCATCGGGTTGTCGAGCACGATTATCTACAGCTTCCTCTG
GAACAATTTCCACGCCCTCTTGCACGGGGCAAACGACGTCATTATCCCCG
GAGGAGAAGGTGTATCCAACAAATACCAAAACACCGTTGTGAATTGGGTC
CCCAAGATCTGGTTTGAATGGATGATGCTGAACCACGCACAACACCACGC
CGTCAAGGGACCTTCGAAAGGGAATTATAACATTATTTTACCGGGTTTCG
ACTACCTCGTGGGAACGTATAGAATACCCCCCTGCTTCGACAACACGGAA
TACTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:4176..4781+

>mRNA_L-elsbetiae_contig177.5008.1 ID=mRNA_L-elsbetiae_contig177.5008.1|Name=mRNA_L-elsbetiae_contig177.5008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig177:4176..4781+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCGTAATTTACGCCAATCTGACGACATTAGAGTGGTTGGTCCACAA
GTACGTTATGCACGGTTATGACAGAGTGAATTTCCCCATTGTAGGGAAGA
TTATTGATAAGGAGTCATCTCTGCACTGGGATCACCACCACCAGGTTATG
AGTGACATGAGTCTCGACGTCGAAGGCGACTTAAAGCCCAACTTTCATGG
CCTATTTTTCCGATACAAAGCCACGATGATCTTTACTATCATTCTCTTCG
TCATTCTGAGCATCCAGTTCCGCGCGCTGAAACTTGGTGTGAGCTGCAAG
GTTACTGCCTTCATCGGGTTGTCGAGCACGATTATCTACAGCTTCCTCTG
GAACAATTTCCACGCCCTCTTGCACGGGGCAAACGACGTCATTATCCCCG
GAGGAGAAGGTGTATCCAACAAATACCAAAACACCGTTGTGAATTGGGTC
CCCAAGATCTGGTTTGAATGGATGATGCTGAACCACGCACAACACCACGC
CGTCAAGGGACCTTCGAAAGGGAATTATAACATTATTTTACCGGGTTTCG
ACTACCTCGTGGGAACGTATAGAATACCCCCCTGCTTCGACAACACGGAA
TACTGTATCGTCGTAATTTACGCCAATCTGACGACATTAGAGTGGTTGGT
CCACAAGTACGTTATGCACGGTTATGACAGAGTGAATTTCCCCATTGTAG
GGAAGATTATTGATAAGGAGTCATCTCTGCACTGGGATCACCACCACCAG
GTTATGAGTGACATGAGTCTCGACGTCGAAGGCGACTTAAAGCCCAACTT
TCATGGCCTATTTTTCCGATACAAAGCCACGATGATCTTTACTATCATTC
TCTTCGTCATTCTGAGCATCCAGTTCCGCGCGCTGAAACTTGGTGTGAGC
TGCAAGGTTACTGCCTTCATCGGGTTGTCGAGCACGATTATCTACAGCTT
CCTCTGGAACAATTTCCACGCCCTCTTGCACGGGGCAAACGACGTCATTA
TCCCCGGAGGAGAAGGTGTATCCAACAAATACCAAAACACCGTTGTGAAT
TGGGTCCCCAAGATCTGGTTTGAATGGATGATGCTGAACCACGCACAACA
CCACGCCGTCAAGGGACCTTCGAAAGGGAATTATAACATTATTTTACCGG
GTTTCGACTACCTCGTGGGAACGTATAGAATACCCCCCTGCTTCGACAAC
ACGGAATACTGT
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