mRNA_L-elsbetiae_contig17674.4995.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17674.4995.1
Unique NamemRNA_L-elsbetiae_contig17674.4995.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17674.4995.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.370e-24
Identity = 55/133 (41.35%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  453 RLLVRQQSLGQPHPHQVDQRIAEGAGGYEAFGHLLQLMTMQFGAKDRGDAFTRLNAYVVPSGTTFAKFLQEYRQEVANVSHSASAIKPDIGWILEITRNKINTQFPTMMTVCYPGRLAVAAVPYESLDVMWRA 851
            R L R+ S G+    QV +R+ +GA G EAF  LL+L++ QF   DR ++F RL  + V +GT FA +L+ +R  V++V+ S   + P +  +LEI RN ++ QFP++  + YPG LA A  P++S+D MW+A
Sbjct:  103 RSLPRKTSSGRISRQQVKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVSMVLEIVRNSVSKQFPSLAPMLYPGDLATAVTPFDSIDAMWQA 235
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BLAST of mRNA_L-elsbetiae_contig17674.4995.1 vs. uniprot
Match: A0A6H5JZJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.440e-11
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  480 GQPHPHQVDQRIAEGAGGYEAFGHLLQLMTMQFGAKDRGDAFTRLNAYVVPSGTTFAKFLQEYRQEVANVSHSASAIKPDIGWILEITRNKINTQFPTMMTVCYPGRLAVAAVPYESLDVM 842
            G     QV + +   A G +AF  LL+ +   F   DR ++F RL       G  FA +L+ +R  V++V+ S   +   +  +LEI RN ++ QFP++  + YPG LA A  P++S+ V+
Sbjct:  111 GPSSKQQVKRSLDGEAPGPDAFQLLLRHLAEHFDVGDRQESFLRLQQLGAADGIPFADYLRAFRFFVSSVTGSERTLVRSVSMVLEIVRNSVDKQFPSLAPLWYPGVLATAVTPFKSIAVI 231
[Close]
BLAST of mRNA_L-elsbetiae_contig17674.4995.1 vs. uniprot
Match: A0A6H5JE42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE42_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.880e-9
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:  498 QVDQRIAEGAGGYEAFGHLLQLMTMQFGAKDRGDAFTRLNAYVVPSGTTFAKFLQEYRQEVANVSHSASAIKPDIGWILEITRNKINTQFPTM 776
            QV + +  GA G +AF  LL+ +  QF   DR ++  RL  + V  GT FA +L+ +R  V++V+ S   + P +  +LEI RN ++ QFP++
Sbjct:  117 QVKRSLDGGAPGPDAFQLLLRHLAEQFDVGDRQESVLRLQQFGVADGTPFADYLRAFRLLVSSVTDSERTLAPSVSMVLEIVRNSVDKQFPSL 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17674.4995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE1.370e-2441.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZJ8_9PHAE2.440e-1133.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE42_9PHAE1.880e-936.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17674contigL-elsbetiae_contig17674:500..1776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size853
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17674.4995.1prot_L-elsbetiae_contig17674.4995.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17674 849..1776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.7799942-UTR-L-elsbetiae_contig17674:499..8481622815736.7799942-UTR-L-elsbetiae_contig17674:499..848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17674 500..848 -
1691683069.8422236-UTR-L-elsbetiae_contig17674:499..8481691683069.8422236-UTR-L-elsbetiae_contig17674:499..848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17674 500..848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.8022833-CDS-L-elsbetiae_contig17674:848..8521622815736.8022833-CDS-L-elsbetiae_contig17674:848..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17674 849..852 -
1691683069.8529856-CDS-L-elsbetiae_contig17674:848..8521691683069.8529856-CDS-L-elsbetiae_contig17674:848..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17674 849..852 -
1622815736.8191628-CDS-L-elsbetiae_contig17674:1276..17761622815736.8191628-CDS-L-elsbetiae_contig17674:1276..1776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17674 1277..1776 -
1691683069.8652542-CDS-L-elsbetiae_contig17674:1276..17761691683069.8652542-CDS-L-elsbetiae_contig17674:1276..1776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17674 1277..1776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17674.4995.1

>prot_L-elsbetiae_contig17674.4995.1 ID=prot_L-elsbetiae_contig17674.4995.1|Name=mRNA_L-elsbetiae_contig17674.4995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
ADANRTVTSDWTTVDHSKPSAAARAASSRAGDSAPLETRRRDCSSRGSSG
SDRRKNSSDHQRREARRSPRSSRSPRRHSSSNANGHRSSPRSDPEPPAYG
SDTRSRAAKREEERRQAPREHKPSRSSKASKRSDHRSPRRHDSSDSRGRD
SDSSFVSKASASHTPTR*
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mRNA from alignment at L-elsbetiae_contig17674:500..1776-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17674.4995.1 ID=mRNA_L-elsbetiae_contig17674.4995.1|Name=mRNA_L-elsbetiae_contig17674.4995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1277bp|location=Sequence derived from alignment at L-elsbetiae_contig17674:500..1776- (Laminarionema elsbetiae ELsaHSoW15)
GCCGACGCCAACCGCACCGTCACCTCTGACTGGACAACCGTCGACCACAG
CAAACCGTCCGCTGCCGCGCGGGCCGCATCTTCGAGAGCGGGGGACTCAG
CACCGTTAGAGACTCGCCGCCGTGACTGCTCATCGCGCGGCTCCAGTGGG
AGCGACCGCCGGAAGAACTCCTCGGATCACCAGCGCAGGGAAGCCCGTCG
ATCGCCCCGTTCCAGCCGCTCGCCTCGCCGCCACAGCTCCTCCAACGCCA
ACGGTCACCGCTCTTCCCCGCGCAGCGATCCCGAACCCCCGGCGTACGGC
TCCGACACGCGCAGCCGCGCCGCCAAGCGCGAAGAGGAGAGGCGGCAGGC
GCCCCGCGAGCACAAACCTTCTCGGAGCAGCAAGGCCAGCAAGCGCTCCG
ACCACCGTAGCCCCCGTCGCCACGACTCCAGCGACTCCCGCGGGAGGGAC
TCCGACTCCTCGTTCGTCAGCAAAGCCTCGGCCAGCCACACCCCCACCAG
GCAAGTTCTTCCCGCGCATGCAGTACCCACATCTCGCCTTCCTGCAGCGT
TGCTTCAGCAAAATAGTGGTCCATCCGTGTTCACATTGCAGCAACAATTT
GCACAACAAGAAGCACGCTCGCTTATCGTGGCCGTCAAAGAGAAATACGC
CAAGACAAACTTCAAAACGATCCCGCTCATCCAGCCATCCCTTCCGTTCC
ACAAAAACATCAACGGAGCCAGTGCCATCACACAACTGCTAGATACCACT
AAGACAGCCATGGAAGAAATTTTATTGCAAGCCGACCCCCTTCTGGAGTT
CACCACCGGCAGCTGGATTCCAGGTTGGCAGCGCTACATCAAGCGCGCCG
TCAAAGCAGCTATCACCGCGAACACTCCCCAATCGGCCAACCTGCATGCA
ATCTTCTCCGGATTTTTCGAACAGGTAGACCAGCGGATAGCGGAGGGAGC
CGGAGGGTACGAGGCTTTTGGGCACCTTCTGCAGCTCATGACCATGCAAT
TCGGCGCTAAAGACCGGGGCGACGCCTTCACGCGTCTGAACGCATATGTT
GTCCCGTCGGGAACTACTTTCGCCAAATTTTTGCAAGAGTACCGTCAAGA
GGTTGCGAACGTGTCGCATTCAGCTAGTGCAATTAAGCCGGACATCGGGT
GGATACTAGAGATCACCCGCAACAAGATTAACACCCAGTTCCCGACCATG
ATGACTGTGTGCTACCCCGGGCGTTTAGCGGTTGCAGCTGTTCCGTACGA
GAGTTTGGACGTCATGTGGAGAGCATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17674:500..1776-

>mRNA_L-elsbetiae_contig17674.4995.1 ID=mRNA_L-elsbetiae_contig17674.4995.1|Name=mRNA_L-elsbetiae_contig17674.4995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig17674:500..1776- (Laminarionema elsbetiae ELsaHSoW15)
GCCGACGCCAACCGCACCGTCACCTCTGACTGGACAACCGTCGACCACAG
CAAACCGTCCGCTGCCGCGCGGGCCGCATCTTCGAGAGCGGGGGACTCAG
CACCGTTAGAGACTCGCCGCCGTGACTGCTCATCGCGCGGCTCCAGTGGG
AGCGACCGCCGGAAGAACTCCTCGGATCACCAGCGCAGGGAAGCCCGTCG
ATCGCCCCGTTCCAGCCGCTCGCCTCGCCGCCACAGCTCCTCCAACGCCA
ACGGTCACCGCTCTTCCCCGCGCAGCGATCCCGAACCCCCGGCGTACGGC
TCCGACACGCGCAGCCGCGCCGCCAAGCGCGAAGAGGAGAGGCGGCAGGC
GCCCCGCGAGCACAAACCTTCTCGGAGCAGCAAGGCCAGCAAGCGCTCCG
ACCACCGTAGCCCCCGTCGCCACGACTCCAGCGACTCCCGCGGGAGGGAC
TCCGACTCCTCGTTCGTCAGCAAAGCCTCGGCCAGCCACACCCCCACCAG
GCCGACGCCAACCGCACCGTCACCTCTGACTGGACAACCGTCGACCACAG
CAAACCGTCCGCTGCCGCGCGGGCCGCATCTTCGAGAGCGGGGGACTCAG
CACCGTTAGAGACTCGCCGCCGTGACTGCTCATCGCGCGGCTCCAGTGGG
AGCGACCGCCGGAAGAACTCCTCGGATCACCAGCGCAGGGAAGCCCGTCG
ATCGCCCCGTTCCAGCCGCTCGCCTCGCCGCCACAGCTCCTCCAACGCCA
ACGGTCACCGCTCTTCCCCGCGCAGCGATCCCGAACCCCCGGCGTACGGC
TCCGACACGCGCAGCCGCGCCGCCAAGCGCGAAGAGGAGAGGCGGCAGGC
GCCCCGCGAGCACAAACCTTCTCGGAGCAGCAAGGCCAGCAAGCGCTCCG
ACCACCGTAGCCCCCGTCGCCACGACTCCAGCGACTCCCGCGGGAGGGAC
TCCGACTCCTCGTTCGTCAGCAAAGCCTCGGCCAGCCACACCCCCACCAG
GTAGGTAG
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