mRNA_L-elsbetiae_contig1768.4999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1768.4999.1
Unique NamemRNA_L-elsbetiae_contig1768.4999.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1768.4999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1768contigL-elsbetiae_contig1768:12637..12991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.0093703-UTR-L-elsbetiae_contig1768:12636..126551622815737.0093703-UTR-L-elsbetiae_contig1768:12636..12655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 12637..12655 +
1691683069.9868617-UTR-L-elsbetiae_contig1768:12636..126551691683069.9868617-UTR-L-elsbetiae_contig1768:12636..12655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 12637..12655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.0299673-CDS-L-elsbetiae_contig1768:12655..129911622815737.0299673-CDS-L-elsbetiae_contig1768:12655..12991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 12656..12991 +
1691683069.9972758-CDS-L-elsbetiae_contig1768:12655..129911691683069.9972758-CDS-L-elsbetiae_contig1768:12655..12991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 12656..12991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1768.4999.1prot_L-elsbetiae_contig1768.4999.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1768 12656..12991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1768.4999.1

>prot_L-elsbetiae_contig1768.4999.1 ID=prot_L-elsbetiae_contig1768.4999.1|Name=mRNA_L-elsbetiae_contig1768.4999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MATSPFEELDVSDQTYRAGWLWTKSCPLQESKQGRRTRYFGVCWLVAVRP
LFGVLSRMPAATPGRLASGGLREKQWCIAKMERLVAYSRSSQQVAASSSQ
NQDRGLVVYVRL
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mRNA from alignment at L-elsbetiae_contig1768:12637..12991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1768.4999.1 ID=mRNA_L-elsbetiae_contig1768.4999.1|Name=mRNA_L-elsbetiae_contig1768.4999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=355bp|location=Sequence derived from alignment at L-elsbetiae_contig1768:12637..12991+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTGGTGTGTGTGGGACGATGGCGACCTCCCCGTTCGAAGAATTGGATG
TGAGTGATCAAACGTATCGCGCCGGATGGTTGTGGACGAAGAGCTGTCCT
TTGCAGGAGTCAAAACAAGGCCGCCGAACACGCTACTTTGGTGTGTGTTG
GCTGGTCGCCGTACGTCCGTTGTTCGGCGTCTTGTCTCGGATGCCAGCTG
CAACACCAGGGCGCTTGGCATCAGGCGGGTTACGTGAAAAACAATGGTGT
ATCGCAAAGATGGAAAGGTTGGTAGCATATTCTCGTTCCTCCCAGCAGGT
AGCAGCAAGTAGTAGCCAAAACCAAGACAGGGGGTTGGTTGTGTATGTCA
GACTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1768:12637..12991+

>mRNA_L-elsbetiae_contig1768.4999.1 ID=mRNA_L-elsbetiae_contig1768.4999.1|Name=mRNA_L-elsbetiae_contig1768.4999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1768:12637..12991+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACCTCCCCGTTCGAAGAATTGGATGTGAGTGATCAAACGTATCG
CGCCGGATGGTTGTGGACGAAGAGCTGTCCTTTGCAGGAGTCAAAACAAG
GCCGCCGAACACGCTACTTTGGTGTGTGTTGGCTGGTCGCCGTACGTCCG
TTGTTCGGCGTCTTGTCTCGGATGCCAGCTGCAACACCAGGGCGCTTGGC
ATCAGGCGGGTTACGTGAAAAACAATGGTGTATCGCAAAGATGGAAAGGT
TGGTAGCATATTCTCGTTCCTCCCAGCAGGTAGCAGCAAGTAGTAGCCAA
AACCAAGACAGGGGGTTGGTTGTGTATGTCAGACTAATGGCGACCTCCCC
GTTCGAAGAATTGGATGTGAGTGATCAAACGTATCGCGCCGGATGGTTGT
GGACGAAGAGCTGTCCTTTGCAGGAGTCAAAACAAGGCCGCCGAACACGC
TACTTTGGTGTGTGTTGGCTGGTCGCCGTACGTCCGTTGTTCGGCGTCTT
GTCTCGGATGCCAGCTGCAACACCAGGGCGCTTGGCATCAGGCGGGTTAC
GTGAAAAACAATGGTGTATCGCAAAGATGGAAAGGTTGGTAGCATATTCT
CGTTCCTCCCAGCAGGTAGCAGCAAGTAGTAGCCAAAACCAAGACAGGGG
GTTGGTTGTGTATGTCAGACTA
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