mRNA_L-elsbetiae_contig17677.4996.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17677.4996.1
Unique NamemRNA_L-elsbetiae_contig17677.4996.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17677.4996.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.820e-35
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:  634 RRREQVPFHKAVKLLSTEAKLPGRPVETTERLCAAIIAACHLRRQVRSILGLVEDEHAKAARAMCLTIEEAGRTASPLELAS-SLAKPPENGAGGA 918
            +R+EQVPFHKA+KLLSTE KLPGRPV+TTERLC AIIAAC LR QVRS+LGL EDEH  AARAMCLTI+EAGRTASP+ELAS S+ + PENG GGA
Sbjct: 1373 KRKEQVPFHKAIKLLSTEGKLPGRPVDTTERLCVAIIAACRLRLQVRSLLGLGEDEHTTAARAMCLTIQEAGRTASPVELASRSVRRHPENGTGGA 1468
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17677.4996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES6_ECTSI6.820e-3579.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17677contigL-elsbetiae_contig17677:2004..3271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D8LES6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size969
Cds size969
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17677.4996.1prot_L-elsbetiae_contig17677.4996.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17677 2004..3271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.858765-CDS-L-elsbetiae_contig17677:2003..24341622815736.858765-CDS-L-elsbetiae_contig17677:2003..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 2004..2434 +
1691683069.880766-CDS-L-elsbetiae_contig17677:2003..24341691683069.880766-CDS-L-elsbetiae_contig17677:2003..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 2004..2434 +
1622815736.870534-CDS-L-elsbetiae_contig17677:2453..28231622815736.870534-CDS-L-elsbetiae_contig17677:2453..2823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 2454..2823 +
1691683069.8941236-CDS-L-elsbetiae_contig17677:2453..28231691683069.8941236-CDS-L-elsbetiae_contig17677:2453..2823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 2454..2823 +
1622815736.8806913-CDS-L-elsbetiae_contig17677:3103..32711622815736.8806913-CDS-L-elsbetiae_contig17677:3103..3271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 3104..3271 +
1691683069.9115853-CDS-L-elsbetiae_contig17677:3103..32711691683069.9115853-CDS-L-elsbetiae_contig17677:3103..3271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17677 3104..3271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17677.4996.1

>prot_L-elsbetiae_contig17677.4996.1 ID=prot_L-elsbetiae_contig17677.4996.1|Name=mRNA_L-elsbetiae_contig17677.4996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp
WSREQRQGQGRAARPGRDQRRRVGGAADCFLGETVEWRRRWRRRARRRRG
RSRGRRDGTPARPVRGRGRRPFPIVAPSGRLARPPVPAVHRGPDPRGGGA
RGAGGDPGQPPPGRGRVRRLGEDHRGDSRGRRRRRRGRGGRGGGAAATAT
SAAAAVSLFGTAKRTTAAATTIHGVDDEGRGYGAGRGGRGASARERAPRS
GLRAEGSAFTTRRREQVPFHKAVKLLSTEAKLPGRPVETTERLCAAIIAA
CHLRRQVRSILGLVEDEHAKAARAMCLTIEEAGRTASPLELASSLAKPPE
NGAGGADPESSDSSKPSDSSSAD
back to top

mRNA from alignment at L-elsbetiae_contig17677:2004..3271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17677.4996.1 ID=mRNA_L-elsbetiae_contig17677.4996.1|Name=mRNA_L-elsbetiae_contig17677.4996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1268bp|location=Sequence derived from alignment at L-elsbetiae_contig17677:2004..3271+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGCCGTGAGCAACGGCAAGGTCAAGGTCGAGCCGCAAGGCCTGGGCG
AGACCAACGGCGACGCGTCGGCGGCGCAGCGGACTGCTTCCTCGGCGAGA
CCGTCGAATGGCGGCGGCGGTGGCGGCGGCGCGCGAGAAGACGACGAGGC
CGGAGCAGAGGCCGACGAGATGGAACTCCAGCTCGACCTGTCCGTGGACG
AGGACGACGCCCCTTCCCCATCGTCGCTCCTTCCGGCCGGCTGGCACGAC
CGCCCGTCCCTGCGGTACATCGGGGACCTGATCCGCGCGGGGGAGGAGCT
AGGGGCGCCGGAGGAGACCCTGGACAGCCTCCGCCAGGTCGTGGACGCGT
GCGCCGGCTGGGTGAAGACCATCGAGGGGATTCTCGGGGCCGCCGCCGCC
GTCGACGCGGACGGGGCGGACGGGGCGGCGGCCACCGCGACCTCCGCCGC
GGCGGCGGCCACCGCGACCTCCGCCGCGGCGGCGGTCAGCCTGTTCGGCA
CCGCGAAGAGGACGACGGCGGCGGCGACCACGATCCACGGTGTCGACGAC
GAGGGCAGGGGCTACGGCGCCGGCCGCGGCGGCAGGGGGGCAAGCGCCAG
GGAGAGAGCCCCCCGGAGCGGCCTGCGCGCGGAGGGCTCCGCGTTCACGA
CGAGGCGGAGGGAGCAGGTGCCATTCCACAAGGCCGTCAAGCTGCTGAGC
ACGGAGGCGAAGCTGCCGGGGAGGCCGGTGGAAACGACAGAGAGGCTCTG
CGCCGCGATTATAGCCGCGTGCCACTTGCGGAGGCAGGTTCGGTCGATCC
TGGGGCTCGTCGAGGACGAGGTGCGCGACGGGGGACGTGACGTCAGTCGG
GGGGGGGGGGGGGGTCGCGTGAGGGTGCGGTTGAACCTCGTGCATTCGTA
TCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGATGGTGCTGCTGCT
GCTGTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTTGTTGTCG
TTGCCTTCACGCATCCAACCCGAAGCTTTACTTCTCTGTGCGATGCAAGT
GGTCCGTAAAACTCCCCCCCCCCTCCACCTGCCGGCCAACCTCCCTGCAG
CACGCAAAGGCCGCGAGGGCGATGTGCTTGACCATTGAAGAGGCCGGCCG
GACGGCCTCGCCTTTAGAGCTCGCGTCGAGTCTCGCCAAGCCTCCGGAAA
ACGGTGCGGGCGGCGCCGACCCCGAATCCTCCGACTCCTCCAAGCCCTCC
GACTCCTCCTCTGCGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17677:2004..3271+

>mRNA_L-elsbetiae_contig17677.4996.1 ID=mRNA_L-elsbetiae_contig17677.4996.1|Name=mRNA_L-elsbetiae_contig17677.4996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig17677:2004..3271+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGCCGTGAGCAACGGCAAGGTCAAGGTCGAGCCGCAAGGCCTGGGCG
AGACCAACGGCGACGCGTCGGCGGCGCAGCGGACTGCTTCCTCGGCGAGA
CCGTCGAATGGCGGCGGCGGTGGCGGCGGCGCGCGAGAAGACGACGAGGC
CGGAGCAGAGGCCGACGAGATGGAACTCCAGCTCGACCTGTCCGTGGACG
AGGACGACGCCCCTTCCCCATCGTCGCTCCTTCCGGCCGGCTGGCACGAC
CGCCCGTCCCTGCGGTACATCGGGGACCTGATCCGCGCGGGGGAGGAGCT
AGGGGCGCCGGAGGAGACCCTGGACAGCCTCCGCCAGGTCGTGGACGCGT
GCGCCGGCTGGGTGAAGACCATCGAGGGGATTCTCGGGGCCGCCGCCGCC
GTCGACGCGGACGGGGCGGACGGGGCGGCGGTGGAGCCGTGAGCAACGGC
AAGGTCAAGGTCGAGCCGCAAGGCCTGGGCGAGACCAACGGCGACGCGTC
GGCGGCGCAGCGGACTGCTTCCTCGGCGAGACCGTCGAATGGCGGCGGCG
GTGGCGGCGGCGCGCGAGAAGACGACGAGGCCGGAGCAGAGGCCGACGAG
ATGGAACTCCAGCTCGACCTGTCCGTGGACGAGGACGACGCCCCTTCCCC
ATCGTCGCTCCTTCCGGCCGGCTGGCACGACCGCCCGTCCCTGCGGTACA
TCGGGGACCTGATCCGCGCGGGGGAGGAGCTAGGGGCGCCGGAGGAGACC
CTGGACAGCCTCCGCCAGGTCGTGGACGCGTGCGCCGGCTGGGTGAAGAC
CATCGAGGGGATTCTCGGGGCCGCCGCCGCCGTCGACGCGGACGGGGCGG
ACGGGGCGGCGGGGCGGCGGCCACCGCGACCTCCGCCGCGGCGGCGGTCA
GCCTGTTCGGCACCGCGAAGAGGACGACGGCGGCGGCGACCACGATCCAC
GGTGTCGACGACGAGGGCAGGGGCTACGGCGCCGGCCGCGGCGGCAGGGG
GGCAAGCGCCAGGGAGAGAGCCCCCCGGAGCGGCCTGCGCGCGGAGGGCT
CCGCGTTCACGACGAGGCGGAGGGAGCAGGTGCCATTCCACAAGGCCGTC
AAGCTGCTGAGCACGGAGGCGAAGCTGCCGGGGAGGCCGGTGGAAACGAC
AGAGAGGCTCTGCGCCGCGATTATAGCCGCGTGCCACTTGCGGAGGCAGG
TTCGGTCGATCCTGGGGCTCGTCGAGGACGAGGGCGGCGGCCACCGCGAC
CTCCGCCGCGGCGGCGGTCAGCCTGTTCGGCACCGCGAAGAGGACGACGG
CGGCGGCGACCACGATCCACGGTGTCGACGACGAGGGCAGGGGCTACGGC
GCCGGCCGCGGCGGCAGGGGGGCAAGCGCCAGGGAGAGAGCCCCCCGGAG
CGGCCTGCGCGCGGAGGGCTCCGCGTTCACGACGAGGCGGAGGGAGCAGG
TGCCATTCCACAAGGCCGTCAAGCTGCTGAGCACGGAGGCGAAGCTGCCG
GGGAGGCCGGTGGAAACGACAGAGAGGCTCTGCGCCGCGATTATAGCCGC
GTGCCACTTGCGGAGGCAGGTTCGGTCGATCCTGGGGCTCGTCGAGGACG
AGCACGCAAAGGCCGCGAGGGCGATGTGCTTGACCATTGAAGAGGCCGGC
CGGACGGCCTCGCCTTTAGAGCTCGCGTCGAGTCTCGCCAAGCCTCCGGA
AAACGGTGCGGGCGGCGCCGACCCCGAATCCTCCGACTCCTCCAAGCCCT
CCGACTCCTCCTCTGCGGACCACGCAAAGGCCGCGAGGGCGATGTGCTTG
ACCATTGAAGAGGCCGGCCGGACGGCCTCGCCTTTAGAGCTCGCGTCGAG
TCTCGCCAAGCCTCCGGAAAACGGTGCGGGCGGCGCCGACCCCGAATCCT
CCGACTCCTCCAAGCCCTCCGACTCCTCCTCTGCGGAC
back to top